RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 GNAQP50148 359 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 RAB3GAP1Q15042 981 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 AFAP1L2Q8N4X5 818 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 F6X3S4 739 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 SATB1Q01826 763 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 NECAB1Q8N987 351 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 TACC3Q9Y6A5 838 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 SYNJ2O15056 1496 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 CCDC141Q6ZP82 1450 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 C8orf74Q6P047 294 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 PRDM11Q9NQV5 511 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 TMOD3Q9NYL9 352 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 FAM13AO94988 1023 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 BRF1Q92994 677 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 CRCPO75575 148 aa15.6■□□□□ 0.09
CSPG4-201ENST00000308508 RASSF2P50749 326 aa15.6■□□□□ 0.09
CSPG4-201ENST00000308508 TERF1P54274 439 aa15.6■□□□□ 0.09
CSPG4-201ENST00000308508 NUTM2AQ8IVF1 878 aaPredicted RBP15.6■□□□□ 0.09
CSPG4-201ENST00000308508 THUMPD2Q9BTF0 503 aaKnown RBP15.6■□□□□ 0.09
CSPG4-201ENST00000308508 SUDS3Q9H7L9 328 aaPredicted RBP15.6■□□□□ 0.09
CSPG4-201ENST00000308508 FLIIQ13045 1269 aa15.6■□□□□ 0.09
CSPG4-201ENST00000308508 PDE1CQ14123 709 aaPredicted RBP15.6■□□□□ 0.09
CSPG4-201ENST00000308508 CRNKL1Q9BZJ0 848 aaKnown RBP15.6■□□□□ 0.09
CSPG4-201ENST00000308508 SLC52A1Q9NWF4 448 aa15.6■□□□□ 0.09
CSPG4-201ENST00000308508 ZNF131P52739 623 aa15.6■□□□□ 0.09
CSPG4-201ENST00000308508 CAMSAP2Q08AD1 1489 aa15.6■□□□□ 0.09
CSPG4-201ENST00000308508 RAD54L2Q9Y4B4 1467 aa15.6■□□□□ 0.09
CSPG4-201ENST00000308508 FGD5Q6ZNL6 1462 aa15.6■□□□□ 0.09
CSPG4-201ENST00000308508 ZNF365Q70YC5 407 aa15.6■□□□□ 0.09
CSPG4-201ENST00000308508 ESR2Q92731 530 aa15.6■□□□□ 0.09
CSPG4-201ENST00000308508 DHX58Q96C10 678 aa15.6■□□□□ 0.09
CSPG4-201ENST00000308508 PLCB1Q9NQ66 1216 aa15.6■□□□□ 0.09
CSPG4-201ENST00000308508 TRIM75PA6NK02 468 aa15.59■□□□□ 0.09
CSPG4-201ENST00000308508 GEN1Q17RS7 908 aa15.59■□□□□ 0.09
CSPG4-201ENST00000308508 WDR78Q5VTH9 848 aa15.59■□□□□ 0.09
CSPG4-201ENST00000308508 ATL3Q6DD88 541 aa15.59■□□□□ 0.09
CSPG4-201ENST00000308508 PIK3R4Q99570 1358 aa15.59■□□□□ 0.09
CSPG4-201ENST00000308508 ERCC3P19447 782 aa15.59■□□□□ 0.09
CSPG4-201ENST00000308508 CALML3P27482 149 aa15.59■□□□□ 0.09
CSPG4-201ENST00000308508 TRMT112Q9UI30 125 aaKnown RBP15.59■□□□□ 0.09
CSPG4-201ENST00000308508 TRMT1LQ7Z2T5 733 aaKnown RBP15.59■□□□□ 0.09
CSPG4-201ENST00000308508 NPHP3Q7Z494 1330 aa15.59■□□□□ 0.09
CSPG4-201ENST00000308508 CABP5Q9NP86 173 aa15.59■□□□□ 0.09
CSPG4-201ENST00000308508 TTF2Q9UNY4 1162 aaKnown RBP15.59■□□□□ 0.09
CSPG4-201ENST00000308508 SDSP20132 328 aa15.59■□□□□ 0.09
CSPG4-201ENST00000308508 PFDN4Q9NQP4 134 aa15.59■□□□□ 0.09
CSPG4-201ENST00000308508 GOLGA6BA6NDN3 693 aa15.59■□□□□ 0.09
CSPG4-201ENST00000308508 GSTO1P78417 241 aa15.59■□□□□ 0.09
CSPG4-201ENST00000308508 Q6ZUG5 572 aa15.59■□□□□ 0.09
CSPG4-201ENST00000308508 BRAPQ7Z569 592 aa15.59■□□□□ 0.09
CSPG4-201ENST00000308508 RPGRQ92834 1020 aaKnown RBP15.59■□□□□ 0.09
CSPG4-201ENST00000308508 IRX4P78413 519 aa15.58■□□□□ 0.09
CSPG4-201ENST00000308508 GBP5Q96PP8 586 aa15.58■□□□□ 0.09
CSPG4-201ENST00000308508 DDX27Q96GQ7 796 aaKnown RBP15.58■□□□□ 0.08
CSPG4-201ENST00000308508 TSPY3P0CV98 308 aa15.58■□□□□ 0.08
CSPG4-201ENST00000308508 TSPY8P0CW00 308 aa15.58■□□□□ 0.08
CSPG4-201ENST00000308508 ERCC5P28715 1186 aaPredicted RBP15.58■□□□□ 0.08
CSPG4-201ENST00000308508 PPFIA1Q13136 1202 aa15.58■□□□□ 0.08
CSPG4-201ENST00000308508 VWA3BQ502W6 1294 aa15.58■□□□□ 0.08
CSPG4-201ENST00000308508 CETN3O15182 167 aa15.58■□□□□ 0.08
CSPG4-201ENST00000308508 PPFIA2O75334 1257 aa15.58■□□□□ 0.08
CSPG4-201ENST00000308508 U2AF2P26368 475 aaKnown RBP eCLIP15.58■□□□□ 0.08
CSPG4-201ENST00000308508 UAP1Q16222 522 aaPredicted RBP15.58■□□□□ 0.08
CSPG4-201ENST00000308508 HS2ST1Q7LGA3 356 aa15.58■□□□□ 0.08
CSPG4-201ENST00000308508 BCAP29Q9UHQ4 241 aa15.58■□□□□ 0.08
CSPG4-201ENST00000308508 HEATR3Q7Z4Q2 680 aa15.58■□□□□ 0.08
CSPG4-201ENST00000308508 RAB3IPQ96QF0 476 aaPredicted RBP15.58■□□□□ 0.08
CSPG4-201ENST00000308508 PPP1R2P41236 205 aa15.57■□□□□ 0.08
CSPG4-201ENST00000308508 CYP26C1Q6V0L0 522 aa15.57■□□□□ 0.08
CSPG4-201ENST00000308508 RAB11FIP4Q86YS3 637 aa15.57■□□□□ 0.08
CSPG4-201ENST00000308508 CDC5LQ99459 802 aaKnown RBP15.57■□□□□ 0.08
CSPG4-201ENST00000308508 ESYT1Q9BSJ8 1104 aa15.57■□□□□ 0.08
CSPG4-201ENST00000308508 VCX3AQ9NNX9 186 aa15.57■□□□□ 0.08
CSPG4-201ENST00000308508 MAP3K2Q9Y2U5 619 aa15.57■□□□□ 0.08
CSPG4-201ENST00000308508 VSIG1Q86XK7 387 aa15.57■□□□□ 0.08
CSPG4-201ENST00000308508 MYRIPQ8NFW9 859 aa15.57■□□□□ 0.08
CSPG4-201ENST00000308508 CABS1Q96KC9 395 aa15.57■□□□□ 0.08
CSPG4-201ENST00000308508 KRT2P35908 639 aa15.57■□□□□ 0.08
CSPG4-201ENST00000308508 PPP1R42Q7Z4L9 355 aa15.57■□□□□ 0.08
CSPG4-201ENST00000308508 TSPYL2Q9H2G4 693 aaPredicted RBP15.57■□□□□ 0.08
CSPG4-201ENST00000308508 UBL4BQ8N7F7 174 aa15.57■□□□□ 0.08
CSPG4-201ENST00000308508 TBC1D31Q96DN5 1066 aa15.57■□□□□ 0.08
CSPG4-201ENST00000308508 C6orf50Q9HD87 102 aa15.57■□□□□ 0.08
CSPG4-201ENST00000308508 STX8Q9UNK0 236 aa15.57■□□□□ 0.08
CSPG4-201ENST00000308508 TIAM1Q13009 1591 aa15.57■□□□□ 0.08
CSPG4-201ENST00000308508 UQCRFS1P1P0C7P4 283 aa15.57■□□□□ 0.08
CSPG4-201ENST00000308508 THEMISQ8N1K5 641 aaPredicted RBP15.57■□□□□ 0.08
CSPG4-201ENST00000308508 GABPB2Q8TAK5 448 aaPredicted RBP15.57■□□□□ 0.08
CSPG4-201ENST00000308508 MYL5Q02045 173 aa15.56■□□□□ 0.08
CSPG4-201ENST00000308508 RTL9Q8NET4 1388 aa15.56■□□□□ 0.08
CSPG4-201ENST00000308508 MGEA5O60502 916 aa15.56■□□□□ 0.08
CSPG4-201ENST00000308508 MCMDC2Q4G0Z9 681 aa15.56■□□□□ 0.08
CSPG4-201ENST00000308508 KIFAP3Q92845 792 aa15.56■□□□□ 0.08
CSPG4-201ENST00000308508 INTS4Q96HW7 963 aaKnown RBP15.56■□□□□ 0.08
CSPG4-201ENST00000308508 I3L4J1 428 aa15.56■□□□□ 0.08
CSPG4-201ENST00000308508 CNGA1P29973 690 aa15.56■□□□□ 0.08
CSPG4-201ENST00000308508 FAM135AQ9P2D6 1515 aa15.56■□□□□ 0.08
CSPG4-201ENST00000308508 RBM8AQ9Y5S9 174 aaKnown RBP15.56■□□□□ 0.08
CSPG4-201ENST00000308508 ELP1O95163 1332 aa15.56■□□□□ 0.08
CSPG4-201ENST00000308508 PRR16Q569H4 304 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms