RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 NRIP2Q9BQI9 281 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 MRPL37Q9BZE1 423 aaKnown RBP3.57□□□□□ -1.84
USH2A-202ENST00000366942 NXT2Q9NPJ8 142 aaKnown RBP3.57□□□□□ -1.84
USH2A-202ENST00000366942 MINOS1-NBL1R4GNA1 71 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 E9PCH4 1651 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 ASCC3Q8N3C0 2202 aaKnown RBP3.57□□□□□ -1.84
USH2A-202ENST00000366942 NALCNQ8IZF0 1738 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 C22orf46C9J442 243 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 M0R036 132 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 FAM189A1O60320 539 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 GGCTO75223 188 aaKnown RBP3.57□□□□□ -1.84
USH2A-202ENST00000366942 TSPAN15O95858 294 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 AMY2AP04746 511 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 MRPS25P82663 173 aaKnown RBP3.57□□□□□ -1.84
USH2A-202ENST00000366942 TSPAN31Q12999 210 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 IRF3Q14653 427 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 SYPL1Q16563 259 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 LGALSLQ3ZCW2 172 aaPredicted RBP3.57□□□□□ -1.84
USH2A-202ENST00000366942 ZNF678Q5SXM1 525 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 WDR25Q64LD2 544 aaPredicted RBP3.57□□□□□ -1.84
USH2A-202ENST00000366942 KLHDC1Q8N7A1 406 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 OR10Z1Q8NGY1 313 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 ITLN1Q8WWA0 313 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 RAB24Q969Q5 203 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 SIRT7Q9NRC8 400 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 MRM2Q9UI43 246 aaKnown RBP3.57□□□□□ -1.84
USH2A-202ENST00000366942 ZDHHC2Q9UIJ5 367 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 FZR1Q9UM11 496 aa3.57□□□□□ -1.84
USH2A-202ENST00000366942 EXOGQ9Y2C4 368 aaKnown RBP3.57□□□□□ -1.84
USH2A-202ENST00000366942 TRAV18A0A075B6X5 111 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 ATP1B1P05026 303 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 PLA2G2AP14555 144 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 CTGFP29279 349 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 HTR6P50406 440 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 MMP16P51512 607 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 ZNF415Q09FC8 603 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 FAM71E1Q6IPT2 247 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 Q6ZSR9 355 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 RNF144BQ7Z419 303 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 POU5F2Q8N7G0 328 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 C11orf44Q8N8P7 122 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 RAB40CQ96S21 281 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 FOXC2Q99958 501 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 PAXXQ9BUH6 204 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 OR51J1Q9H342 316 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 PURGQ9UJV8 347 aaKnown RBP3.56□□□□□ -1.84
USH2A-202ENST00000366942 COA3Q9Y2R0 106 aaPredicted RBP3.56□□□□□ -1.84
USH2A-202ENST00000366942 SCN4AP35499 1836 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 A0A0A6YYH2 397 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 IGHV3-15A0A0B4J1V0 119 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 TRAV5A0A0B4J249 113 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 TCRBV5S2A0A599 114 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 A6NJ64 397 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 CCL3P10147 92 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 CELP19835 753 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 LSM6P62312 80 aaKnown RBP3.56□□□□□ -1.84
USH2A-202ENST00000366942 TEX30Q5JUR7 227 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 COX15Q7KZN9 410 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 SSX9Q7RTT3 188 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 PNKDQ8N490 385 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 TMEM167AQ8TBQ9 72 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 CIDECQ96AQ7 238 aaPredicted RBP3.56□□□□□ -1.84
USH2A-202ENST00000366942 TEAD3Q99594 435 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 TXNDC17Q9BRA2 123 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 MAP1LC3CQ9BXW4 147 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 PARD6AQ9NPB6 346 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 SLC17A5Q9NRA2 495 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 FAM206AQ9NX38 181 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 ICAM5Q9UMF0 924 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 TFR2Q9UP52 801 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 TSSC4Q9Y5U2 329 aaPredicted RBP3.56□□□□□ -1.84
USH2A-202ENST00000366942 TCRBV16S1A1N1A0A5B0 115 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 CLPSL1A2RUU4 121 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 ZNF729A6NN14 1252 aaPredicted RBP3.56□□□□□ -1.84
USH2A-202ENST00000366942 PRSS1P07477 247 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 RPS26P62854 115 aaKnown RBP3.56□□□□□ -1.84
USH2A-202ENST00000366942 LSAMPQ13449 338 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 CST9LP1Q5W188 147 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 OSR2Q8N2R0 312 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 GALNT14Q96FL9 552 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 DUX3Q96PT4 197 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 ABHD1Q96SE0 405 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 SPATA25Q9BR10 227 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 MRPL15Q9P015 296 aaKnown RBP3.56□□□□□ -1.84
USH2A-202ENST00000366942 PKDREJQ9NTG1 2253 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 DICER1Q9UPY3 1922 aaKnown RBP3.56□□□□□ -1.84
USH2A-202ENST00000366942 C17orf51A8MQB3 221 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 APOMO95445 188 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 LALBAP00709 142 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 CD48P09326 243 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 Q499Y3 187 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 CD200R1LQ6Q8B3 271 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 AMIGO2Q86SJ2 522 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 LINC00596Q86U02 117 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 TTC9CQ8N5M4 171 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 OR1M1Q8NGA1 313 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 OR52I2Q8NH67 350 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 BTBD10Q9BSF8 475 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 GPR35Q9HC97 309 aa3.56□□□□□ -1.84
USH2A-202ENST00000366942 NAP1L6A6NFF2 107 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms