RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ZNF676Q8N7Q3 588 aa6.9□□□□□ -1.3
SHKBP1-220ENST00000599716 OR11H6Q8NGC7 330 aa6.9□□□□□ -1.3
SHKBP1-220ENST00000599716 OR52N4Q8NGI2 321 aa6.9□□□□□ -1.3
SHKBP1-220ENST00000599716 OR13D1Q8NGV5 346 aa6.9□□□□□ -1.3
SHKBP1-220ENST00000599716 GIPC3Q8TF64 312 aa6.9□□□□□ -1.3
SHKBP1-220ENST00000599716 MALSU1Q96EH3 234 aa6.9□□□□□ -1.3
SHKBP1-220ENST00000599716 CADM1Q9BY67 442 aaKnown RBP6.9□□□□□ -1.3
SHKBP1-220ENST00000599716 HES4Q9HCC6 221 aa6.9□□□□□ -1.3
SHKBP1-220ENST00000599716 RASL12Q9NYN1 266 aa6.9□□□□□ -1.3
SHKBP1-220ENST00000599716 ACTR3BQ9P1U1 418 aa6.9□□□□□ -1.3
SHKBP1-220ENST00000599716 ENPP5Q9UJA9 477 aa6.9□□□□□ -1.3
SHKBP1-220ENST00000599716 IKZF2Q9UKS7 526 aa6.9□□□□□ -1.3
SHKBP1-220ENST00000599716 TBL2Q9Y4P3 447 aaKnown RBP6.9□□□□□ -1.3
SHKBP1-220ENST00000599716 UBR4Q5T4S7 5183 aa6.9□□□□□ -1.31
SHKBP1-220ENST00000599716 IGHV2-26A0A0B4J1V2 119 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 A0A1B0GTI1 187 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 hCG_1809904A0A1W2PP81 198 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 A0A1W2PPE2 198 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 A0A1W2PR64 198 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 A0A1W2PRV1 198 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 SRSF10O75494 262 aaKnown RBP6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 DHRS3O75911 302 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 AMY1AP04745 511 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 AMY2AP04746 511 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 CHRM2P08172 466 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 GDNFP39905 211 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 ERVK11-1P61568 191 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 SLC35A2P78381 396 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 CBX1P83916 185 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 CLVS2Q5SYC1 327 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 C16orf89Q6UX73 402 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 ETV3LQ6ZN32 361 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 GDPD3Q7L5L3 318 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 ZNF329Q86UD4 541 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 OR14K1Q8NGZ2 314 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 CCDC124Q96CT7 223 aaKnown RBP6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 FOXRED1Q96CU9 486 aaPredicted RBP6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 ZNF714Q96N38 554 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 DUX3Q96PT4 197 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 ZNF649Q9BS31 505 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 ING3Q9NXR8 418 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 GAR1Q9NY12 217 aaKnown RBP6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 TVP23BQ9NYZ1 205 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 MTCH1Q9NZJ7 389 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 NUFIP1Q9UHK0 495 aaKnown RBP6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 LINC00527Q9UJ94 153 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 PITPNC1Q9UKF7 332 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 HERC1Q15751 4861 aa6.89□□□□□ -1.31
SHKBP1-220ENST00000599716 FAM90A22PA8MWA6 464 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 LOC110117498-PIK3R3F6TDL0 507 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 PRODHO43272 600 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 PSPNO60542 156 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 NOS1APO75052 506 aaPredicted RBP6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 RPP14O95059 124 aaKnown RBP6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 APOL3O95236 402 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 CST1P01037 141 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 GABRR1P24046 479 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 NPBWR2P48146 333 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 RIDAP52758 137 aaKnown RBP6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 CDK5Q00535 292 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 UBE2V2Q15819 145 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 FAM98BQ52LJ0 330 aaKnown RBP6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 TMEM42Q69YG0 159 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 CD300LDQ6UXZ3 194 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 KRT74Q7RTS7 529 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 SSX6Q7RTT6 188 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 RNF144BQ7Z419 303 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 DHFR2Q86XF0 187 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 ZNF573Q86YE8 665 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 LINC00482Q8N8I6 264 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 OR4P4Q8NGL7 312 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 NOL4LQ96MY1 436 aaPredicted RBP6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 TBX5Q99593 518 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 SLC25A33Q9BSK2 321 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 CHID1Q9BWS9 393 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 MROQ9BYG7 248 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 TMEM133Q9H2Q1 129 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 MAGIXQ9H6Y5 334 aa6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 RBFOX1Q9NWB1 397 aaKnown RBP6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 TSSC4Q9Y5U2 329 aaPredicted RBP6.88□□□□□ -1.31
SHKBP1-220ENST00000599716 RBMY1BA6NDE4 496 aaKnown RBP6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 RBMY1EA6NEQ0 496 aaKnown RBP6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 B2RBV5 119 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 SIRPB1O00241 398 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 PRKYO43930 277 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 HAND1O96004 215 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 IGHV3-7P01780 117 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 SNRNP70P08621 437 aaKnown RBP6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 RBMY1DP0C7P1 496 aaKnown RBP6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 OSMP13725 252 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 BCL3P20749 454 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 MPZP25189 248 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 CXCR4P61073 352 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 GRK1Q15835 563 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 SNAPC1Q16533 368 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 HSP90B2PQ58FF3 399 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 SLC35D3Q5M8T2 416 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 CASC10Q5T4H9 136 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 BCL2L15Q5TBC7 163 aa6.87□□□□□ -1.31
SHKBP1-220ENST00000599716 KCTD18Q6PI47 426 aaPredicted RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 109.5 ms