RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 LURAP1LQ8IV03 231 aa18■□□□□ 0.47
CLK3-202ENST00000395066 BATF2Q8N1L9 274 aa18■□□□□ 0.47
CLK3-202ENST00000395066 TOMM40LQ969M1 308 aa18■□□□□ 0.47
CLK3-202ENST00000395066 ZNF251Q9BRH9 671 aa18■□□□□ 0.47
CLK3-202ENST00000395066 FBXL17Q9UF56 701 aa18■□□□□ 0.47
CLK3-202ENST00000395066 V9GYS6 101 aa18■□□□□ 0.47
CLK3-202ENST00000395066 NPIPA2E9PIF3 369 aa17.99■□□□□ 0.47
CLK3-202ENST00000395066 NPIPA3F8WFD2 350 aa17.99■□□□□ 0.47
CLK3-202ENST00000395066 JTBO76095 146 aa17.99■□□□□ 0.47
CLK3-202ENST00000395066 THBS4P35443 961 aa17.99■□□□□ 0.47
CLK3-202ENST00000395066 H3F3AP84243 136 aa17.99■□□□□ 0.47
CLK3-202ENST00000395066 PDCD1Q15116 288 aa17.99■□□□□ 0.47
CLK3-202ENST00000395066 TSPO2Q5TGU0 170 aa17.99■□□□□ 0.47
CLK3-202ENST00000395066 SLC25A43Q8WUT9 341 aaPredicted RBP17.99■□□□□ 0.47
CLK3-202ENST00000395066 TNFSF11O14788 317 aa17.99■□□□□ 0.47
CLK3-202ENST00000395066 IFNA2P01563 188 aa17.99■□□□□ 0.47
CLK3-202ENST00000395066 FCGR2CP31995 323 aa17.99■□□□□ 0.47
CLK3-202ENST00000395066 RBMXP38159 391 aaKnown RBP17.99■□□□□ 0.47
CLK3-202ENST00000395066 PCOLCEQ15113 449 aa17.99■□□□□ 0.47
CLK3-202ENST00000395066 HMGN3Q15651 99 aa17.99■□□□□ 0.47
CLK3-202ENST00000395066 HAS2Q92819 552 aa17.99■□□□□ 0.47
CLK3-202ENST00000395066 C1orf123Q9NWV4 160 aa17.99■□□□□ 0.47
CLK3-202ENST00000395066 MT-ND4LP03901 98 aa17.98■□□□□ 0.47
CLK3-202ENST00000395066 GAPDHP04406 335 aaKnown RBP17.98■□□□□ 0.47
CLK3-202ENST00000395066 EIF1P41567 113 aaKnown RBP17.98■□□□□ 0.47
CLK3-202ENST00000395066 MTCP1P56278 107 aa17.98■□□□□ 0.47
CLK3-202ENST00000395066 LSM6P62312 80 aaKnown RBP17.98■□□□□ 0.47
CLK3-202ENST00000395066 ZC3HAV1Q7Z2W4 902 aaKnown RBP17.98■□□□□ 0.47
CLK3-202ENST00000395066 SULF2Q8IWU5 870 aa17.98■□□□□ 0.47
CLK3-202ENST00000395066 ZNF561Q8N587 486 aa17.98■□□□□ 0.47
CLK3-202ENST00000395066 LYPD6BQ8NI32 183 aa17.98■□□□□ 0.47
CLK3-202ENST00000395066 TCEAL3Q969E4 200 aa17.98■□□□□ 0.47
CLK3-202ENST00000395066 SGK3Q96BR1 496 aa17.98■□□□□ 0.47
CLK3-202ENST00000395066 BSCL2Q96G97 398 aaPredicted RBP17.98■□□□□ 0.47
CLK3-202ENST00000395066 NSUN5P2Q63ZY6 315 aa17.98■□□□□ 0.47
CLK3-202ENST00000395066 GSN-AS1Q9NRJ2 163 aa17.98■□□□□ 0.47
CLK3-202ENST00000395066 COL6A3P12111 3177 aa17.97■□□□□ 0.47
CLK3-202ENST00000395066 IGKV1-27A0A075B6S5 117 aa17.97■□□□□ 0.47
CLK3-202ENST00000395066 SERPINE3A8MV23 424 aa17.97■□□□□ 0.47
CLK3-202ENST00000395066 TOX3O15405 576 aaPredicted RBP17.97■□□□□ 0.47
CLK3-202ENST00000395066 DHHO43323 396 aa17.97■□□□□ 0.47
CLK3-202ENST00000395066 AGAP20933 346 aa17.97■□□□□ 0.47
CLK3-202ENST00000395066 OR9K2Q8NGE7 335 aa17.97■□□□□ 0.47
CLK3-202ENST00000395066 C19orf25Q9UFG5 118 aaPredicted RBP17.97■□□□□ 0.47
CLK3-202ENST00000395066 MRPS17Q9Y2R5 130 aaKnown RBP17.97■□□□□ 0.47
CLK3-202ENST00000395066 CTSSP25774 331 aa17.97■□□□□ 0.47
CLK3-202ENST00000395066 TMEM33P57088 247 aa17.97■□□□□ 0.47
CLK3-202ENST00000395066 FXYD4P59646 89 aa17.97■□□□□ 0.47
CLK3-202ENST00000395066 SURF2Q15527 256 aaPredicted RBP17.97■□□□□ 0.47
CLK3-202ENST00000395066 AWAT1Q58HT5 328 aa17.97■□□□□ 0.47
CLK3-202ENST00000395066 RPUSD3Q6P087 351 aaKnown RBP17.97■□□□□ 0.47
CLK3-202ENST00000395066 MRPL14Q6P1L8 145 aaKnown RBP17.97■□□□□ 0.47
CLK3-202ENST00000395066 OPN5Q6U736 354 aa17.97■□□□□ 0.47
CLK3-202ENST00000395066 TMEM123Q8N131 208 aa17.97■□□□□ 0.47
CLK3-202ENST00000395066 TM2D1Q9BX74 207 aa17.97■□□□□ 0.47
CLK3-202ENST00000395066 SRXN1Q9BYN0 137 aa17.97■□□□□ 0.47
CLK3-202ENST00000395066 ULBP2Q9BZM5 246 aa17.97■□□□□ 0.47
CLK3-202ENST00000395066 PROK2Q9HC23 129 aa17.97■□□□□ 0.47
CLK3-202ENST00000395066 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.97■□□□□ 0.474e-6■■■□□ 18.6
CLK3-202ENST00000395066 A0A0U1RQV5 110 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 A0A1W2PPE3 182 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 TP53I11O14683 189 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 ZNHIT1O43257 154 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 DEDDO75618 318 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 SNRNP70P08621 437 aaKnown RBP17.96■□□□□ 0.47
CLK3-202ENST00000395066 NTF4P34130 210 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 FAM3AP98173 230 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 GGNBP1Q5YKI7 109 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 SLC16A14Q7RTX9 510 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 FNDC9Q8TBE3 224 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 TMEM54Q969K7 222 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 MARS2Q96GW9 593 aaKnown RBP17.96■□□□□ 0.47
CLK3-202ENST00000395066 UBE2ZQ9H832 354 aaPredicted RBP17.96■□□□□ 0.47
CLK3-202ENST00000395066 NIT2Q9NQR4 276 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 AK3Q9UIJ7 227 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 SHANK1Q9Y566 2161 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 CCDC85CA6NKD9 419 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 ZIC3O60481 467 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 TSPAN15O95858 294 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 EPHA8P29322 1005 aaPredicted RBP17.96■□□□□ 0.47
CLK3-202ENST00000395066 ALDH3B1P43353 468 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 ZIC4Q8N9L1 334 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 ERGIC1Q969X5 290 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 Q96M66 194 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 PRRX2Q99811 253 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 SEBOXQ9HB31 216 aaPredicted RBP17.96■□□□□ 0.47
CLK3-202ENST00000395066 AMDHD2Q9Y303 409 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 STARD10Q9Y365 291 aa17.96■□□□□ 0.47
CLK3-202ENST00000395066 A0A0J9YW62 118 aa17.95■□□□□ 0.46
CLK3-202ENST00000395066 C7orf77A4D0Y5 90 aa17.95■□□□□ 0.46
CLK3-202ENST00000395066 FABP9Q0Z7S8 132 aa17.95■□□□□ 0.46
CLK3-202ENST00000395066 TGIF1Q15583 401 aa17.95■□□□□ 0.46
CLK3-202ENST00000395066 ZNF239Q16600 458 aaKnown RBP17.95■□□□□ 0.46
CLK3-202ENST00000395066 C10orf128Q5T292 105 aa17.95■□□□□ 0.46
CLK3-202ENST00000395066 ZNF468Q5VIY5 522 aaPredicted RBP17.95■□□□□ 0.46
CLK3-202ENST00000395066 ZNF774Q6NX45 483 aa17.95■□□□□ 0.46
CLK3-202ENST00000395066 SPEM1Q8N4L4 309 aa17.95■□□□□ 0.46
CLK3-202ENST00000395066 PP6455Q8WZ26 134 aa17.95■□□□□ 0.46
CLK3-202ENST00000395066 RGCCQ9H4X1 137 aa17.95■□□□□ 0.46
CLK3-202ENST00000395066 NXT1Q9UKK6 140 aaKnown RBP17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms