RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 TMEM54Q969K7 222 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 MCHR2Q969V1 340 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 TMEM45BQ96B21 275 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 SLAMF6Q96DU3 332 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 ZNF414Q96IQ9 312 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 PGLYRP3Q96LB9 341 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 C4orf45Q96LM5 186 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 OR2M2Q96R28 347 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 RBM24Q9BX46 236 aaKnown RBP3.94□□□□□ -1.78
VPS29-212ENST00000621131 MRPL13Q9BYD1 178 aaKnown RBP3.94□□□□□ -1.78
VPS29-212ENST00000621131 OPA3Q9H6K4 179 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 GNB4Q9HAV0 340 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 PLEKHA1Q9HB21 404 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 POLE4Q9NR33 117 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 CENPMQ9NSP4 180 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 DEPPQ9NTK1 212 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 SLCO1C1Q9NYB5 712 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 COMMD3Q9UBI1 195 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 HHLA2Q9UM44 414 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 NOSIPQ9Y314 301 aaKnown RBP3.94□□□□□ -1.78
VPS29-212ENST00000621131 FLVCR1Q9Y5Y0 555 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 V9GY05 133 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 ATRQ13535 2644 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 EML6Q6ZMW3 1958 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 HCFC1P51610 2035 aa3.94□□□□□ -1.78
VPS29-212ENST00000621131 CACNA1DQ01668 2161 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 KIAA1549Q9HCM3 1950 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 APCP25054 2843 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 LOC100509620A0A075B734 347 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 LOC105371242A0A075B767 164 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 TRBV5-5A0A0J9YX44 114 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 TMEM269A0A1B0GVZ9 245 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 LOC107986453A0A1B0GWG9 222 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 FABP12A6NFH5 140 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 ZNF724A8MTY0 619 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 B4DXG7 233 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 MKRN2OSH3BPM6 223 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 J3QRK9 145 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 RRP8O43159 456 aaKnown RBP3.93□□□□□ -1.78
VPS29-212ENST00000621131 UPK3AO75631 287 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 UPK1BO75841 260 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 GLSO94925 669 aaPredicted RBP3.93□□□□□ -1.78
VPS29-212ENST00000621131 CST2P09228 141 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 ZNF708P17019 499 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 SRMP19623 302 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 GCH1P30793 250 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 RFC3P40938 356 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 LHX2P50458 406 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 TNFSF10P50591 281 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 P2RY4P51582 365 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 SUCLG1P53597 346 aaKnown RBP3.93□□□□□ -1.78
VPS29-212ENST00000621131 UCNP55089 124 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 XGP55808 180 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 H3F3AP84243 136 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 SCN1BQ07699 218 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 SRSF6Q13247 344 aaKnown RBP3.93□□□□□ -1.78
VPS29-212ENST00000621131 RAB35Q15286 201 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 HIST3H3Q16695 136 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 PCK2Q16822 640 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 UBE2NLQ5JXB2 153 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 ZNF684Q5T5D7 378 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 RIPPLY2Q5TAB7 128 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 ATP1A1-AS1Q5TC04 95 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 HACD4Q5VWC8 232 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 TMEM211Q6ICI0 200 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 MZT2BQ6NZ67 158 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 TMEM53Q6P2H8 277 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 UNQ9370/PRO34162Q6UXP9 181 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 TMEM91Q6ZNR0 172 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 DPPA2Q7Z7J5 298 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 LAX1Q8IWV1 398 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 C20orf196Q8IYI0 205 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 ZNF100Q8IYN0 542 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 UBE2J2Q8N2K1 259 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 NKAIN3Q8N8D7 197 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 SAMD12Q8N8I0 201 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 THAP8Q8NA92 274 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 ZFP62Q8NB50 900 aaPredicted RBP3.93□□□□□ -1.78
VPS29-212ENST00000621131 TRMT10AQ8TBZ6 339 aaKnown RBP3.93□□□□□ -1.78
VPS29-212ENST00000621131 RPS4Y2Q8TD47 263 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 RNF133Q8WVZ7 376 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 TMEM106AQ96A25 262 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 SLAMF9Q96A28 289 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 APH1AQ96BI3 265 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 CPNE2Q96FN4 548 aaPredicted RBP3.93□□□□□ -1.78
VPS29-212ENST00000621131 DERL3Q96Q80 235 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 ATF6BQ99941 703 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 PDCD1LG2Q9BQ51 273 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 SRXN1Q9BYN0 137 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 LINC00470Q9BZP3 86 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 HDHD2Q9H0R4 259 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 GHITMQ9H3K2 345 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 RNF122Q9H9V4 155 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 ABCB9Q9NP78 766 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 ABCB10Q9NRK6 738 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 GLRX2Q9NS18 164 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 MRPL22Q9NWU5 206 aaKnown RBP3.93□□□□□ -1.78
VPS29-212ENST00000621131 EXTL2Q9UBQ6 330 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 OR52A1Q9UKL2 312 aa3.93□□□□□ -1.78
VPS29-212ENST00000621131 FOXJ3Q9UPW0 622 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms