RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 GAR1Q9NY12 217 aaKnown RBP4.04□□□□□ -1.76
VPS13C-201ENST00000249837 CACNG5Q9UF02 275 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 CTXN2P0C2S0 81 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 PGA3P0DJD8 388 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 C6orf15Q6UXA7 325 aaPredicted RBP4.04□□□□□ -1.76
VPS13C-201ENST00000249837 GAPTQ8N292 157 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 KCNE4Q8WWG9 221 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 AQP3Q92482 292 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 UBE2ZQ9H832 354 aaPredicted RBP4.04□□□□□ -1.76
VPS13C-201ENST00000249837 CUL9Q8IWT3 2517 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 A8MXK9 166 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 C5orf67F2Z3F1 127 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 MPPED1O15442 326 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 YIF1AO95070 293 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 KRASP01116 189 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 MGST1P10620 155 aaKnown RBP4.04□□□□□ -1.76
VPS13C-201ENST00000249837 IRF2P14316 349 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 UBE2G2P60604 165 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 ZNF705AQ6ZN79 300 aaPredicted RBP4.04□□□□□ -1.76
VPS13C-201ENST00000249837 PTX4Q96A99 478 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 CTHRC1Q96CG8 243 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 ALX4Q9H161 411 aaPredicted RBP4.04□□□□□ -1.76
VPS13C-201ENST00000249837 C2orf16Q68DN1 1984 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 CCL4P13236 92 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 ZNF154Q13106 437 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 SLC25A47Q6Q0C1 308 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 GDF15Q99988 308 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 MPTX1A8MV57 137 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 PRF1P14222 555 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 ZNF92Q03936 586 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 TGIF1Q15583 401 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 PLPPR5Q32ZL2 321 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 VAX1Q5SQQ9 334 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 FDX2Q6P4F2 183 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 SLC39A7Q92504 469 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 NTNG2Q96CW9 530 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 OR6C6A6NF89 314 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 CBR3O75828 277 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 MPGP29372 298 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 LSM6P62312 80 aaKnown RBP4.04□□□□□ -1.76
VPS13C-201ENST00000249837 C1QL2Q7Z5L3 287 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 OR10D3Q8NH80 312 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 CLDN23Q96B33 292 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 SLC25A22Q9H936 323 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 GPR132Q9UNW8 380 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 TMED3Q9Y3Q3 217 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 MT-CO2P00403 227 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 NTF3P20783 257 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 EGR4Q05215 589 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 FAM185AQ8N0U4 392 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 SLC25A45Q8N413 288 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 ZNF385AQ96PM9 386 aaKnown RBP4.04□□□□□ -1.76
VPS13C-201ENST00000249837 RASL10BQ96S79 203 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 SORL1Q92673 2214 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 A0A1W2PPQ1 181 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 ZNF320A2RRD8 509 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 ACTL6BO94805 426 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 CER1O95813 267 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 CCL3P10147 92 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 FHITP49789 147 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 NCR3LG1Q68D85 454 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 RTN4RL2Q86UN3 420 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 SPEM1Q8N4L4 309 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 DMBX1Q8NFW5 382 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 SEC11CQ9BY50 192 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 RTN4RQ9BZR6 473 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 GPR27Q9NS67 375 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 SLC25A6P12236 298 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 EDDM3BP56851 147 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 ZP4Q12836 540 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 C3AR1Q16581 482 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 IZUMO4Q1ZYL8 232 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 TEX30Q5JUR7 227 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 KCNIP4Q6PIL6 250 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 MYPOPQ86VE0 399 aaPredicted RBP4.04□□□□□ -1.76
VPS13C-201ENST00000249837 TMPRSS5Q9H3S3 457 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 NACAE9PAV3 2078 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 FFAR4Q5NUL3 377 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 ZNF468Q5VIY5 522 aaPredicted RBP4.04□□□□□ -1.76
VPS13C-201ENST00000249837 SLC25A28Q96A46 364 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 APOBEC3DQ96AK3 386 aaPredicted RBP4.04□□□□□ -1.76
VPS13C-201ENST00000249837 STARD10Q9Y365 291 aa4.04□□□□□ -1.76
VPS13C-201ENST00000249837 PPYP01298 95 aa4.03□□□□□ -1.76
VPS13C-201ENST00000249837 CA6P23280 308 aa4.03□□□□□ -1.76
VPS13C-201ENST00000249837 SSTP61278 116 aa4.03□□□□□ -1.76
VPS13C-201ENST00000249837 RAB39BQ96DA2 213 aa4.03□□□□□ -1.76
VPS13C-201ENST00000249837 CLEC1BQ9P126 229 aa4.03□□□□□ -1.76
VPS13C-201ENST00000249837 C3orf85A0A1B0GTC6 90 aa4.03□□□□□ -1.76
VPS13C-201ENST00000249837 MFNGO00587 321 aa4.03□□□□□ -1.76
VPS13C-201ENST00000249837 MMP9P14780 707 aa4.03□□□□□ -1.76
VPS13C-201ENST00000249837 ARR3P36575 388 aa4.03□□□□□ -1.76
VPS13C-201ENST00000249837 CD200P41217 278 aa4.03□□□□□ -1.76
VPS13C-201ENST00000249837 PLAC9Q5JTB6 97 aa4.03□□□□□ -1.76
VPS13C-201ENST00000249837 LY6G6FQ5SQ64 297 aa4.03□□□□□ -1.76
VPS13C-201ENST00000249837 C15orf54Q8N8G6 183 aa4.03□□□□□ -1.76
VPS13C-201ENST00000249837 ZNF488Q96MN9 340 aa4.03□□□□□ -1.76
VPS13C-201ENST00000249837 C2CD3Q4AC94 2353 aa4.03□□□□□ -1.76
VPS13C-201ENST00000249837 XKRY2A2RUG3 117 aa4.03□□□□□ -1.76
VPS13C-201ENST00000249837 PPP5D1E7EU14 171 aa4.03□□□□□ -1.76
VPS13C-201ENST00000249837 RAMP1O60894 148 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms