RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 KRT28Q7Z3Y7 464 aa22.25■■□□□ 1.15
RTN4-201ENST00000317610 KCNG4Q8TDN1 519 aa22.25■■□□□ 1.15
RTN4-201ENST00000317610 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.25■■□□□ 1.154e-6■■□□□ 11.4
RTN4-201ENST00000317610 DCAF5Q96JK2 942 aa22.25■■□□□ 1.15
RTN4-201ENST00000317610 POLR3EQ9NVU0 708 aa22.25■■□□□ 1.15
RTN4-201ENST00000317610 KCNJ6P48051 423 aa22.25■■□□□ 1.15
RTN4-201ENST00000317610 NDUFA8P51970 172 aa22.25■■□□□ 1.15
RTN4-201ENST00000317610 SDF4Q9BRK5 362 aa22.25■■□□□ 1.15
RTN4-201ENST00000317610 COL18A1P39060 1754 aa22.24■■□□□ 1.15
RTN4-201ENST00000317610 A0A1B0GVL5 298 aa22.24■■□□□ 1.15
RTN4-201ENST00000317610 TIMM10P62072 90 aa22.24■■□□□ 1.15
RTN4-201ENST00000317610 ERCC4Q92889 916 aaPredicted RBP22.24■■□□□ 1.15
RTN4-201ENST00000317610 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.24■■□□□ 1.15
RTN4-201ENST00000317610 DHX8Q14562 1220 aaKnown RBP22.24■■□□□ 1.15
RTN4-201ENST00000317610 CCDC150Q8NCX0 1101 aa22.24■■□□□ 1.15
RTN4-201ENST00000317610 NLRP2Q9NX02 1062 aa22.24■■□□□ 1.15
RTN4-201ENST00000317610 TRMT1Q9NXH9 659 aaKnown RBP22.24■■□□□ 1.15
RTN4-201ENST00000317610 M0R2C6 588 aa22.23■■□□□ 1.15
RTN4-201ENST00000317610 DPCR1Q3MIW9 517 aa22.23■■□□□ 1.15
RTN4-201ENST00000317610 KMT5BQ4FZB7 885 aa22.23■■□□□ 1.15
RTN4-201ENST00000317610 CHST3Q7LGC8 479 aa22.23■■□□□ 1.15
RTN4-201ENST00000317610 FAM53CQ9NYF3 392 aa22.23■■□□□ 1.15
RTN4-201ENST00000317610 NAP1L2Q9ULW6 460 aaPredicted RBP22.23■■□□□ 1.15
RTN4-201ENST00000317610 CCDC9Q9Y3X0 531 aaKnown RBP22.23■■□□□ 1.15
RTN4-201ENST00000317610 IFIT1P09914 478 aaKnown RBP22.23■■□□□ 1.15
RTN4-201ENST00000317610 CLIC4Q9Y696 253 aa22.23■■□□□ 1.15
RTN4-201ENST00000317610 SLU7O95391 586 aaKnown RBP22.22■■□□□ 1.15
RTN4-201ENST00000317610 STK38Q15208 465 aa22.22■■□□□ 1.15
RTN4-201ENST00000317610 BRAPQ7Z569 592 aa22.22■■□□□ 1.15
RTN4-201ENST00000317610 RGS22Q8NE09 1264 aa22.22■■□□□ 1.15
RTN4-201ENST00000317610 PARP4Q9UKK3 1724 aaKnown RBP22.22■■□□□ 1.15
RTN4-201ENST00000317610 PSDA5PKW4 1024 aaPredicted RBP22.22■■□□□ 1.15
RTN4-201ENST00000317610 EYA2O00167 538 aa22.22■■□□□ 1.15
RTN4-201ENST00000317610 CIAO1O76071 339 aa22.22■■□□□ 1.15
RTN4-201ENST00000317610 E4F1Q66K89 784 aaPredicted RBP22.22■■□□□ 1.15
RTN4-201ENST00000317610 TTLL5Q6EMB2 1281 aa22.22■■□□□ 1.15
RTN4-201ENST00000317610 L2HGDHQ9H9P8 463 aa22.22■■□□□ 1.15
RTN4-201ENST00000317610 CYP27B1O15528 508 aa22.21■■□□□ 1.15
RTN4-201ENST00000317610 PPFIA3O75145 1194 aa22.21■■□□□ 1.15
RTN4-201ENST00000317610 ZC3H6P61129 1189 aaKnown RBP22.21■■□□□ 1.15
RTN4-201ENST00000317610 FBXO18Q8NFZ0 1043 aa22.21■■□□□ 1.15
RTN4-201ENST00000317610 C8orf76Q96K31 380 aa22.21■■□□□ 1.15
RTN4-201ENST00000317610 SPTLC2O15270 562 aa22.2■■□□□ 1.15
RTN4-201ENST00000317610 NLRP12P59046 1061 aa22.2■■□□□ 1.15
RTN4-201ENST00000317610 ARMCX5Q6P1M9 558 aa22.2■■□□□ 1.15
RTN4-201ENST00000317610 OSBP2Q969R2 916 aa22.2■■□□□ 1.15
RTN4-201ENST00000317610 XPO4Q9C0E2 1151 aaKnown RBP22.2■■□□□ 1.15
RTN4-201ENST00000317610 ATG3Q9NT62 314 aa22.2■■□□□ 1.15
RTN4-201ENST00000317610 CWC25Q9NXE8 425 aaPredicted RBP22.2■■□□□ 1.15
RTN4-201ENST00000317610 FOXP2O15409 715 aa22.2■■□□□ 1.14
RTN4-201ENST00000317610 SF3A1Q15459 793 aaKnown RBP22.2■■□□□ 1.14
RTN4-201ENST00000317610 MYSM1Q5VVJ2 828 aa22.2■■□□□ 1.14
RTN4-201ENST00000317610 DHX16O60231 1041 aaKnown RBP22.19■■□□□ 1.14
RTN4-201ENST00000317610 TUBB4AP04350 444 aa22.19■■□□□ 1.14
RTN4-201ENST00000317610 NCAPHQ15003 741 aa22.19■■□□□ 1.14
RTN4-201ENST00000317610 PPP1R13BQ96KQ4 1090 aa22.19■■□□□ 1.14
RTN4-201ENST00000317610 GPHNQ9NQX3 736 aaPredicted RBP22.19■■□□□ 1.14
RTN4-201ENST00000317610 HPS5Q9UPZ3 1129 aa22.19■■□□□ 1.14
RTN4-201ENST00000317610 A0A1B0GUL7 405 aa22.19■■□□□ 1.14
RTN4-201ENST00000317610 SLC3A2P08195 630 aaKnown RBP22.19■■□□□ 1.14
RTN4-201ENST00000317610 C4AP0C0L4 1744 aa22.19■■□□□ 1.14
RTN4-201ENST00000317610 C4BP0C0L5 1744 aa22.19■■□□□ 1.14
RTN4-201ENST00000317610 LRRC24Q50LG9 513 aa22.19■■□□□ 1.14
RTN4-201ENST00000317610 OTUD7BQ6GQQ9 843 aa22.19■■□□□ 1.14
RTN4-201ENST00000317610 MB21D2Q8IYB1 491 aaPredicted RBP22.19■■□□□ 1.14
RTN4-201ENST00000317610 IFNKQ9P0W0 207 aa22.19■■□□□ 1.14
RTN4-201ENST00000317610 NBPF26B4DH59 902 aa22.18■■□□□ 1.14
RTN4-201ENST00000317610 ZRSR1Q15695 479 aaKnown RBP22.18■■□□□ 1.14
RTN4-201ENST00000317610 AXDND1Q5T1B0 1012 aaPredicted RBP22.18■■□□□ 1.14
RTN4-201ENST00000317610 NBPF14Q5TI25 921 aa22.18■■□□□ 1.14
RTN4-201ENST00000317610 NBPF10Q6P3W6 841 aaKnown RBP22.18■■□□□ 1.14
RTN4-201ENST00000317610 FBXO38Q6PIJ6 1188 aa22.18■■□□□ 1.14
RTN4-201ENST00000317610 KRT222Q8N1A0 295 aa22.18■■□□□ 1.14
RTN4-201ENST00000317610 NBPF15Q8N660 670 aa22.18■■□□□ 1.14
RTN4-201ENST00000317610 FBXW7Q969H0 707 aa22.18■■□□□ 1.14
RTN4-201ENST00000317610 ADAMTSL3P82987 1691 aa22.18■■□□□ 1.14
RTN4-201ENST00000317610 C1orf167Q5SNV9 1468 aa22.18■■□□□ 1.14
RTN4-201ENST00000317610 ZNF202O95125 648 aa22.18■■□□□ 1.14
RTN4-201ENST00000317610 ELF2Q15723 593 aa22.18■■□□□ 1.14
RTN4-201ENST00000317610 LRRFIP1Q32MZ4 808 aaKnown RBP22.18■■□□□ 1.14
RTN4-201ENST00000317610 TMC6Q7Z403 805 aa22.18■■□□□ 1.14
RTN4-201ENST00000317610 WDR19Q8NEZ3 1342 aa22.17■■□□□ 1.14
RTN4-201ENST00000317610 SMC2O95347 1197 aa22.17■■□□□ 1.14
RTN4-201ENST00000317610 CMA1P23946 247 aa22.17■■□□□ 1.14
RTN4-201ENST00000317610 TPM4P67936 248 aa22.17■■□□□ 1.14
RTN4-201ENST00000317610 ORC3Q9UBD5 711 aaPredicted RBP22.17■■□□□ 1.14
RTN4-201ENST00000317610 IKBKBO14920 756 aa22.17■■□□□ 1.14
RTN4-201ENST00000317610 POLR3DP05423 398 aaPredicted RBP22.17■■□□□ 1.14
RTN4-201ENST00000317610 SLFN14P0C7P3 912 aa22.17■■□□□ 1.14
RTN4-201ENST00000317610 SFPQP23246 707 aaKnown RBP eCLIP22.17■■□□□ 1.142e-6■■■□□ 15.5
RTN4-201ENST00000317610 IMMTQ16891 758 aaKnown RBP22.17■■□□□ 1.14
RTN4-201ENST00000317610 CCDC93Q567U6 631 aa22.17■■□□□ 1.14
RTN4-201ENST00000317610 PRC1O43663 620 aa22.16■■□□□ 1.14
RTN4-201ENST00000317610 ZFYP08048 801 aaPredicted RBP22.16■■□□□ 1.14
RTN4-201ENST00000317610 ANO1Q5XXA6 986 aa22.16■■□□□ 1.14
RTN4-201ENST00000317610 NOL12Q9UGY1 213 aaKnown RBP eCLIP22.16■■□□□ 1.14
RTN4-201ENST00000317610 V9GYY5 206 aaPredicted RBP22.16■■□□□ 1.14
RTN4-201ENST00000317610 KLF18A0A0U1RQI7 1052 aa22.15■■□□□ 1.14
RTN4-201ENST00000317610 CABP4P57796 275 aa22.15■■□□□ 1.14
RTN4-201ENST00000317610 KIF23Q02241 960 aaPredicted RBP22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms