RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 OR1N2Q8NGR9 330 aa12.42□□□□□ -0.42
COL4A3-202ENST00000396578 SPPL3Q8TCT6 385 aa12.42□□□□□ -0.42
COL4A3-202ENST00000396578 CST9Q5W186 159 aa12.42□□□□□ -0.42
COL4A3-202ENST00000396578 ZNF707Q96C28 371 aaPredicted RBP12.42□□□□□ -0.42
COL4A3-202ENST00000396578 ZFP30Q9Y2G7 519 aa12.42□□□□□ -0.42
COL4A3-202ENST00000396578 TRBV5-4A0A0C4DH59 114 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 ZNF83P51522 516 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 PSG5Q15238 335 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 PKD1L3Q7Z443 1732 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 STARD10Q9Y365 291 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 SCN4AP35499 1836 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 RTTNQ86VV8 2226 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 GEMIN2O14893 280 aaKnown RBP12.41□□□□□ -0.42
COL4A3-202ENST00000396578 CXorf1O96002 111 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 POLR2GP62487 172 aaKnown RBP eCLIP12.41□□□□□ -0.42
COL4A3-202ENST00000396578 KIF26BQ2KJY2 2108 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 WDR13Q9H1Z4 485 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 TCRBV16S1A1N1A0A5B0 115 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 SRSF10O75494 262 aaKnown RBP12.41□□□□□ -0.42
COL4A3-202ENST00000396578 GFERP55789 205 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 GABRA6Q16445 453 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 MEGF10Q96KG7 1140 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 TMEM140Q9NV12 185 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 VSTM2AQ8TAG5 236 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 FXYD1O00168 92 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 HIST1H1EP10412 219 aaKnown RBP12.41□□□□□ -0.42
COL4A3-202ENST00000396578 FMODQ06828 376 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 CD226Q15762 336 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 SLC25A33Q9BSK2 321 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 ABHD14AQ9BUJ0 271 aa12.41□□□□□ -0.42
COL4A3-202ENST00000396578 OOEPA6NGQ2 149 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 H3BMH7 237 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 RNF224P0DH78 156 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 SELENOPP49908 381 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 ZNF774Q6NX45 483 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 OR4C12Q96R67 309 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 CBLN2Q8IUK8 224 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 C4orf45Q96LM5 186 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 MIEN1Q9BRT3 115 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 MGPP08493 103 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 GVQW1Q8N7I0 195 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 RFESDQ8TAC1 157 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 IFITM10A6NMD0 228 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 CA5BP1Q8WTZ4 195 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 FLYWCH2Q96CP2 140 aaKnown RBP12.4□□□□□ -0.42
COL4A3-202ENST00000396578 ANXA10Q9UJ72 324 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 ZNF880Q6PDB4 577 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 OR4P4Q8NGL7 312 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 GPR61Q9BZJ8 451 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 SNURFLB1AK76 121 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 CCR2P41597 374 aa12.4□□□□□ -0.42
COL4A3-202ENST00000396578 FBLL1A6NHQ2 334 aaKnown RBP12.39□□□□□ -0.43
COL4A3-202ENST00000396578 DIRC3C9JPN6 131 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 CA2P00918 260 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 RAB37Q96AX2 223 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 ABHD1Q96SE0 405 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 TBX15Q96SF7 602 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 MRGPRDQ8TDS7 321 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 GABRG3Q99928 467 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 SHISA8B8ZZ34 492 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 IGLV3-25P01717 112 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 CTSDP07339 412 aaPredicted RBP12.39□□□□□ -0.43
COL4A3-202ENST00000396578 KLF3P57682 345 aaPredicted RBP12.39□□□□□ -0.43
COL4A3-202ENST00000396578 TNFAIP6P98066 277 aaPredicted RBP12.39□□□□□ -0.43
COL4A3-202ENST00000396578 ZNF738Q8NE65 137 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 OR11G2Q8NGC1 345 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 FGF14Q92915 247 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 MS4A4AQ96JQ5 239 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 MYOFQ9NZM1 2061 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 IGHV3-43A0A0B4J1X8 118 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 IGHV3-43DP0DP04 118 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 IER3P46695 156 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 WNT3P56703 355 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 CLPPQ16740 277 aaPredicted RBP12.39□□□□□ -0.43
COL4A3-202ENST00000396578 MRGPRGQ86SM5 289 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 TM4SF19Q96DZ7 209 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 RASL11BQ9BPW5 248 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 SLC26A1Q9H2B4 701 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 M0R296 226 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 SURF2Q15527 256 aaPredicted RBP12.39□□□□□ -0.43
COL4A3-202ENST00000396578 R3HDM4Q96D70 268 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 SIRT5Q9NXA8 310 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 SHISA7A6NL88 538 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 CHST1O43916 411 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 CD1BP29016 333 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 NMUP48645 174 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 TNXAQ16473 311 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 AMMECR1LQ6DCA0 310 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 NUBPLQ8TB37 319 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 CCL17Q92583 94 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 CXXC4Q9H2H0 198 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 COA4Q9NYJ1 87 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 SYNGR2O43760 224 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 ZNF117Q03924 483 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 SMAGPQ0VAQ4 97 aa12.39□□□□□ -0.43
COL4A3-202ENST00000396578 H3BQ15 152 aa12.38□□□□□ -0.43
COL4A3-202ENST00000396578 UBE2V2Q15819 145 aa12.38□□□□□ -0.43
COL4A3-202ENST00000396578 MRPL54Q6P161 138 aaKnown RBP12.38□□□□□ -0.43
COL4A3-202ENST00000396578 CD300LDQ6UXZ3 194 aa12.38□□□□□ -0.43
COL4A3-202ENST00000396578 DNAJB12Q9NXW2 375 aaKnown RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms