RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ZNF322Q6U7Q0 402 aaPredicted RBP6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 C8orf86Q6ZUL3 223 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 SLC25A26Q70HW3 274 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 TRAPPC6BQ86SZ2 158 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 MRPL41Q8IXM3 137 aaKnown RBP6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 ZNF679Q8IYX0 411 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 ADGRG5Q8IZF4 528 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 OR8H2Q8N162 312 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 CANT1Q8WVQ1 401 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 TFAP2CQ92754 450 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 EMG1Q92979 244 aaKnown RBP6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 STMN2Q93045 179 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 RCC1LQ96I51 464 aaKnown RBP6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 CEP19Q96LK0 163 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 ASCL2Q99929 193 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 CLEC7AQ9BXN2 247 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 YIPF3Q9GZM5 350 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 MRM2Q9UI43 246 aaKnown RBP6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 OR52A1Q9UKL2 312 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 POLDIP2Q9Y2S7 368 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 PCDHGB5Q9Y5G0 923 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 SESN1Q9Y6P5 492 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 V9GYS6 101 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 PLECQ15149 4684 aaKnown RBP6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 DLGAP1O14490 977 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 GNGT2O14610 69 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 E2F6O75461 281 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 ALDOBP05062 364 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 HMGN1P05114 100 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 RAP2AP10114 183 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 ATP6V1B1P15313 513 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 CDK2P24941 298 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 HTR1DP28221 377 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 OR3A1P47881 315 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 POU3F4P49335 361 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 DYNLT3P51808 116 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 ROM1Q03395 351 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 EGFEM1PQ0D2K5 195 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 IL24Q13007 206 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 TRIM25Q14258 630 aaKnown RBP6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 RBM39Q14498 530 aaKnown RBP6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 ZNF829Q3KNS6 432 aaPredicted RBP6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 MINOS1Q5TGZ0 78 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 LCNL1Q6ZST4 164 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 EGFL6Q8IUX8 553 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 SLC35F2Q8IXU6 374 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 ELMOD2Q8IZ81 293 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 RDH10Q8IZV5 341 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 ABHD12Q8N2K0 398 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 DTX3Q8N9I9 347 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 OR4X2Q8NGF9 303 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 LEAP2Q969E1 77 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 RFT1Q96AA3 541 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 SNX22Q96L94 193 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 CNN2Q99439 309 aaKnown RBP6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 B9D2Q9BPU9 175 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 ZNF286AQ9HBT8 521 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 R4GMQ9 66 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 MINOS1-NBL1R4GNA1 71 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 HECTD4Q9Y4D8 3996 aa6.86□□□□□ -1.31
SHKBP1-220ENST00000599716 hADV38S2A0JD32 116 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 ACOD1A6NK06 481 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 MITFO75030 526 aaPredicted RBP6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 DNAJC8O75937 253 aaPredicted RBP6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 RBP4P02753 201 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 PRKACAP17612 351 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 EPHA2P29317 976 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 OR3A4PP47883 348 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 GLIPR1P48060 266 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 RAB25P57735 213 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 ZNF91Q05481 1191 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 MEF2CQ06413 473 aaPredicted RBP6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 AESQ08117 197 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 DIAPH2-AS1Q14236 149 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 DEGS2Q6QHC5 323 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 CAPSLQ8WWF8 208 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 SPACA5Q96QH8 159 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 PRR25Q96S07 402 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 PKIBQ9C010 78 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 ZNF556Q9HAH1 456 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 LIN7BQ9HAP6 207 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 ADGRL4Q9HBW9 690 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 SLC25A19Q9HC21 320 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 DPM3Q9P2X0 92 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 LINC00312Q9Y6C7 94 aa6.85□□□□□ -1.31
SHKBP1-220ENST00000599716 PSMB11A5LHX3 300 aa6.84□□□□□ -1.31
SHKBP1-220ENST00000599716 ARRDC5A6NEK1 342 aa6.84□□□□□ -1.31
SHKBP1-220ENST00000599716 LINC01548A6NM66 108 aa6.84□□□□□ -1.31
SHKBP1-220ENST00000599716 NUDT19A8MXV4 375 aa6.84□□□□□ -1.31
SHKBP1-220ENST00000599716 ZNF254O75437 659 aa6.84□□□□□ -1.31
SHKBP1-220ENST00000599716 OR2F2O95006 317 aa6.84□□□□□ -1.31
SHKBP1-220ENST00000599716 AZGP1P25311 298 aaKnown RBP6.84□□□□□ -1.31
SHKBP1-220ENST00000599716 PEX2P28328 305 aa6.84□□□□□ -1.31
SHKBP1-220ENST00000599716 THBS3P49746 956 aa6.84□□□□□ -1.31
SHKBP1-220ENST00000599716 DAPP51397 102 aa6.84□□□□□ -1.31
SHKBP1-220ENST00000599716 LUMP51884 338 aaPredicted RBP6.84□□□□□ -1.31
SHKBP1-220ENST00000599716 P2RX3P56373 397 aa6.84□□□□□ -1.31
SHKBP1-220ENST00000599716 GNGT1P63211 74 aa6.84□□□□□ -1.31
SHKBP1-220ENST00000599716 SCN1BQ07699 218 aa6.84□□□□□ -1.31
SHKBP1-220ENST00000599716 HNF4GQ14541 408 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms