RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 OR2AE1Q8NHA4 323 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 S100A13Q99584 98 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 PLEKHA2Q9HB19 425 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 ZNF160Q9HCG1 818 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 COL6A3P12111 3177 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 H0YL77 283 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 KLK3P07288 261 aaPredicted RBP16.09■□□□□ 0.17
CCDC3-201ENST00000378825 LMO1P25800 156 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 HNRNPKP61978 463 aaKnown RBP eCLIP16.09■□□□□ 0.17
CCDC3-201ENST00000378825 PLPPR5Q32ZL2 321 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 ZNF574Q6ZN55 896 aaPredicted RBP16.09■□□□□ 0.17
CCDC3-201ENST00000378825 C17orf82Q86X59 251 aaPredicted RBP16.09■□□□□ 0.17
CCDC3-201ENST00000378825 ZFP62Q8NB50 900 aaPredicted RBP16.09■□□□□ 0.17
CCDC3-201ENST00000378825 SLC38A9Q8NBW4 561 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 PIGQQ9BRB3 760 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 TCEAL7Q9BRU2 100 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 TOLLIPQ9H0E2 274 aa16.09■□□□□ 0.17
CCDC3-201ENST00000378825 IGHV1OR21-1A0A087WYE8 117 aa16.08■□□□□ 0.16
CCDC3-201ENST00000378825 CXCL1P09341 107 aa16.08■□□□□ 0.16
CCDC3-201ENST00000378825 SRFP11831 508 aa16.08■□□□□ 0.16
CCDC3-201ENST00000378825 MEX3BQ6ZN04 569 aaKnown RBP16.08■□□□□ 0.16
CCDC3-201ENST00000378825 WDSUB1Q8N9V3 476 aa16.08■□□□□ 0.16
CCDC3-201ENST00000378825 TMPRSS5Q9H3S3 457 aa16.08■□□□□ 0.16
CCDC3-201ENST00000378825 UCK1Q9HA47 277 aa16.08■□□□□ 0.16
CCDC3-201ENST00000378825 PPP4R1LQ9P1A2 415 aa16.08■□□□□ 0.16
CCDC3-201ENST00000378825 IGHV3-15A0A0B4J1V0 119 aa16.08■□□□□ 0.16
CCDC3-201ENST00000378825 FAM24AA6NFZ4 105 aa16.08■□□□□ 0.16
CCDC3-201ENST00000378825 TSC22D1Q15714 1073 aa16.08■□□□□ 0.16
CCDC3-201ENST00000378825 SNAI3Q3KNW1 292 aa16.08■□□□□ 0.16
CCDC3-201ENST00000378825 SOHLH1Q5JUK2 328 aa16.08■□□□□ 0.16
CCDC3-201ENST00000378825 NSUN5P2Q63ZY6 315 aa16.08■□□□□ 0.16
CCDC3-201ENST00000378825 SPNS3Q6ZMD2 512 aa16.08■□□□□ 0.16
CCDC3-201ENST00000378825 RHOVQ96L33 236 aa16.08■□□□□ 0.16
CCDC3-201ENST00000378825 WDFY4Q6ZS81 3184 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 BORCS7-ASMTA0A0B4J1R7 106 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 ONECUT2O95948 504 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 ZNF728P0DKX0 622 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 ZNF41P51814 821 aaPredicted RBP16.07■□□□□ 0.16
CCDC3-201ENST00000378825 CLDN17P56750 224 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 RHEBQ15382 184 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 TMEM176BQ3YBM2 270 aaPredicted RBP16.07■□□□□ 0.16
CCDC3-201ENST00000378825 FBXW12Q6X9E4 464 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 TM2D1Q9BX74 207 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 NAA60Q9H7X0 242 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 TRIOBPQ9H2D6 2365 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 CCDC85CA6NKD9 419 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 H7C1Q1 480 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 K7N7A8 449 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 GPR137BO60478 399 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 NXPH3O95157 252 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 NXPH1P58417 271 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 ABCA11PQ4W5N1 156 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 SLC39A7Q92504 469 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 ZNF837Q96EG3 531 aaPredicted RBP16.07■□□□□ 0.16
CCDC3-201ENST00000378825 Q96M66 194 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 PFDN5Q99471 154 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 SLC2A9Q9NRM0 540 aa16.07■□□□□ 0.16
CCDC3-201ENST00000378825 IGKV1-27A0A075B6S5 117 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 NSG1A0A0A6YYJ2 146 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 TRBV11-1A0A0K0K1C0 115 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 FAM230AA0A1W2PPH8 454 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 PIAS2O75928 621 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 Q6ZPA2 131 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 SUMF2Q8NBJ7 301 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 MUCL1Q96DR8 90 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 MALSU1Q96EH3 234 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 DOK5Q9P104 306 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 RAB2AP61019 212 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 PIGYQ3MUY2 71 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 SLC16A14Q7RTX9 510 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 ZNF383Q8NA42 475 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 Q8WTZ3 238 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 HAS2Q92819 552 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 RAB39BQ96DA2 213 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 MVB12AQ96EY5 273 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 HS3ST3B1Q9Y662 390 aa16.06■□□□□ 0.16
CCDC3-201ENST00000378825 A0A1B0GX78 115 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 DHRS3O75911 302 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 PTGDSP41222 190 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 MTCP1P56278 107 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 ERVFRD-1P60508 538 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 MSI2Q96DH6 328 aaKnown RBP16.05■□□□□ 0.16
CCDC3-201ENST00000378825 TP53RKQ96S44 253 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 MAGT1Q9H0U3 335 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 SDHAF3Q9NRP4 125 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 ZNF407Q9C0G0 2248 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 H3BQ15 152 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 PHF1O43189 567 aaPredicted RBP16.05■□□□□ 0.16
CCDC3-201ENST00000378825 HOXA5P20719 270 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 PRAMEF20Q5VT98 475 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 TMEM171Q8WVE6 324 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 NTNG2Q96CW9 530 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 CHST5Q9GZS9 411 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 FGF21Q9NSA1 209 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 DECR2Q9NUI1 292 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 KCNIP3Q9Y2W7 256 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 LIPGQ9Y5X9 500 aa16.05■□□□□ 0.16
CCDC3-201ENST00000378825 TGIF2-C20orf24A0A0A6YYL0 155 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 ZNF726A6NNF4 738 aa16.04■□□□□ 0.16
CCDC3-201ENST00000378825 RRP8O43159 456 aaKnown RBP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms