RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 PTBP3O95758 552 aaKnown RBP15.76■□□□□ 0.11
CLN3-206ENST00000360019 MELTFP08582 738 aa15.76■□□□□ 0.11
CLN3-206ENST00000360019 RNF224P0DH78 156 aa15.76■□□□□ 0.11
CLN3-206ENST00000360019 PRSS3P35030 304 aa15.76■□□□□ 0.11
CLN3-206ENST00000360019 SERPINF1P36955 418 aa15.76■□□□□ 0.11
CLN3-206ENST00000360019 GDNFP39905 211 aa15.76■□□□□ 0.11
CLN3-206ENST00000360019 OLFML2AQ68BL7 652 aa15.76■□□□□ 0.11
CLN3-206ENST00000360019 ZNF826PQ6ZT77 177 aa15.76■□□□□ 0.11
CLN3-206ENST00000360019 SEH1LQ96EE3 360 aa15.76■□□□□ 0.11
CLN3-206ENST00000360019 LRBAP50851 2863 aa15.76■□□□□ 0.11
CLN3-206ENST00000360019 SPTAN1Q13813 2472 aaKnown RBP15.76■□□□□ 0.11
CLN3-206ENST00000360019 MFNGO00587 321 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 IGHV1-46P01743 117 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 PGA5P0DJD9 388 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 IGFBP2P18065 325 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 DEFA1P59665 94 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 DEFA3P59666 94 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 ERVK11-1P61568 191 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 MZT1Q08AG7 82 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 ASAH1Q13510 395 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 NHLRC3Q5JS37 347 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 ZNF57Q68EA5 555 aaPredicted RBP15.75■□□□□ 0.11
CLN3-206ENST00000360019 SETD6Q8TBK2 473 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 GPX8Q8TED1 209 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 OR2V2Q96R30 315 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 NRIP2Q9BQI9 281 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 C11orf54Q9H0W9 315 aaPredicted RBP15.75■□□□□ 0.11
CLN3-206ENST00000360019 UFSP2Q9NUQ7 469 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 MEIS3P1A6NDR6 274 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 VSTM5A8MXK1 200 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 H7C417 338 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 INPP1P49441 399 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 SNU13P55769 128 aaKnown RBP15.75■□□□□ 0.11
CLN3-206ENST00000360019 PDCD1Q15116 288 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 WDR82Q6UXN9 313 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 CHPT1Q8WUD6 406 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 MEGF10Q96KG7 1140 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 PECRQ9BY49 303 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 CISD1Q9NZ45 108 aaKnown RBP15.75■□□□□ 0.11
CLN3-206ENST00000360019 MTFP1Q9UDX5 166 aa15.75■□□□□ 0.11
CLN3-206ENST00000360019 RALYQ9UKM9 306 aaKnown RBP15.75■□□□□ 0.11
CLN3-206ENST00000360019 CHD3Q12873 2000 aaKnown RBP15.74■□□□□ 0.11
CLN3-206ENST00000360019 A6NLC8 198 aa15.74■□□□□ 0.11
CLN3-206ENST00000360019 SSX4O60224 188 aa15.74■□□□□ 0.11
CLN3-206ENST00000360019 GSTP1P09211 210 aaKnown RBP15.74■□□□□ 0.11
CLN3-206ENST00000360019 PRKACAP17612 351 aa15.74■□□□□ 0.11
CLN3-206ENST00000360019 APOBEC3AP31941 199 aaPredicted RBP15.74■□□□□ 0.11
CLN3-206ENST00000360019 RBMXP38159 391 aaKnown RBP15.74■□□□□ 0.11
CLN3-206ENST00000360019 HOXA4Q00056 320 aaPredicted RBP15.74■□□□□ 0.11
CLN3-206ENST00000360019 OXA1LQ15070 435 aa15.74■□□□□ 0.11
CLN3-206ENST00000360019 ZNF672Q499Z4 452 aaPredicted RBP15.74■□□□□ 0.11
CLN3-206ENST00000360019 HACD4Q5VWC8 232 aa15.74■□□□□ 0.11
CLN3-206ENST00000360019 C6orf201Q7Z4U5 140 aa15.74■□□□□ 0.11
CLN3-206ENST00000360019 FAM58AQ8N1B3 248 aa15.74■□□□□ 0.11
CLN3-206ENST00000360019 NUDCD2Q8WVJ2 157 aa15.74■□□□□ 0.11
CLN3-206ENST00000360019 ST8SIA4Q92187 359 aa15.74■□□□□ 0.11
CLN3-206ENST00000360019 EMG1Q92979 244 aaKnown RBP15.74■□□□□ 0.11
CLN3-206ENST00000360019 SCPEP1Q9HB40 452 aa15.74■□□□□ 0.11
CLN3-206ENST00000360019 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.74■□□□□ 0.11
CLN3-206ENST00000360019 ZDHHC8Q9ULC8 765 aa15.74■□□□□ 0.11
CLN3-206ENST00000360019 SULT1C2O00338 296 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 NOS1APO75052 506 aaPredicted RBP15.73■□□□□ 0.11
CLN3-206ENST00000360019 LPLP06858 475 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 ACAA1P09110 424 aaPredicted RBP15.73■□□□□ 0.11
CLN3-206ENST00000360019 CHATP28329 748 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 KLF9Q13886 244 aaPredicted RBP15.73■□□□□ 0.11
CLN3-206ENST00000360019 NKAPLQ5M9Q1 402 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 CENPSQ8N2Z9 138 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 TOMM5Q8N4H5 51 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 POC1AQ8NBT0 407 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 RHOFQ9HBH0 211 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 CACNA1DQ01668 2161 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 SSX5O60225 188 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 OR7C1O76099 320 aaPredicted RBP15.73■□□□□ 0.11
CLN3-206ENST00000360019 RFX2P48378 723 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 EFNB3Q15768 340 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 MST1LQ2TV78 715 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 DCDC5Q6ZRR9 648 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 CELF2-AS1Q8N7Q2 184 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 ITLN1Q8WWA0 313 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 POM121Q96HA1 1249 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 PLEKHJ1Q9NW61 149 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 C1orf123Q9NWV4 160 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 IL19Q9UHD0 177 aa15.73■□□□□ 0.11
CLN3-206ENST00000360019 DCHS2Q6V1P9 2916 aa15.72■□□□□ 0.11
CLN3-206ENST00000360019 C17orf100A8MU93 164 aa15.72■□□□□ 0.11
CLN3-206ENST00000360019 M0R233 179 aa15.72■□□□□ 0.11
CLN3-206ENST00000360019 RBBP9O75884 186 aa15.72■□□□□ 0.11
CLN3-206ENST00000360019 PTTG1O95997 202 aa15.72■□□□□ 0.11
CLN3-206ENST00000360019 ADH4P08319 380 aa15.72■□□□□ 0.11
CLN3-206ENST00000360019 GMFBP60983 142 aa15.72■□□□□ 0.11
CLN3-206ENST00000360019 TNFAIP6P98066 277 aaPredicted RBP15.72■□□□□ 0.11
CLN3-206ENST00000360019 GDPD3Q7L5L3 318 aa15.72■□□□□ 0.11
CLN3-206ENST00000360019 Q8IYB0 196 aa15.72■□□□□ 0.11
CLN3-206ENST00000360019 ZCCHC24Q8N2G6 241 aaKnown RBP15.72■□□□□ 0.11
CLN3-206ENST00000360019 FAM222BQ8WU58 562 aa15.72■□□□□ 0.11
CLN3-206ENST00000360019 DHRS9Q9BPW9 319 aa15.72■□□□□ 0.11
CLN3-206ENST00000360019 HES4Q9HCC6 221 aa15.72■□□□□ 0.11
CLN3-206ENST00000360019 HSF4Q9ULV5 492 aa15.72■□□□□ 0.11
CLN3-206ENST00000360019 ANKRD20A5PA0PJZ0 165 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms