RNA–Protein interactions for RNA: ENST00000414981.2

HMGB3P23-201, Transcript of high mobility group box 3 pseudogene 23, humanhuman

BASIC

Gene HMGB3P23, Length 585 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P23-201ENST00000414981 DZIP1LQ8IYY4 767 aaKnown RBP6.74□□□□□ -1.33
HMGB3P23-201ENST00000414981 TCF12Q99081 682 aa6.74□□□□□ -1.33
HMGB3P23-201ENST00000414981 SOX17Q9H6I2 414 aaPredicted RBP6.74□□□□□ -1.33
HMGB3P23-201ENST00000414981 LIN7BQ9HAP6 207 aa6.74□□□□□ -1.33
HMGB3P23-201ENST00000414981 A0A096LPE4 126 aa6.73□□□□□ -1.33
HMGB3P23-201ENST00000414981 A0A1W2PPZ6 126 aa6.73□□□□□ -1.33
HMGB3P23-201ENST00000414981 MAPK1P28482 360 aa6.73□□□□□ -1.33
HMGB3P23-201ENST00000414981 C19orf57Q0VDD7 668 aa6.73□□□□□ -1.33
HMGB3P23-201ENST00000414981 FOXD4L6Q3SYB3 417 aaPredicted RBP6.73□□□□□ -1.33
HMGB3P23-201ENST00000414981 FOXD4L3Q6VB84 417 aaPredicted RBP6.73□□□□□ -1.33
HMGB3P23-201ENST00000414981 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.73□□□□□ -1.33
HMGB3P23-201ENST00000414981 ZSCAN29Q8IWY8 852 aaPredicted RBP6.73□□□□□ -1.33
HMGB3P23-201ENST00000414981 ASAP3Q8TDY4 903 aa6.73□□□□□ -1.33
HMGB3P23-201ENST00000414981 KCNK4Q9NYG8 393 aa6.73□□□□□ -1.33
HMGB3P23-201ENST00000414981 TREHO43280 583 aa6.72□□□□□ -1.33
HMGB3P23-201ENST00000414981 ALX3O95076 343 aa6.72□□□□□ -1.33
HMGB3P23-201ENST00000414981 DUOXA2Q1HG44 320 aa6.72□□□□□ -1.33
HMGB3P23-201ENST00000414981 Q6ZS46 218 aa6.72□□□□□ -1.33
HMGB3P23-201ENST00000414981 TP53INP1Q96A56 240 aa6.72□□□□□ -1.33
HMGB3P23-201ENST00000414981 CARD10Q9BWT7 1032 aa6.72□□□□□ -1.33
HMGB3P23-201ENST00000414981 EHD4Q9H223 541 aa6.72□□□□□ -1.33
HMGB3P23-201ENST00000414981 SEMA6BQ9H3T3 888 aa6.72□□□□□ -1.33
HMGB3P23-201ENST00000414981 MEGF11A6BM72 1044 aa6.71□□□□□ -1.34
HMGB3P23-201ENST00000414981 DDX3YO15523 660 aaKnown RBP6.71□□□□□ -1.34
HMGB3P23-201ENST00000414981 ESRRAP11474 423 aaPredicted RBP6.71□□□□□ -1.34
HMGB3P23-201ENST00000414981 GRIA4P48058 902 aa6.71□□□□□ -1.34
HMGB3P23-201ENST00000414981 PTPN12Q05209 780 aaKnown RBP6.71□□□□□ -1.34
HMGB3P23-201ENST00000414981 KIAA1211Q6ZU35 1233 aa6.71□□□□□ -1.34
HMGB3P23-201ENST00000414981 SLC7A3Q8WY07 619 aa6.71□□□□□ -1.34
HMGB3P23-201ENST00000414981 PPP4R2Q9NY27 417 aa6.71□□□□□ -1.34
HMGB3P23-201ENST00000414981 METTL12A8MUP2 240 aa6.7□□□□□ -1.34
HMGB3P23-201ENST00000414981 ADAM11O75078 769 aa6.7□□□□□ -1.34
HMGB3P23-201ENST00000414981 ITPKAP23677 461 aa6.7□□□□□ -1.34
HMGB3P23-201ENST00000414981 SPRED3Q2MJR0 410 aa6.7□□□□□ -1.34
HMGB3P23-201ENST00000414981 FOXD4L4Q8WXT5 416 aaPredicted RBP6.7□□□□□ -1.34
HMGB3P23-201ENST00000414981 MEGF10Q96KG7 1140 aa6.7□□□□□ -1.34
HMGB3P23-201ENST00000414981 ASB16Q96NS5 453 aa6.7□□□□□ -1.34
HMGB3P23-201ENST00000414981 CLEC4MQ9H2X3 399 aaPredicted RBP6.7□□□□□ -1.34
HMGB3P23-201ENST00000414981 ZFYVE1Q9HBF4 777 aa6.7□□□□□ -1.34
HMGB3P23-201ENST00000414981 NPHS2Q9NP85 383 aa6.7□□□□□ -1.34
HMGB3P23-201ENST00000414981 TRAK1Q9UPV9 953 aa6.7□□□□□ -1.34
HMGB3P23-201ENST00000414981 DYRK3O43781 588 aa6.69□□□□□ -1.34
HMGB3P23-201ENST00000414981 GADD45BO75293 160 aaPredicted RBP6.69□□□□□ -1.34
HMGB3P23-201ENST00000414981 WISP1O95388 367 aa6.69□□□□□ -1.34
HMGB3P23-201ENST00000414981 ENOX2Q16206 610 aaKnown RBP6.69□□□□□ -1.34
HMGB3P23-201ENST00000414981 ZNF423Q2M1K9 1284 aa6.69□□□□□ -1.34
HMGB3P23-201ENST00000414981 HGSNATQ68CP4 663 aa6.69□□□□□ -1.34
HMGB3P23-201ENST00000414981 PRPF40BQ6NWY9 871 aaKnown RBP6.69□□□□□ -1.34
HMGB3P23-201ENST00000414981 ACAD11Q709F0 780 aa6.69□□□□□ -1.34
HMGB3P23-201ENST00000414981 AEBP1Q8IUX7 1158 aa6.69□□□□□ -1.34
HMGB3P23-201ENST00000414981 CEP41Q9BYV8 373 aa6.69□□□□□ -1.34
HMGB3P23-201ENST00000414981 NLRP2Q9NX02 1062 aa6.69□□□□□ -1.34
HMGB3P23-201ENST00000414981 TMEM238LA0A1B0GVL6 79 aa6.68□□□□□ -1.34
HMGB3P23-201ENST00000414981 PCDH1Q08174 1060 aa6.68□□□□□ -1.34
HMGB3P23-201ENST00000414981 RPS26P11Q5JNZ5 115 aaPredicted RBP6.68□□□□□ -1.34
HMGB3P23-201ENST00000414981 SLC51AQ86UW1 340 aa6.68□□□□□ -1.34
HMGB3P23-201ENST00000414981 AGGF1Q8N302 714 aaeCLIP6.68□□□□□ -1.34
HMGB3P23-201ENST00000414981 DDX54Q8TDD1 881 aaKnown RBP6.68□□□□□ -1.34
HMGB3P23-201ENST00000414981 EPS8L3Q8TE67 593 aaKnown RBP6.68□□□□□ -1.34
HMGB3P23-201ENST00000414981 UBL7Q96S82 380 aaPredicted RBP6.68□□□□□ -1.34
HMGB3P23-201ENST00000414981 RNF208Q9H0X6 261 aa6.68□□□□□ -1.34
HMGB3P23-201ENST00000414981 GLB1P16278 677 aa6.67□□□□□ -1.34
HMGB3P23-201ENST00000414981 ITGB7P26010 798 aa6.67□□□□□ -1.34
HMGB3P23-201ENST00000414981 NLRP12P59046 1061 aa6.67□□□□□ -1.34
HMGB3P23-201ENST00000414981 GRM2Q14416 872 aa6.67□□□□□ -1.34
HMGB3P23-201ENST00000414981 EXOSC6Q5RKV6 272 aaKnown RBP6.67□□□□□ -1.34
HMGB3P23-201ENST00000414981 GLIS3Q8NEA6 775 aa6.67□□□□□ -1.34
HMGB3P23-201ENST00000414981 UBASH3BQ8TF42 649 aa6.67□□□□□ -1.34
HMGB3P23-201ENST00000414981 B3GALT4O96024 378 aa6.66□□□□□ -1.34
HMGB3P23-201ENST00000414981 XRCC5P13010 732 aaKnown RBP6.66□□□□□ -1.34
HMGB3P23-201ENST00000414981 GSTM4Q03013 218 aa6.66□□□□□ -1.34
HMGB3P23-201ENST00000414981 FMR1Q06787 632 aaKnown RBP eCLIP6.66□□□□□ -1.34
HMGB3P23-201ENST00000414981 UVSSAQ2YD98 709 aa6.66□□□□□ -1.34
HMGB3P23-201ENST00000414981 ANKRD34AQ69YU3 496 aa6.66□□□□□ -1.34
HMGB3P23-201ENST00000414981 PRR23CQ6ZRP0 262 aa6.66□□□□□ -1.34
HMGB3P23-201ENST00000414981 FBF1Q8TES7 1133 aa6.66□□□□□ -1.34
HMGB3P23-201ENST00000414981 FAM46AQ96IP4 442 aaKnown RBP6.66□□□□□ -1.34
HMGB3P23-201ENST00000414981 RUSC1Q9BVN2 902 aa6.66□□□□□ -1.34
HMGB3P23-201ENST00000414981 ZNF576Q9H609 170 aa6.66□□□□□ -1.34
HMGB3P23-201ENST00000414981 ABCB6Q9NP58 842 aa6.66□□□□□ -1.34
HMGB3P23-201ENST00000414981 PNMA6FA0A0J9YX94 578 aa6.65□□□□□ -1.34
HMGB3P23-201ENST00000414981 LOC100289279A0A1B0GTE1 492 aa6.65□□□□□ -1.34
HMGB3P23-201ENST00000414981 CYP11A1P05108 521 aa6.65□□□□□ -1.34
HMGB3P23-201ENST00000414981 ALG1LQ6GMV1 187 aa6.65□□□□□ -1.34
HMGB3P23-201ENST00000414981 SND1Q7KZF4 910 aaKnown RBP eCLIP6.65□□□□□ -1.34
HMGB3P23-201ENST00000414981 TMPRSS13Q9BYE2 586 aa6.65□□□□□ -1.34
HMGB3P23-201ENST00000414981 SUGCTQ9HAC7 445 aa6.65□□□□□ -1.34
HMGB3P23-201ENST00000414981 GIPC1O14908 333 aa6.64□□□□□ -1.35
HMGB3P23-201ENST00000414981 COL19A1Q14993 1142 aa6.64□□□□□ -1.35
HMGB3P23-201ENST00000414981 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.64□□□□□ -1.35
HMGB3P23-201ENST00000414981 PRSS36Q5K4E3 855 aa6.64□□□□□ -1.35
HMGB3P23-201ENST00000414981 NUTM2GQ5VZR2 741 aa6.64□□□□□ -1.35
HMGB3P23-201ENST00000414981 SMG8Q8ND04 991 aaKnown RBP6.64□□□□□ -1.35
HMGB3P23-201ENST00000414981 BCO2Q9BYV7 579 aa6.64□□□□□ -1.35
HMGB3P23-201ENST00000414981 NRSN2Q9GZP1 204 aa6.64□□□□□ -1.35
HMGB3P23-201ENST00000414981 DHX15O43143 795 aaKnown RBP6.63□□□□□ -1.35
HMGB3P23-201ENST00000414981 SART1O43290 800 aaKnown RBP6.63□□□□□ -1.35
HMGB3P23-201ENST00000414981 MAPK8P45983 427 aa6.63□□□□□ -1.35
HMGB3P23-201ENST00000414981 HP1BP3Q5SSJ5 553 aaPredicted RBP6.63□□□□□ -1.35
HMGB3P23-201ENST00000414981 ARMC10Q8N2F6 343 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms