RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 CCDC152Q4G0S7 254 aa10.69□□□□□ -0.7
TDP1-202ENST00000393452 NSUN7Q8NE18 718 aaKnown RBP10.69□□□□□ -0.7
TDP1-202ENST00000393452 ANP32BQ92688 251 aaKnown RBP10.69□□□□□ -0.7
TDP1-202ENST00000393452 PDLIM2Q96JY6 352 aa10.69□□□□□ -0.7
TDP1-202ENST00000393452 PIH1D3Q9NQM4 214 aaKnown RBP10.69□□□□□ -0.7
TDP1-202ENST00000393452 NIP7Q9Y221 180 aaKnown RBP eCLIP10.69□□□□□ -0.7
TDP1-202ENST00000393452 SALL1Q9NSC2 1324 aa10.69□□□□□ -0.7
TDP1-202ENST00000393452 CTDNEP1O95476 244 aa10.68□□□□□ -0.7
TDP1-202ENST00000393452 SLC5A1P13866 664 aa10.68□□□□□ -0.7
TDP1-202ENST00000393452 APOBRQ0VD83 1088 aa10.68□□□□□ -0.7
TDP1-202ENST00000393452 SLC9C2Q5TAH2 1124 aa10.68□□□□□ -0.7
TDP1-202ENST00000393452 TTC6Q86TZ1 520 aa10.68□□□□□ -0.7
TDP1-202ENST00000393452 FERMT3Q86UX7 667 aa10.68□□□□□ -0.7
TDP1-202ENST00000393452 TSPY26PQ9H489 355 aa10.68□□□□□ -0.7
TDP1-202ENST00000393452 SEC31BQ9NQW1 1179 aa10.68□□□□□ -0.7
TDP1-202ENST00000393452 TCRBV5S4A2TA0A5A2 114 aa10.68□□□□□ -0.7
TDP1-202ENST00000393452 LETM1O95202 739 aaPredicted RBP10.68□□□□□ -0.7
TDP1-202ENST00000393452 PDIA3P30101 505 aaKnown RBP10.68□□□□□ -0.7
TDP1-202ENST00000393452 HMGN5P82970 282 aaKnown RBP10.68□□□□□ -0.7
TDP1-202ENST00000393452 MB21D2Q8IYB1 491 aaPredicted RBP10.68□□□□□ -0.7
TDP1-202ENST00000393452 WDR19Q8NEZ3 1342 aa10.68□□□□□ -0.7
TDP1-202ENST00000393452 HELBQ8NG08 1087 aaPredicted RBP10.68□□□□□ -0.7
TDP1-202ENST00000393452 CHMP4CQ96CF2 233 aa10.68□□□□□ -0.7
TDP1-202ENST00000393452 MPHOSPH8Q99549 860 aa10.68□□□□□ -0.7
TDP1-202ENST00000393452 SCAND2PQ9GZW5 306 aaPredicted RBP10.68□□□□□ -0.7
TDP1-202ENST00000393452 ZNF652Q9Y2D9 606 aa10.68□□□□□ -0.7
TDP1-202ENST00000393452 MYH15Q9Y2K3 1946 aa10.67□□□□□ -0.7
TDP1-202ENST00000393452 PDE6AP16499 860 aa10.67□□□□□ -0.7
TDP1-202ENST00000393452 FAM98CQ17RN3 349 aaKnown RBP10.67□□□□□ -0.7
TDP1-202ENST00000393452 IDH1O75874 414 aaKnown RBP10.67□□□□□ -0.7
TDP1-202ENST00000393452 HAND2P61296 217 aa10.67□□□□□ -0.7
TDP1-202ENST00000393452 RESTQ13127 1097 aa10.67□□□□□ -0.7
TDP1-202ENST00000393452 RASGRF1Q13972 1273 aa10.67□□□□□ -0.7
TDP1-202ENST00000393452 NAA16Q6N069 864 aaPredicted RBP10.67□□□□□ -0.7
TDP1-202ENST00000393452 FAM173BQ6P4H8 233 aa10.67□□□□□ -0.7
TDP1-202ENST00000393452 SPATA5Q8NB90 893 aa10.67□□□□□ -0.7
TDP1-202ENST00000393452 LINC00116Q8NCU8 138 aa10.67□□□□□ -0.7
TDP1-202ENST00000393452 ZSCAN16Q9H4T2 348 aaPredicted RBP10.67□□□□□ -0.7
TDP1-202ENST00000393452 CASZ1Q86V15 1759 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 CNTNAP4Q9C0A0 1308 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 ZNF532Q9HCE3 1301 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 PTPDC1A2A3K4 754 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 FAM177BA6PVY3 158 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 ZNF213O14771 459 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 MCM5P33992 734 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 CHST3Q7LGC8 479 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 FNBP4Q8N3X1 1017 aaPredicted RBP10.66□□□□□ -0.7
TDP1-202ENST00000393452 NCOA7Q8NI08 942 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 TRIM44Q96DX7 344 aaPredicted RBP10.66□□□□□ -0.7
TDP1-202ENST00000393452 NBPF3Q9H094 633 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 WWC3Q9ULE0 1092 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 A0A1B0GUL6 1792 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 SCN7AQ01118 1682 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 ZMYM6O95789 1325 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 ESPNB1AK53 854 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 IGHMBP2P38935 993 aaKnown RBP10.66□□□□□ -0.7
TDP1-202ENST00000393452 ANTXR2P58335 489 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 FAM184AQ8NB25 1140 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 DDX11Q96FC9 970 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 KIF3AQ9Y496 699 aa10.66□□□□□ -0.7
TDP1-202ENST00000393452 COL4A1P02462 1669 aa10.65□□□□□ -0.7
TDP1-202ENST00000393452 SNAP23O00161 211 aa10.65□□□□□ -0.7
TDP1-202ENST00000393452 PRC1O43663 620 aa10.65□□□□□ -0.7
TDP1-202ENST00000393452 CCT2P78371 535 aaKnown RBP10.65□□□□□ -0.7
TDP1-202ENST00000393452 SF3B3Q15393 1217 aaKnown RBP10.65□□□□□ -0.7
TDP1-202ENST00000393452 ALX1Q15699 326 aa10.65□□□□□ -0.7
TDP1-202ENST00000393452 STRBPQ96SI9 672 aaKnown RBP10.65□□□□□ -0.7
TDP1-202ENST00000393452 FUCA2Q9BTY2 467 aa10.65□□□□□ -0.7
TDP1-202ENST00000393452 H3BQV1 296 aa10.65□□□□□ -0.71
TDP1-202ENST00000393452 CLCN1P35523 988 aa10.65□□□□□ -0.71
TDP1-202ENST00000393452 HS1BP3Q53T59 392 aa10.65□□□□□ -0.71
TDP1-202ENST00000393452 IFFO2Q5TF58 517 aa10.65□□□□□ -0.71
TDP1-202ENST00000393452 LEO1Q8WVC0 666 aaPredicted RBP10.65□□□□□ -0.71
TDP1-202ENST00000393452 NGLY1Q96IV0 654 aa10.65□□□□□ -0.71
TDP1-202ENST00000393452 NCOA5Q9HCD5 579 aaKnown RBP10.65□□□□□ -0.71
TDP1-202ENST00000393452 BTAF1O14981 1849 aa10.64□□□□□ -0.71
TDP1-202ENST00000393452 THSD7AQ9UPZ6 1657 aa10.64□□□□□ -0.71
TDP1-202ENST00000393452 CHRNDQ07001 517 aa10.64□□□□□ -0.71
TDP1-202ENST00000393452 RC3H1Q5TC82 1133 aaKnown RBP10.64□□□□□ -0.71
TDP1-202ENST00000393452 RALYLQ86SE5 291 aaKnown RBP10.64□□□□□ -0.71
TDP1-202ENST00000393452 SPATA32Q96LK8 384 aa10.64□□□□□ -0.71
TDP1-202ENST00000393452 C8orf37Q96NL8 207 aa10.64□□□□□ -0.71
TDP1-202ENST00000393452 CDC5LQ99459 802 aaKnown RBP10.64□□□□□ -0.71
TDP1-202ENST00000393452 GPHNQ9NQX3 736 aaPredicted RBP10.64□□□□□ -0.71
TDP1-202ENST00000393452 TFIP11Q9UBB9 837 aaKnown RBP10.64□□□□□ -0.71
TDP1-202ENST00000393452 HPS5Q9UPZ3 1129 aa10.64□□□□□ -0.71
TDP1-202ENST00000393452 CHD4Q14839 1912 aa10.64□□□□□ -0.71
TDP1-202ENST00000393452 FDPSP14324 419 aaKnown RBP10.63□□□□□ -0.71
TDP1-202ENST00000393452 ADD1P35611 737 aaKnown RBP10.63□□□□□ -0.71
TDP1-202ENST00000393452 MAP3K12Q12852 859 aa10.63□□□□□ -0.71
TDP1-202ENST00000393452 UVSSAQ2YD98 709 aa10.63□□□□□ -0.71
TDP1-202ENST00000393452 SLC10A5Q5PT55 438 aa10.63□□□□□ -0.71
TDP1-202ENST00000393452 RNF214Q8ND24 703 aa10.63□□□□□ -0.71
TDP1-202ENST00000393452 TAF1P21675 1872 aa10.63□□□□□ -0.71
TDP1-202ENST00000393452 CARMIL3Q8ND23 1372 aa10.63□□□□□ -0.71
TDP1-202ENST00000393452 ZNF804BA4D1E1 1349 aa10.63□□□□□ -0.71
TDP1-202ENST00000393452 COL24A1Q17RW2 1714 aa10.63□□□□□ -0.71
TDP1-202ENST00000393452 HSPA1LP34931 641 aa10.63□□□□□ -0.71
TDP1-202ENST00000393452 BCAMP50895 628 aa10.63□□□□□ -0.71
TDP1-202ENST00000393452 ERFEQ4G0M1 354 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms