RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 KIF21BO75037 1637 aa7.42□□□□□ -1.22
USP48-202ENST00000374730 BIVM-ERCC5R4GMW8 1640 aa7.42□□□□□ -1.22
USP48-202ENST00000374730 NDUFB5O43674 189 aa7.42□□□□□ -1.22
USP48-202ENST00000374730 ALX3O95076 343 aa7.42□□□□□ -1.22
USP48-202ENST00000374730 WISP1O95388 367 aa7.42□□□□□ -1.22
USP48-202ENST00000374730 ARHGAP4P98171 946 aa7.42□□□□□ -1.22
USP48-202ENST00000374730 ACAD11Q709F0 780 aa7.42□□□□□ -1.22
USP48-202ENST00000374730 Q8N3U1 123 aa7.42□□□□□ -1.22
USP48-202ENST00000374730 BSNDQ8WZ55 320 aa7.42□□□□□ -1.22
USP48-202ENST00000374730 BHLHE41Q9C0J9 482 aaPredicted RBP7.42□□□□□ -1.22
USP48-202ENST00000374730 ZFYVE28Q9HCC9 887 aa7.42□□□□□ -1.22
USP48-202ENST00000374730 KCNK4Q9NYG8 393 aa7.42□□□□□ -1.22
USP48-202ENST00000374730 TRPA1O75762 1119 aa7.41□□□□□ -1.22
USP48-202ENST00000374730 GLB1P16278 677 aa7.41□□□□□ -1.22
USP48-202ENST00000374730 CDC25BP30305 580 aa7.41□□□□□ -1.22
USP48-202ENST00000374730 PRR23CQ6ZRP0 262 aa7.41□□□□□ -1.22
USP48-202ENST00000374730 AGGF1Q8N302 714 aaeCLIP7.41□□□□□ -1.22
USP48-202ENST00000374730 CCER1Q8TC90 406 aaPredicted RBP7.41□□□□□ -1.22
USP48-202ENST00000374730 FOXD4L4Q8WXT5 416 aaPredicted RBP7.41□□□□□ -1.22
USP48-202ENST00000374730 KLHDC7BQ96G42 594 aa7.41□□□□□ -1.22
USP48-202ENST00000374730 CITED4Q96RK1 184 aa7.41□□□□□ -1.22
USP48-202ENST00000374730 CEP41Q9BYV8 373 aa7.41□□□□□ -1.22
USP48-202ENST00000374730 SOGA1O94964 1423 aa7.41□□□□□ -1.22
USP48-202ENST00000374730 TOP2BQ02880 1626 aa7.41□□□□□ -1.22
USP48-202ENST00000374730 ADAM11O75078 769 aa7.4□□□□□ -1.22
USP48-202ENST00000374730 NEFLP07196 543 aa7.4□□□□□ -1.22
USP48-202ENST00000374730 PDE3BQ13370 1112 aa7.4□□□□□ -1.22
USP48-202ENST00000374730 DUOXA2Q1HG44 320 aa7.4□□□□□ -1.22
USP48-202ENST00000374730 UVSSAQ2YD98 709 aa7.4□□□□□ -1.22
USP48-202ENST00000374730 XP32Q5T750 250 aa7.4□□□□□ -1.22
USP48-202ENST00000374730 PEAR1Q5VY43 1037 aaPredicted RBP7.4□□□□□ -1.22
USP48-202ENST00000374730 FAM129BQ96TA1 746 aa7.4□□□□□ -1.22
USP48-202ENST00000374730 GOLGA3Q08378 1498 aa7.4□□□□□ -1.22
USP48-202ENST00000374730 TNIKQ9UKE5 1360 aa7.39□□□□□ -1.23
USP48-202ENST00000374730 ARL4DP49703 201 aa7.39□□□□□ -1.23
USP48-202ENST00000374730 KIAA1211Q6ZU35 1233 aa7.39□□□□□ -1.23
USP48-202ENST00000374730 SLC51AQ86UW1 340 aa7.39□□□□□ -1.23
USP48-202ENST00000374730 GALNT12Q8IXK2 581 aa7.39□□□□□ -1.23
USP48-202ENST00000374730 SOX17Q9H6I2 414 aaPredicted RBP7.39□□□□□ -1.23
USP48-202ENST00000374730 C19orf57Q0VDD7 668 aa7.38□□□□□ -1.23
USP48-202ENST00000374730 VN1R5Q7Z5H4 357 aa7.38□□□□□ -1.23
USP48-202ENST00000374730 UBASH3BQ8TF42 649 aa7.38□□□□□ -1.23
USP48-202ENST00000374730 LATS2Q9NRM7 1088 aa7.38□□□□□ -1.23
USP48-202ENST00000374730 CEP162Q5TB80 1403 aa7.37□□□□□ -1.23
USP48-202ENST00000374730 DDX3YO15523 660 aaKnown RBP7.37□□□□□ -1.23
USP48-202ENST00000374730 EIF4EBP3O60516 100 aaPredicted RBP7.37□□□□□ -1.23
USP48-202ENST00000374730 IKBKEQ14164 716 aa7.37□□□□□ -1.23
USP48-202ENST00000374730 SLC7A3Q8WY07 619 aa7.37□□□□□ -1.23
USP48-202ENST00000374730 UBL7Q96S82 380 aaPredicted RBP7.37□□□□□ -1.23
USP48-202ENST00000374730 GNEQ9Y223 722 aaKnown RBP7.37□□□□□ -1.23
USP48-202ENST00000374730 RUSC2Q8N2Y8 1516 aa7.37□□□□□ -1.23
USP48-202ENST00000374730 CEP164Q9UPV0 1460 aa7.36□□□□□ -1.23
USP48-202ENST00000374730 ANKRD34AQ69YU3 496 aa7.36□□□□□ -1.23
USP48-202ENST00000374730 CCNJLQ8IV13 435 aa7.36□□□□□ -1.23
USP48-202ENST00000374730 ASAP3Q8TDY4 903 aa7.36□□□□□ -1.23
USP48-202ENST00000374730 FAM46AQ96IP4 442 aaKnown RBP7.36□□□□□ -1.23
USP48-202ENST00000374730 RNF208Q9H0X6 261 aa7.36□□□□□ -1.23
USP48-202ENST00000374730 A0A1W2PP55 124 aa7.35□□□□□ -1.23
USP48-202ENST00000374730 SCO2A0A1W2PP80 73 aa7.35□□□□□ -1.23
USP48-202ENST00000374730 SOX1O00570 391 aaPredicted RBP7.35□□□□□ -1.23
USP48-202ENST00000374730 DHX15O43143 795 aaKnown RBP7.35□□□□□ -1.23
USP48-202ENST00000374730 CPNE3O75131 537 aaKnown RBP7.35□□□□□ -1.23
USP48-202ENST00000374730 BRD1O95696 1058 aa7.35□□□□□ -1.23
USP48-202ENST00000374730 IGHA2P01877 340 aa7.35□□□□□ -1.23
USP48-202ENST00000374730 POLR3DP05423 398 aaPredicted RBP7.35□□□□□ -1.23
USP48-202ENST00000374730 ESRRAP11474 423 aaPredicted RBP7.35□□□□□ -1.23
USP48-202ENST00000374730 NLRP12P59046 1061 aa7.35□□□□□ -1.23
USP48-202ENST00000374730 KIAA0319Q5VV43 1072 aa7.35□□□□□ -1.23
USP48-202ENST00000374730 ARMC10Q8N2F6 343 aa7.35□□□□□ -1.23
USP48-202ENST00000374730 RAXQ9Y2V3 346 aa7.35□□□□□ -1.23
USP48-202ENST00000374730 SOWAHDA6NJG2 315 aa7.34□□□□□ -1.23
USP48-202ENST00000374730 GSC2O15499 205 aa7.34□□□□□ -1.23
USP48-202ENST00000374730 FSTP19883 344 aa7.34□□□□□ -1.23
USP48-202ENST00000374730 ARTNQ5T4W7 220 aa7.34□□□□□ -1.23
USP48-202ENST00000374730 UTP4Q969X6 686 aaKnown RBP7.34□□□□□ -1.23
USP48-202ENST00000374730 ALKBH8Q96BT7 664 aaKnown RBP7.34□□□□□ -1.23
USP48-202ENST00000374730 DMRTB1Q96MA1 342 aa7.34□□□□□ -1.23
USP48-202ENST00000374730 TCF12Q99081 682 aa7.34□□□□□ -1.23
USP48-202ENST00000374730 RUSC1Q9BVN2 902 aa7.34□□□□□ -1.23
USP48-202ENST00000374730 RBCK1Q9BYM8 510 aa7.34□□□□□ -1.23
USP48-202ENST00000374730 DNAJC25Q9H1X3 360 aa7.34□□□□□ -1.23
USP48-202ENST00000374730 LIN7BQ9HAP6 207 aa7.34□□□□□ -1.23
USP48-202ENST00000374730 RNF112Q9ULX5 631 aa7.34□□□□□ -1.23
USP48-202ENST00000374730 CFTRP13569 1480 aa7.33□□□□□ -1.24
USP48-202ENST00000374730 A0A096LPE4 126 aa7.33□□□□□ -1.24
USP48-202ENST00000374730 A0A1W2PPZ6 126 aa7.33□□□□□ -1.24
USP48-202ENST00000374730 MEGF11A6BM72 1044 aa7.33□□□□□ -1.24
USP48-202ENST00000374730 GPR182O15218 404 aa7.33□□□□□ -1.24
USP48-202ENST00000374730 LRP8Q14114 963 aa7.33□□□□□ -1.24
USP48-202ENST00000374730 HGSNATQ68CP4 663 aa7.33□□□□□ -1.24
USP48-202ENST00000374730 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.33□□□□□ -1.24
USP48-202ENST00000374730 MYRFLQ96LU7 910 aa7.33□□□□□ -1.24
USP48-202ENST00000374730 CLEC4MQ9H2X3 399 aaPredicted RBP7.33□□□□□ -1.24
USP48-202ENST00000374730 METTL12A8MUP2 240 aa7.32□□□□□ -1.24
USP48-202ENST00000374730 ZEB1P37275 1124 aaPredicted RBP7.32□□□□□ -1.24
USP48-202ENST00000374730 ORC1Q13415 861 aa7.32□□□□□ -1.24
USP48-202ENST00000374730 USPL1Q5W0Q7 1092 aa7.32□□□□□ -1.24
USP48-202ENST00000374730 FDX2Q6P4F2 183 aa7.32□□□□□ -1.24
USP48-202ENST00000374730 ZFP64Q9NPA5 681 aa7.32□□□□□ -1.24
USP48-202ENST00000374730 HIF3AQ9Y2N7 669 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms