RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 HES5Q5TA89 166 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 DCDC5Q6ZRR9 648 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 PXT1Q8NFP0 134 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 RAB39BQ96DA2 213 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 GFI1Q99684 422 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 ZNF665Q9H7R5 613 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 TEX15Q9BXT5 2789 aa12.52□□□□□ -0.41
NUP54-213ENST00000513352 ITPR3Q14573 2671 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 RFPL4AA6NLU0 287 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 RFPL4AL1F8VTS6 287 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 KNG1P01042 644 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 ACAA1P09110 424 aaPredicted RBP12.51□□□□□ -0.41
NUP54-213ENST00000513352 CLEC2LP0C7M8 214 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 DUSP1P28562 367 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 CEBPDP49716 269 aaPredicted RBP12.51□□□□□ -0.41
NUP54-213ENST00000513352 STUMQ69YW2 141 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 LYPD2Q6UXB3 125 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 NLRC3Q7RTR2 1065 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 TPRA1Q86W33 373 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 ANKRD13BQ86YJ7 626 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 CIARTQ8N365 385 aaPredicted RBP12.51□□□□□ -0.41
NUP54-213ENST00000513352 OR8B3Q8NGG8 313 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 OR6M1Q8NGM8 313 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 C12orf43Q96C57 262 aaKnown RBP12.51□□□□□ -0.41
NUP54-213ENST00000513352 OR8B2Q96RD0 313 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 CCL13Q99616 98 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 PATZ1Q9HBE1 687 aaKnown RBP12.51□□□□□ -0.41
NUP54-213ENST00000513352 HES4Q9HCC6 221 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 HMG20AQ9NP66 347 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 PCDHB16Q9NRJ7 776 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 IL36RNQ9UBH0 155 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 MIOXQ9UGB7 285 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 GLS2Q9UI32 602 aa12.51□□□□□ -0.41
NUP54-213ENST00000513352 CCDC160A6NGH7 325 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 SLC17A2O00624 439 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 TMPRSS2O15393 492 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 NDUFA2O43678 99 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 CRTAPO75718 401 aaPredicted RBP12.5□□□□□ -0.41
NUP54-213ENST00000513352 GABARAPO95166 117 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 IGHV2-5P01817 119 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 PSG2P11465 335 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 IL2RGP31785 369 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 SERPINB10P48595 397 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 BMXP51813 675 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 CAPZA1P52907 286 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 CAV3P56539 151 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 CLDN12P56749 244 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 FGF12P61328 243 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 NCS1P62166 190 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 SCN1BQ07699 218 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 LOXL1Q08397 574 aaPredicted RBP12.5□□□□□ -0.41
NUP54-213ENST00000513352 IKZF1Q13422 519 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 GPR176Q14439 515 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 DGUOKQ16854 277 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 C1orf100Q5SVJ3 147 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 SLC16A12Q6ZSM3 486 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 SLC36A1Q7Z2H8 476 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 FAM216BQ8N7L0 139 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 TBC1D15Q8TC07 691 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 FAM46BQ96A09 425 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 NEIL1Q96FI4 390 aaPredicted RBP12.5□□□□□ -0.41
NUP54-213ENST00000513352 KCNK15Q9H427 330 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 BANF2Q9H503 90 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 RHOFQ9HBH0 211 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 LPAR2Q9HBW0 351 aa12.5□□□□□ -0.41
NUP54-213ENST00000513352 DOCK11Q5JSL3 2073 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 IGKV1D-17A0A075B6S4 117 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 A0A096LNT2 108 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 A0A1B0GW55 424 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 A0A1W2PP11 408 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 NOTOA8MTQ0 251 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 SLC22A1O15245 554 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 ZNF780AO75290 641 aaPredicted RBP12.49□□□□□ -0.41
NUP54-213ENST00000513352 FSTL3O95633 263 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 HAND1O96004 215 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 UBBP0CG47 229 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 DUX4L2P0CJ85 424 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 DUX4L3P0CJ86 424 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 DUX4L4P0CJ87 422 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 DUX4L5P0CJ88 424 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 DUX4L6P0CJ89 424 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 DUX4L7P0CJ90 424 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 PRDX2P32119 198 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 PITPNBP48739 271 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 LMO4P61968 165 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 PIGYQ3MUY2 71 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 ESCO2Q56NI9 601 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 DUX4L9Q6RFH8 374 aaPredicted RBP12.49□□□□□ -0.41
NUP54-213ENST00000513352 ASCL4Q6XD76 172 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 SPNS3Q6ZMD2 512 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 LYPD6Q86Y78 171 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 OSR2Q8N2R0 312 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 ASCC1Q8N9N2 400 aaKnown RBP12.49□□□□□ -0.41
NUP54-213ENST00000513352 ANGPTL6Q8NI99 470 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 CST11Q9H112 138 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 IL36GQ9NZH8 169 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 DUX4Q9UBX2 424 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 STEAP1Q9UHE8 339 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 DAPK2Q9UIK4 370 aa12.49□□□□□ -0.41
NUP54-213ENST00000513352 MED13LQ71F56 2210 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms