RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 FCAMRQ8WWV6 532 aa11.58□□□□□ -0.56
VAPB-202ENST00000395802 AUNIPQ9H7T9 357 aa11.58□□□□□ -0.56
VAPB-202ENST00000395802 SCPEP1Q9HB40 452 aa11.58□□□□□ -0.56
VAPB-202ENST00000395802 GCM1Q9NP62 436 aa11.58□□□□□ -0.56
VAPB-202ENST00000395802 PLEKHJ1Q9NW61 149 aa11.58□□□□□ -0.56
VAPB-202ENST00000395802 HSF4Q9ULV5 492 aa11.58□□□□□ -0.56
VAPB-202ENST00000395802 LINC00854A0A1B0GVQ3 168 aa11.57□□□□□ -0.56
VAPB-202ENST00000395802 FAM221AA4D161 298 aa11.57□□□□□ -0.56
VAPB-202ENST00000395802 GABARAPH6UMI1 98 aa11.57□□□□□ -0.56
VAPB-202ENST00000395802 OR7C1O76099 320 aaPredicted RBP11.57□□□□□ -0.56
VAPB-202ENST00000395802 PRSS3P35030 304 aa11.57□□□□□ -0.56
VAPB-202ENST00000395802 CCL8P80075 99 aa11.57□□□□□ -0.56
VAPB-202ENST00000395802 TLE4Q04727 773 aa11.57□□□□□ -0.56
VAPB-202ENST00000395802 TAF9Q16594 264 aa11.57□□□□□ -0.56
VAPB-202ENST00000395802 PNLIPRP3Q17RR3 467 aa11.57□□□□□ -0.56
VAPB-202ENST00000395802 C20orf204Q6ZNR8 217 aa11.57□□□□□ -0.56
VAPB-202ENST00000395802 DTX2Q86UW9 622 aa11.57□□□□□ -0.56
VAPB-202ENST00000395802 MOGAT3Q86VF5 341 aa11.57□□□□□ -0.56
VAPB-202ENST00000395802 LRRC29Q8WV35 223 aa11.57□□□□□ -0.56
VAPB-202ENST00000395802 GTF3AQ92664 365 aaKnown RBP11.57□□□□□ -0.56
VAPB-202ENST00000395802 GCDHQ92947 438 aaPredicted RBP11.57□□□□□ -0.56
VAPB-202ENST00000395802 RNF7Q9UBF6 113 aa11.57□□□□□ -0.56
VAPB-202ENST00000395802 PLEKHA6Q9Y2H5 1048 aa11.57□□□□□ -0.56
VAPB-202ENST00000395802 SPTAN1Q13813 2472 aaKnown RBP11.56□□□□□ -0.56
VAPB-202ENST00000395802 GEMIN2O14893 280 aaKnown RBP11.56□□□□□ -0.56
VAPB-202ENST00000395802 CD3GP09693 182 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 FUT3P21217 361 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 MRPS15P82914 257 aaKnown RBP11.56□□□□□ -0.56
VAPB-202ENST00000395802 SSBP1Q04837 148 aaKnown RBP11.56□□□□□ -0.56
VAPB-202ENST00000395802 ZNF146Q15072 292 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 SP5Q6BEB4 398 aaPredicted RBP11.56□□□□□ -0.56
VAPB-202ENST00000395802 CCBE1Q6UXH8 406 aaPredicted RBP11.56□□□□□ -0.56
VAPB-202ENST00000395802 DNM1P46Q6ZS02 220 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 VRK1Q99986 396 aaPredicted RBP11.56□□□□□ -0.56
VAPB-202ENST00000395802 NICN1Q9BSH3 213 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 IFT22Q9H7X7 185 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 HES4Q9HCC6 221 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.56□□□□□ -0.567e-11■■■■■ 38.1
VAPB-202ENST00000395802 LRRK2Q5S007 2527 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 IGHV3-64DA0A0J9YX35 117 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 SRRM5B3KS81 715 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 SH2D1BO14796 132 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 LYRM1O43325 122 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 GLAP06280 429 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 MELTFP08582 738 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 DANCRP0C864 163 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 HIST1H1DP16402 221 aaKnown RBP11.56□□□□□ -0.56
VAPB-202ENST00000395802 PMELP40967 661 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 RBM39Q14498 530 aaKnown RBP11.56□□□□□ -0.56
VAPB-202ENST00000395802 PIGYQ3MUY2 71 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 CDNFQ49AH0 187 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 NEU4Q8WWR8 484 aaPredicted RBP11.56□□□□□ -0.56
VAPB-202ENST00000395802 CLEC4MQ9H2X3 399 aaPredicted RBP11.56□□□□□ -0.56
VAPB-202ENST00000395802 UBTD1Q9HAC8 227 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 TAS2R8Q9NYW2 309 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 DNAJB11Q9UBS4 358 aa11.56□□□□□ -0.56
VAPB-202ENST00000395802 RBMX2Q9Y388 322 aaKnown RBP11.56□□□□□ -0.56
VAPB-202ENST00000395802 COL12A1Q99715 3063 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 SOCS1O15524 211 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 PDCD6O75340 191 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 CA11O75493 328 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 ECDO95905 644 aaPredicted RBP11.55□□□□□ -0.56
VAPB-202ENST00000395802 KNG1P01042 644 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 LPLP06858 475 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 GSTT2BP0CG30 244 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 PTHLHP12272 177 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 GNG2P59768 71 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 AP3S2P59780 193 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 ACTBP60709 375 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 ACTG1P63261 375 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 IKZF1Q13422 519 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 HFEQ30201 348 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 MOGAT2Q3SYC2 334 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 ZNF260Q3ZCT1 412 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 RNASE12Q5GAN4 147 aaKnown RBP11.55□□□□□ -0.56
VAPB-202ENST00000395802 ZNF57Q68EA5 555 aaPredicted RBP11.55□□□□□ -0.56
VAPB-202ENST00000395802 ACP7Q6ZNF0 438 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 ZNF826PQ6ZT77 177 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 OR52I2Q8NH67 350 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 DEDD2Q8WXF8 326 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 LAMP3Q9UQV4 416 aa11.55□□□□□ -0.56
VAPB-202ENST00000395802 MEIOCA2RUB1 952 aa11.54□□□□□ -0.56
VAPB-202ENST00000395802 DEGS1O15121 323 aa11.54□□□□□ -0.56
VAPB-202ENST00000395802 RBBP9O75884 186 aa11.54□□□□□ -0.56
VAPB-202ENST00000395802 LHBP01229 141 aa11.54□□□□□ -0.56
VAPB-202ENST00000395802 GNB3P16520 340 aa11.54□□□□□ -0.56
VAPB-202ENST00000395802 CBX5P45973 191 aa11.54□□□□□ -0.56
VAPB-202ENST00000395802 MRPS11P82912 194 aaKnown RBP11.54□□□□□ -0.56
VAPB-202ENST00000395802 ARFRP1Q13795 201 aa11.54□□□□□ -0.56
VAPB-202ENST00000395802 MICBQ29980 383 aa11.54□□□□□ -0.56
VAPB-202ENST00000395802 NKAPLQ5M9Q1 402 aa11.54□□□□□ -0.56
VAPB-202ENST00000395802 ATAD3CQ5T2N8 411 aa11.54□□□□□ -0.56
VAPB-202ENST00000395802 ARHGAP5-AS1Q96IT6 56 aa11.54□□□□□ -0.56
VAPB-202ENST00000395802 ZNF488Q96MN9 340 aa11.54□□□□□ -0.56
VAPB-202ENST00000395802 TRAF4Q9BUZ4 470 aaPredicted RBP11.54□□□□□ -0.56
VAPB-202ENST00000395802 SEBOXQ9HB31 216 aaPredicted RBP11.54□□□□□ -0.56
VAPB-202ENST00000395802 DLL4Q9NR61 685 aa11.54□□□□□ -0.56
VAPB-202ENST00000395802 PKDREJQ9NTG1 2253 aa11.54□□□□□ -0.56
VAPB-202ENST00000395802 A0A0A6YYD4 124 aa11.53□□□□□ -0.56
VAPB-202ENST00000395802 IGHV1-69-2A0A0G2JMI3 117 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms