RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 TOLLIPQ9H0E2 274 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 RNF24Q9Y225 148 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 A0A0J9YW62 118 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 SMCO3A2RU48 225 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 TMEM127O75204 238 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 ZFAND5O76080 213 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 AADACP22760 399 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 FPR2P25090 351 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 IDH3GP51553 393 aaPredicted RBP7.52□□□□□ -1.21
USP40-203ENST00000427112 DCAF7P61962 342 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 VAMP2P63027 116 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 DCDP81605 110 aaKnown RBP7.52□□□□□ -1.21
USP40-203ENST00000427112 ZNF345Q14585 488 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 RHEBQ15382 184 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 ACER2Q5QJU3 275 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 LPCAT3Q6P1A2 487 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 TMPRSS7Q7RTY8 843 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 ZNF383Q8NA42 475 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 OR2G3Q8NGZ4 309 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 SHDQ96IW2 340 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 TP53RKQ96S44 253 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 SRXN1Q9BYN0 137 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 KCNIP3Q9Y2W7 256 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 SPTBN1Q01082 2364 aaKnown RBP7.52□□□□□ -1.21
USP40-203ENST00000427112 KALRNO60229 2985 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 MED12LQ86YW9 2145 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 IGKV1-12A0A0C4DH73 117 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 COLCA2A8K830 154 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 TLX3O43711 291 aaPredicted RBP7.52□□□□□ -1.21
USP40-203ENST00000427112 IGKV1D-12P01611 117 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 S100A8P05109 93 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 CD37P11049 281 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 HNF1AP20823 631 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 RPL29P47914 159 aaKnown RBP7.52□□□□□ -1.21
USP40-203ENST00000427112 ELLP55199 621 aaPredicted RBP7.52□□□□□ -1.21
USP40-203ENST00000427112 TAS2R31P59538 309 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 CYCSP99999 105 aaKnown RBP7.52□□□□□ -1.21
USP40-203ENST00000427112 ZNF154Q13106 437 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 RNF212Q495C1 297 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 SLC35G3Q8N808 338 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 SLC30A7Q8NEW0 376 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 FAM131CQ96AQ9 280 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 HES7Q9BYE0 225 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 C8orf33Q9H7E9 229 aaPredicted RBP7.52□□□□□ -1.21
USP40-203ENST00000427112 C1orf123Q9NWV4 160 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 TACC2O95359 2948 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 LILRA5A6NI73 299 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 ST8SIA5O15466 376 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 TGOLN2O43493 480 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 ISG15P05161 165 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 CHRM2P08172 466 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 MELTFP08582 738 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 CD79AP11912 226 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 MSR1P21757 451 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 GNG10P50151 68 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 GPM6AP51674 278 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 CCR5P51681 352 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 RSPO1Q2MKA7 263 aaPredicted RBP7.52□□□□□ -1.21
USP40-203ENST00000427112 CEACAM16Q2WEN9 425 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 GPR157Q5UAW9 335 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 DOK3Q7L591 496 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 MRPL41Q8IXM3 137 aaKnown RBP7.52□□□□□ -1.21
USP40-203ENST00000427112 ADAMTS17Q8TE56 1095 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 RNF150Q9ULK6 438 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 MEMO1Q9Y316 297 aa7.52□□□□□ -1.21
USP40-203ENST00000427112 FAM166BA8MTA8 275 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 PPP1R2P9O14990 202 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 KLK3P07288 261 aaPredicted RBP7.51□□□□□ -1.21
USP40-203ENST00000427112 MMP7P09237 267 aaPredicted RBP7.51□□□□□ -1.21
USP40-203ENST00000427112 SCTP09683 121 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 GSK3AP49840 483 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 NXPH1P58417 271 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 ZNF92Q03936 586 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 S100A7AQ86SG5 101 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 CXorf67Q86X51 503 aaPredicted RBP7.51□□□□□ -1.21
USP40-203ENST00000427112 OR2M3Q8NG83 312 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 OR10AD1Q8NGE0 317 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 ELOVL1Q9BW60 279 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 MRPL13Q9BYD1 178 aaKnown RBP7.51□□□□□ -1.21
USP40-203ENST00000427112 NMES1Q9C002 83 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 TMPRSS5Q9H3S3 457 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 C12orf49Q9H741 205 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 SLC2A9Q9NRM0 540 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 ANXA10Q9UJ72 324 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 OSGIN2Q9Y236 505 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 ACACAQ13085 2346 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 ADAMTS9Q9P2N4 1935 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 ARGFXA6NJG6 315 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 AQP7O14520 342 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 DHHO43323 396 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 ADAM20O43506 726 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 PDGFBP01127 241 aaPredicted RBP7.51□□□□□ -1.21
USP40-203ENST00000427112 FABP4P15090 132 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 RAB5CP51148 216 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 TGIF2LXQ8IUE1 241 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 D2HGDHQ8N465 521 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 DTWD2Q8NBA8 298 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 EMG1Q92979 244 aaKnown RBP7.51□□□□□ -1.21
USP40-203ENST00000427112 SPACA9Q96E40 222 aaPredicted RBP7.51□□□□□ -1.21
USP40-203ENST00000427112 PNRC2Q9NPJ4 139 aaKnown RBP7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms