RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 MYO7BQ6PIF6 2116 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 USP34Q70CQ2 3546 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 IGKV1-12A0A0C4DH73 117 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 A0A1W2PNU3 283 aaPredicted RBP12.85□□□□□ -0.35
NUP54-217ENST00000514987 TEX46H3BTG2 121 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 CDX4O14627 284 aaPredicted RBP12.85□□□□□ -0.35
NUP54-217ENST00000514987 GEMIN2O14893 280 aaKnown RBP12.85□□□□□ -0.35
NUP54-217ENST00000514987 NME2P1O60361 137 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 CST4P01036 141 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 IGKV1D-12P01611 117 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 NME2P22392 152 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 MAGEA5P43359 124 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 PLP2Q04941 152 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 SMCO1Q147U7 214 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 SRSF7Q16629 238 aaKnown RBP eCLIP12.85□□□□□ -0.35
NUP54-217ENST00000514987 EIF5AL1Q6IS14 154 aaKnown RBP12.85□□□□□ -0.35
NUP54-217ENST00000514987 MRPL21Q7Z2W9 205 aaKnown RBP12.85□□□□□ -0.35
NUP54-217ENST00000514987 MCEMP1Q8IX19 187 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 TUSC5Q8IXB3 177 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 FNDC9Q8TBE3 224 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 OR10C1Q96KK4 312 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 DMRTA2Q96SC8 542 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 HDHD3Q9BSH5 251 aaPredicted RBP12.85□□□□□ -0.35
NUP54-217ENST00000514987 SLC6A15Q9H2J7 730 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 CALHM2Q9HA72 323 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 ACKR4Q9NPB9 350 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 C12orf4Q9NQ89 552 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 ZFP57Q9NU63 452 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 TAS2R3Q9NYW6 316 aa12.85□□□□□ -0.35
NUP54-217ENST00000514987 PQLC2LA1A4F0 135 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 RAB19A4D1S5 217 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 FAM166BA8MTA8 275 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 H0YIZ8 118 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 FGF16O43320 207 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 HOXB5P09067 269 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 CELA3AP09093 270 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 CD46P15529 392 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 GLP1RP43220 463 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 TUSC1Q2TAM9 212 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 PIGYQ3MUY2 71 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 ABCA11PQ4W5N1 156 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 ELP2Q6IA86 826 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 LINC00696Q6ZRV3 163 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 Q6ZS49 121 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 TMEM200AQ86VY9 491 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 MDS2Q8NDY4 140 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 RNF141Q8WVD5 230 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 GALNT14Q96FL9 552 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 SYT3Q9BQG1 590 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 SUCNR1Q9BXA5 334 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 BARX1Q9HBU1 254 aaPredicted RBP12.84□□□□□ -0.35
NUP54-217ENST00000514987 FAM86C1Q9NVL1 165 aa12.84□□□□□ -0.35
NUP54-217ENST00000514987 BET1O15155 118 aa12.83□□□□□ -0.36
NUP54-217ENST00000514987 IGHV3-9P01782 118 aa12.83□□□□□ -0.36
NUP54-217ENST00000514987 HOXD4P09016 255 aaPredicted RBP12.83□□□□□ -0.36
NUP54-217ENST00000514987 RBM39Q14498 530 aaKnown RBP12.83□□□□□ -0.36
NUP54-217ENST00000514987 SLC10A1Q14973 349 aa12.83□□□□□ -0.36
NUP54-217ENST00000514987 FAM74A1Q5RGS3 127 aa12.83□□□□□ -0.36
NUP54-217ENST00000514987 SLC38A6Q8IZM9 456 aa12.83□□□□□ -0.36
NUP54-217ENST00000514987 ZNF611Q8N823 705 aa12.83□□□□□ -0.36
NUP54-217ENST00000514987 CCDC71LQ8N9Z2 235 aa12.83□□□□□ -0.36
NUP54-217ENST00000514987 MARC2Q969Z3 335 aa12.83□□□□□ -0.36
NUP54-217ENST00000514987 GP6Q9HCN6 339 aa12.83□□□□□ -0.36
NUP54-217ENST00000514987 PLSCR2Q9NRY7 297 aa12.83□□□□□ -0.36
NUP54-217ENST00000514987 TMEM100Q9NV29 134 aa12.83□□□□□ -0.36
NUP54-217ENST00000514987 GPR160Q9UJ42 338 aa12.83□□□□□ -0.36
NUP54-217ENST00000514987 TUBD1Q9UJT1 453 aa12.83□□□□□ -0.36
NUP54-217ENST00000514987 SCO1O75880 301 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 TNFSF15O95150 251 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 SFTPBP07988 381 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 RFC3P40938 356 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 MEOX1P50221 254 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 PRDX4Q13162 271 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 RAB32Q13637 225 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 IAH1Q2TAA2 248 aaPredicted RBP12.82□□□□□ -0.36
NUP54-217ENST00000514987 CEACAM21Q3KPI0 293 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 SLC22A25Q6T423 547 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 UNQ6126/PRO20091Q6UXV3 157 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 SLC25A26Q70HW3 274 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 MKXQ8IYA7 352 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 ZDHHC23Q8IYP9 409 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 LRTM2Q8N967 370 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 RRNAD1Q96FB5 475 aaKnown RBP12.82□□□□□ -0.36
NUP54-217ENST00000514987 CYYR1Q96J86 154 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 CNTNAP3BQ96NU0 1288 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 HIST1H2AAQ96QV6 131 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 PAPOLGQ9BWT3 736 aaKnown RBP12.82□□□□□ -0.36
NUP54-217ENST00000514987 C1QTNF6Q9BXI9 259 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 HES7Q9BYE0 225 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 CNTNAP3Q9BZ76 1288 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 NAA60Q9H7X0 242 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 TMEM9BQ9NQ34 198 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 CYTL1Q9NRR1 136 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 PLA2G3Q9NZ20 509 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 OR5AC2Q9NZP5 309 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 GSKIPQ9P0R6 139 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 STARD10Q9Y365 291 aa12.82□□□□□ -0.36
NUP54-217ENST00000514987 C5orf49A4QMS7 147 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 MSTNO14793 375 aa12.81□□□□□ -0.36
NUP54-217ENST00000514987 SS18L1O75177 396 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms