RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 CCDC102AQ96A19 550 aa27.92■■■□□ 2.06
VTI1B-201ENST00000216456 USP44Q9H0E7 712 aa27.92■■■□□ 2.06
VTI1B-201ENST00000216456 RIPOR2Q9Y4F9 1068 aa27.92■■■□□ 2.06
VTI1B-201ENST00000216456 PTPRCP08575 1304 aa27.92■■■□□ 2.06
VTI1B-201ENST00000216456 PRKG1Q13976 671 aa27.91■■■□□ 2.06
VTI1B-201ENST00000216456 RABL6Q3YEC7 729 aaPredicted RBP27.91■■■□□ 2.06
VTI1B-201ENST00000216456 HDAC9Q9UKV0 1011 aa27.91■■■□□ 2.06
VTI1B-201ENST00000216456 TRMT2AQ8IZ69 625 aaKnown RBP27.9■■■□□ 2.06
VTI1B-201ENST00000216456 ABHD8Q96I13 439 aa27.9■■■□□ 2.06
VTI1B-201ENST00000216456 SMC4Q9NTJ3 1288 aa27.9■■■□□ 2.06
VTI1B-201ENST00000216456 PAPPA2Q9BXP8 1791 aa27.89■■■□□ 2.06
VTI1B-201ENST00000216456 CSRNP1Q96S65 589 aa27.89■■■□□ 2.06
VTI1B-201ENST00000216456 CASP8AP2Q9UKL3 1982 aa27.88■■■□□ 2.05
VTI1B-201ENST00000216456 TTLL12Q14166 644 aaPredicted RBP27.88■■■□□ 2.05
VTI1B-201ENST00000216456 FAM84BQ96KN1 310 aaPredicted RBP27.88■■■□□ 2.05
VTI1B-201ENST00000216456 IQSEC3Q9UPP2 1182 aaPredicted RBP27.88■■■□□ 2.05
VTI1B-201ENST00000216456 CLRN2A0PK11 232 aa27.87■■■□□ 2.05
VTI1B-201ENST00000216456 CA12O43570 354 aa27.87■■■□□ 2.05
VTI1B-201ENST00000216456 DLGAP5Q15398 846 aa27.87■■■□□ 2.05
VTI1B-201ENST00000216456 CFAP100Q494V2 611 aa27.87■■■□□ 2.05
VTI1B-201ENST00000216456 TRPA1O75762 1119 aa27.86■■■□□ 2.05
VTI1B-201ENST00000216456 MKRN3Q13064 507 aaKnown RBP27.86■■■□□ 2.05
VTI1B-201ENST00000216456 UBE4AQ14139 1066 aa27.86■■■□□ 2.05
VTI1B-201ENST00000216456 TDRD7Q8NHU6 1098 aaKnown RBP27.86■■■□□ 2.05
VTI1B-201ENST00000216456 PRMT6Q96LA8 375 aaPredicted RBP27.86■■■□□ 2.05
VTI1B-201ENST00000216456 RNF186Q9NXI6 227 aa27.86■■■□□ 2.05
VTI1B-201ENST00000216456 FKBP1BP68106 108 aa27.85■■■□□ 2.05
VTI1B-201ENST00000216456 GRIK5Q16478 980 aa27.85■■■□□ 2.05
VTI1B-201ENST00000216456 ALDH1L2Q3SY69 923 aa27.85■■■□□ 2.05
VTI1B-201ENST00000216456 HIBADHP31937 336 aaKnown RBP27.84■■■□□ 2.05
VTI1B-201ENST00000216456 APOBEC3FQ8IUX4 373 aaKnown RBP27.84■■■□□ 2.05
VTI1B-201ENST00000216456 ZBTB4Q9P1Z0 1013 aaPredicted RBP27.84■■■□□ 2.05
VTI1B-201ENST00000216456 METTL24Q5JXM2 366 aa27.83■■■□□ 2.05
VTI1B-201ENST00000216456 VGLL2Q8N8G2 317 aa27.83■■■□□ 2.05
VTI1B-201ENST00000216456 DEFB129Q9H1M3 183 aa27.83■■■□□ 2.05
VTI1B-201ENST00000216456 NOB1Q9ULX3 412 aaKnown RBP27.83■■■□□ 2.05
VTI1B-201ENST00000216456 FAM205AQ6ZU69 1335 aa27.83■■■□□ 2.05
VTI1B-201ENST00000216456 SPDYE2BA6NHP3 402 aa27.82■■■□□ 2.04
VTI1B-201ENST00000216456 CCER2I3L3R5 266 aa27.82■■■□□ 2.04
VTI1B-201ENST00000216456 SPDYE6P0CI01 402 aa27.82■■■□□ 2.04
VTI1B-201ENST00000216456 PTPN12Q05209 780 aaKnown RBP27.82■■■□□ 2.04
VTI1B-201ENST00000216456 MFSD14BQ5SR56 506 aa27.82■■■□□ 2.04
VTI1B-201ENST00000216456 MTMR14Q8NCE2 650 aa27.82■■■□□ 2.04
VTI1B-201ENST00000216456 MROH5Q6ZUA9 1318 aa27.82■■■□□ 2.04
VTI1B-201ENST00000216456 RFX5P48382 616 aaPredicted RBP27.81■■■□□ 2.04
VTI1B-201ENST00000216456 MMP14P50281 582 aa27.81■■■□□ 2.04
VTI1B-201ENST00000216456 RBM5P52756 815 aaKnown RBP eCLIP27.81■■■□□ 2.04
VTI1B-201ENST00000216456 FKBP1AP62942 108 aaKnown RBP27.81■■■□□ 2.04
VTI1B-201ENST00000216456 MCOLN1Q9GZU1 580 aa27.81■■■□□ 2.04
VTI1B-201ENST00000216456 VEZTQ9HBM0 779 aa27.81■■■□□ 2.04
VTI1B-201ENST00000216456 SSC5DA1L4H1 1573 aa27.81■■■□□ 2.04
VTI1B-201ENST00000216456 CHAF1AQ13111 956 aaPredicted RBP27.8■■■□□ 2.04
VTI1B-201ENST00000216456 FBXO33Q7Z6M2 555 aa27.8■■■□□ 2.04
VTI1B-201ENST00000216456 NF2P35240 595 aa27.79■■■□□ 2.04
VTI1B-201ENST00000216456 ANGEL1Q9UNK9 670 aaKnown RBP27.79■■■□□ 2.04
VTI1B-201ENST00000216456 TTF2Q9UNY4 1162 aaKnown RBP27.79■■■□□ 2.04
VTI1B-201ENST00000216456 PDE8BO95263 885 aa27.78■■■□□ 2.04
VTI1B-201ENST00000216456 BCAMP50895 628 aa27.78■■■□□ 2.04
VTI1B-201ENST00000216456 DGKZQ13574 1117 aa27.77■■■□□ 2.04
VTI1B-201ENST00000216456 SAGE1Q9NXZ1 904 aa27.77■■■□□ 2.04
VTI1B-201ENST00000216456 CCDC85CA6NKD9 419 aa27.76■■■□□ 2.03
VTI1B-201ENST00000216456 NBPF12Q5TAG4 269 aaPredicted RBP27.76■■■□□ 2.03
VTI1B-201ENST00000216456 CDAN1Q8IWY9 1227 aa27.76■■■□□ 2.03
VTI1B-201ENST00000216456 TDRD3Q9H7E2 651 aaKnown RBP27.76■■■□□ 2.03
VTI1B-201ENST00000216456 LDLRAD1Q5T700 205 aa27.75■■■□□ 2.03
VTI1B-201ENST00000216456 ARMC9Q7Z3E5 817 aa27.75■■■□□ 2.03
VTI1B-201ENST00000216456 VPS37DQ86XT2 251 aa27.75■■■□□ 2.03
VTI1B-201ENST00000216456 CLMNQ96JQ2 1002 aa27.75■■■□□ 2.03
VTI1B-201ENST00000216456 RARSP54136 660 aaKnown RBP27.74■■■□□ 2.03
VTI1B-201ENST00000216456 SIL1Q9H173 461 aa27.74■■■□□ 2.03
VTI1B-201ENST00000216456 TNNQ9UQP3 1299 aa27.74■■■□□ 2.03
VTI1B-201ENST00000216456 EYA2O00167 538 aa27.73■■■□□ 2.03
VTI1B-201ENST00000216456 MYO1BO43795 1136 aa27.73■■■□□ 2.03
VTI1B-201ENST00000216456 TBC1D8O95759 1140 aa27.73■■■□□ 2.03
VTI1B-201ENST00000216456 FGFR2P21802 821 aa27.73■■■□□ 2.03
VTI1B-201ENST00000216456 RASA3Q14644 834 aa27.73■■■□□ 2.03
VTI1B-201ENST00000216456 ATG9AQ7Z3C6 839 aa27.73■■■□□ 2.03
VTI1B-201ENST00000216456 ZNF70Q9UC06 446 aaPredicted RBP27.73■■■□□ 2.03
VTI1B-201ENST00000216456 AKAP11Q9UKA4 1901 aa27.73■■■□□ 2.03
VTI1B-201ENST00000216456 ECM29Q5VYK3 1845 aa27.72■■■□□ 2.03
VTI1B-201ENST00000216456 UBTFL1P0CB47 393 aaPredicted RBP27.72■■■□□ 2.03
VTI1B-201ENST00000216456 CRKP46108 304 aa27.72■■■□□ 2.03
VTI1B-201ENST00000216456 MEIS3Q99687 375 aa27.72■■■□□ 2.03
VTI1B-201ENST00000216456 LRRFIP2Q9Y608 721 aaKnown RBP27.72■■■□□ 2.03
VTI1B-201ENST00000216456 COL1A1P02452 1464 aaPredicted RBP27.71■■■□□ 2.03
VTI1B-201ENST00000216456 FRAT2O75474 233 aaPredicted RBP27.71■■■□□ 2.03
VTI1B-201ENST00000216456 SPDYE2Q495Y8 402 aa27.71■■■□□ 2.03
VTI1B-201ENST00000216456 DZIP1LQ8IYY4 767 aaKnown RBP27.71■■■□□ 2.03
VTI1B-201ENST00000216456 SERPINA10Q9UK55 444 aa27.71■■■□□ 2.03
VTI1B-201ENST00000216456 PA2G4Q9UQ80 394 aaKnown RBP27.71■■■□□ 2.03
VTI1B-201ENST00000216456 CT47B1P0C2W7 299 aaPredicted RBP27.7■■■□□ 2.02
VTI1B-201ENST00000216456 PUM3Q15397 648 aaKnown RBP27.7■■■□□ 2.02
VTI1B-201ENST00000216456 CAVIN4Q5BKX8 364 aa27.7■■■□□ 2.02
VTI1B-201ENST00000216456 R3HDMLQ9H3Y0 253 aa27.7■■■□□ 2.02
VTI1B-201ENST00000216456 ARAP2Q8WZ64 1704 aa27.7■■■□□ 2.02
VTI1B-201ENST00000216456 TCP10L2B9ZVM9 353 aa27.69■■■□□ 2.02
VTI1B-201ENST00000216456 CACNB3P54284 484 aa27.69■■■□□ 2.02
VTI1B-201ENST00000216456 SPRYD7Q5W111 196 aa27.69■■■□□ 2.02
VTI1B-201ENST00000216456 API5Q9BZZ5 524 aaKnown RBP27.69■■■□□ 2.02
VTI1B-201ENST00000216456 PPP2R3BQ9Y5P8 575 aa27.68■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms