RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 SLC9C2Q5TAH2 1124 aa24.48■■□□□ 1.51
CCDC88B-203ENST00000359902 CCDC102BQ68D86 513 aa24.48■■□□□ 1.51
CCDC88B-203ENST00000359902 INTS5Q6P9B9 1019 aaKnown RBP24.48■■□□□ 1.51
CCDC88B-203ENST00000359902 TNMDQ9H2S6 317 aa24.48■■□□□ 1.51
CCDC88B-203ENST00000359902 PRC1O43663 620 aa24.47■■□□□ 1.51
CCDC88B-203ENST00000359902 PHKA1P46020 1223 aa24.47■■□□□ 1.51
CCDC88B-203ENST00000359902 SLIT2O94813 1529 aa24.47■■□□□ 1.51
CCDC88B-203ENST00000359902 WNK3Q9BYP7 1800 aa24.47■■□□□ 1.51
CCDC88B-203ENST00000359902 DOT1LQ8TEK3 1739 aa24.47■■□□□ 1.51
CCDC88B-203ENST00000359902 ZNF213O14771 459 aa24.47■■□□□ 1.51
CCDC88B-203ENST00000359902 PPFIA3O75145 1194 aa24.47■■□□□ 1.51
CCDC88B-203ENST00000359902 NR1I2O75469 434 aa24.47■■□□□ 1.51
CCDC88B-203ENST00000359902 AK7Q96M32 723 aa24.47■■□□□ 1.51
CCDC88B-203ENST00000359902 CLSTN2Q9H4D0 955 aa24.47■■□□□ 1.51
CCDC88B-203ENST00000359902 AHDC1Q5TGY3 1603 aaPredicted RBP24.47■■□□□ 1.51
CCDC88B-203ENST00000359902 FDPSP14324 419 aaKnown RBP24.46■■□□□ 1.51
CCDC88B-203ENST00000359902 ARID4AP29374 1257 aaPredicted RBP24.46■■□□□ 1.51
CCDC88B-203ENST00000359902 RBM43Q6ZSC3 357 aaKnown RBP24.46■■□□□ 1.51
CCDC88B-203ENST00000359902 NCOA7Q8NI08 942 aa24.46■■□□□ 1.51
CCDC88B-203ENST00000359902 CDCA7Q9BWT1 371 aaPredicted RBP24.46■■□□□ 1.51
CCDC88B-203ENST00000359902 FGFR2P21802 821 aa24.46■■□□□ 1.51
CCDC88B-203ENST00000359902 ANTXR2P58335 489 aa24.46■■□□□ 1.51
CCDC88B-203ENST00000359902 TYRO3Q06418 890 aa24.46■■□□□ 1.51
CCDC88B-203ENST00000359902 SUSD4Q5VX71 490 aa24.46■■□□□ 1.51
CCDC88B-203ENST00000359902 BICD2Q8TD16 824 aa24.46■■□□□ 1.51
CCDC88B-203ENST00000359902 RCOR1Q9UKL0 485 aa24.46■■□□□ 1.51
CCDC88B-203ENST00000359902 MRVI1Q9Y6F6 885 aa24.46■■□□□ 1.51
CCDC88B-203ENST00000359902 MROH5Q6ZUA9 1318 aa24.45■■□□□ 1.51
CCDC88B-203ENST00000359902 UBE3CQ15386 1083 aa24.45■■□□□ 1.51
CCDC88B-203ENST00000359902 PUM3Q15397 648 aaKnown RBP24.45■■□□□ 1.51
CCDC88B-203ENST00000359902 CKAP2LQ8IYA6 745 aa24.45■■□□□ 1.51
CCDC88B-203ENST00000359902 HELBQ8NG08 1087 aaPredicted RBP24.45■■□□□ 1.51
CCDC88B-203ENST00000359902 LPIN2Q92539 896 aa24.45■■□□□ 1.51
CCDC88B-203ENST00000359902 CCDC87Q9NVE4 849 aa24.45■■□□□ 1.51
CCDC88B-203ENST00000359902 CARMIL3Q8ND23 1372 aa24.45■■□□□ 1.5
CCDC88B-203ENST00000359902 AP5Z1O43299 807 aa24.45■■□□□ 1.5
CCDC88B-203ENST00000359902 CEBPZQ03701 1054 aaKnown RBP24.45■■□□□ 1.5
CCDC88B-203ENST00000359902 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP24.45■■□□□ 1.5
CCDC88B-203ENST00000359902 ATRNO75882 1429 aa24.44■■□□□ 1.5
CCDC88B-203ENST00000359902 SPATA31A1Q5TZJ5 1347 aa24.44■■□□□ 1.5
CCDC88B-203ENST00000359902 IDH1O75874 414 aaKnown RBP24.44■■□□□ 1.5
CCDC88B-203ENST00000359902 UQCRFS1P1P0C7P4 283 aa24.44■■□□□ 1.5
CCDC88B-203ENST00000359902 DDB1Q16531 1140 aa24.44■■□□□ 1.5
CCDC88B-203ENST00000359902 PDZRN4Q6ZMN7 1036 aaPredicted RBP24.44■■□□□ 1.5
CCDC88B-203ENST00000359902 RALYLQ86SE5 291 aaKnown RBP24.44■■□□□ 1.5
CCDC88B-203ENST00000359902 NBPF3Q9H094 633 aa24.44■■□□□ 1.5
CCDC88B-203ENST00000359902 HPS5Q9UPZ3 1129 aa24.44■■□□□ 1.5
CCDC88B-203ENST00000359902 LRP5O75197 1615 aa24.43■■□□□ 1.5
CCDC88B-203ENST00000359902 CRKLP46109 303 aaKnown RBP24.43■■□□□ 1.5
CCDC88B-203ENST00000359902 GUCY1B3Q02153 619 aa24.43■■□□□ 1.5
CCDC88B-203ENST00000359902 ATL3Q6DD88 541 aa24.43■■□□□ 1.5
CCDC88B-203ENST00000359902 FAM200AQ8TCP9 573 aa24.43■■□□□ 1.5
CCDC88B-203ENST00000359902 FTOQ9C0B1 505 aaKnown RBP eCLIP24.43■■□□□ 1.5
CCDC88B-203ENST00000359902 WDR19Q8NEZ3 1342 aa24.43■■□□□ 1.5
CCDC88B-203ENST00000359902 ZNF532Q9HCE3 1301 aa24.43■■□□□ 1.5
CCDC88B-203ENST00000359902 KLF18A0A0U1RQI7 1052 aa24.43■■□□□ 1.5
CCDC88B-203ENST00000359902 ATP6V1AP38606 617 aa24.43■■□□□ 1.5
CCDC88B-203ENST00000359902 ILDR1Q86SU0 546 aaPredicted RBP24.43■■□□□ 1.5
CCDC88B-203ENST00000359902 MYH15Q9Y2K3 1946 aa24.42■■□□□ 1.5
CCDC88B-203ENST00000359902 ADAMTS2O95450 1211 aa24.42■■□□□ 1.5
CCDC88B-203ENST00000359902 PDE6AP16499 860 aa24.42■■□□□ 1.5
CCDC88B-203ENST00000359902 MPNDQ8N594 471 aa24.42■■□□□ 1.5
CCDC88B-203ENST00000359902 ACSBG1Q96GR2 724 aa24.42■■□□□ 1.5
CCDC88B-203ENST00000359902 USP28Q96RU2 1077 aa24.42■■□□□ 1.5
CCDC88B-203ENST00000359902 THRAP3Q9Y2W1 955 aaKnown RBP24.42■■□□□ 1.5
CCDC88B-203ENST00000359902 MYO5AQ9Y4I1 1855 aaKnown RBP24.42■■□□□ 1.5
CCDC88B-203ENST00000359902 TCRBV5S4A2TA0A5A2 114 aa24.41■■□□□ 1.5
CCDC88B-203ENST00000359902 ZNF396Q96N95 335 aaPredicted RBP24.41■■□□□ 1.5
CCDC88B-203ENST00000359902 UTP14AQ9BVJ6 771 aaKnown RBP24.41■■□□□ 1.5
CCDC88B-203ENST00000359902 WWC3Q9ULE0 1092 aa24.41■■□□□ 1.5
CCDC88B-203ENST00000359902 A0A0G2JS52 829 aa24.4■■□□□ 1.5
CCDC88B-203ENST00000359902 FAM177BA6PVY3 158 aa24.4■■□□□ 1.5
CCDC88B-203ENST00000359902 GOLGA8BA8MQT2 603 aa24.4■■□□□ 1.5
CCDC88B-203ENST00000359902 DHX16O60231 1041 aaKnown RBP24.4■■□□□ 1.5
CCDC88B-203ENST00000359902 PLCB2Q00722 1185 aa24.4■■□□□ 1.5
CCDC88B-203ENST00000359902 MARCH10Q8NA82 808 aaPredicted RBP24.4■■□□□ 1.5
CCDC88B-203ENST00000359902 LOC102724428A0A0B4J2F2 783 aa24.4■■□□□ 1.5
CCDC88B-203ENST00000359902 CAMTA2O94983 1202 aa24.4■■□□□ 1.5
CCDC88B-203ENST00000359902 SIK1P57059 783 aa24.4■■□□□ 1.5
CCDC88B-203ENST00000359902 SEC31BQ9NQW1 1179 aa24.4■■□□□ 1.5
CCDC88B-203ENST00000359902 DDX60Q8IY21 1712 aaKnown RBP24.39■■□□□ 1.5
CCDC88B-203ENST00000359902 ITPK1Q13572 414 aa24.39■■□□□ 1.5
CCDC88B-203ENST00000359902 TBC1D10CQ8IV04 446 aa24.39■■□□□ 1.5
CCDC88B-203ENST00000359902 DENND2AQ9ULE3 1009 aa24.39■■□□□ 1.5
CCDC88B-203ENST00000359902 SNAP23O00161 211 aa24.39■■□□□ 1.49
CCDC88B-203ENST00000359902 APPP05067 770 aa24.39■■□□□ 1.49
CCDC88B-203ENST00000359902 SLC5A1P13866 664 aa24.39■■□□□ 1.49
CCDC88B-203ENST00000359902 ANO6Q4KMQ2 910 aa24.39■■□□□ 1.49
CCDC88B-203ENST00000359902 SPATA5Q8NB90 893 aa24.39■■□□□ 1.49
CCDC88B-203ENST00000359902 TRDNQ13061 729 aa24.38■■□□□ 1.49
CCDC88B-203ENST00000359902 NKX2-3Q8TAU0 364 aa24.38■■□□□ 1.49
CCDC88B-203ENST00000359902 ZNF830Q96NB3 372 aaPredicted RBP24.38■■□□□ 1.49
CCDC88B-203ENST00000359902 STRBPQ96SI9 672 aaKnown RBP24.38■■□□□ 1.49
CCDC88B-203ENST00000359902 MPHOSPH8Q99549 860 aa24.38■■□□□ 1.49
CCDC88B-203ENST00000359902 PARP10Q53GL7 1025 aa24.38■■□□□ 1.49
CCDC88B-203ENST00000359902 CCAR1Q8IX12 1150 aaKnown RBP24.38■■□□□ 1.49
CCDC88B-203ENST00000359902 LUZP1Q86V48 1076 aa24.37■■□□□ 1.49
CCDC88B-203ENST00000359902 RAB11FIP4Q86YS3 637 aa24.37■■□□□ 1.49
CCDC88B-203ENST00000359902 CBX8Q9HC52 389 aa24.37■■□□□ 1.49
CCDC88B-203ENST00000359902 ARAP2Q8WZ64 1704 aa24.37■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms