RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 PSMB5P28074 263 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 G6PCP35575 357 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 PNLIPRP3Q17RR3 467 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 FNDC7Q5VTL7 733 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 CLEC6AQ6EIG7 209 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 CFAP161Q6P656 301 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 ASCL4Q6XD76 172 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 KCTD9Q7L273 389 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 CCL4L1Q8NHW4 92 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 FAM208AQ9UK61 1670 aaKnown RBP3.6□□□□□ -1.83
USH2A-202ENST00000366942 CASZ1Q86V15 1759 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 CADP27708 2225 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 ZNF593O00488 134 aaPredicted RBP3.6□□□□□ -1.83
USH2A-202ENST00000366942 MGST3O14880 152 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 ORC5O43913 435 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 PRSS2P07478 247 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 THBS1P07996 1170 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 IL6RP08887 468 aaPredicted RBP3.6□□□□□ -1.83
USH2A-202ENST00000366942 LCN2P80188 198 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 SRSF7Q16629 238 aaKnown RBP eCLIP3.6□□□□□ -1.83
USH2A-202ENST00000366942 MOGAT2Q3SYC2 334 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 SPANXN4Q5MJ08 99 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 LRRC75A-AS1Q8N1F1 130 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 ZNF511Q8NB15 262 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 C16orf52Q8NHV5 167 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 MRGPRDQ8TDS7 321 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 ABHD3Q8WU67 409 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 LINC01599Q8WXQ3 324 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 SEH1LQ96EE3 360 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 FOXN4Q96NZ1 517 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 CXorf36Q9H7Y0 433 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 VAPAQ9P0L0 249 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 WNK1Q9H4A3 2382 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 BDP1A6H8Y1 2624 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 NKX2-6A6NCS4 301 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 CHST1O43916 411 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 DFFBO76075 338 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 NCK1P16333 377 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 ADRA2CP18825 462 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 SLC6A1P30531 599 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 RPL35P42766 123 aaKnown RBP3.6□□□□□ -1.83
USH2A-202ENST00000366942 HAAOP46952 286 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 GSCP56915 257 aaPredicted RBP3.6□□□□□ -1.83
USH2A-202ENST00000366942 DNAJB13P59910 316 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 RNF220Q5VTB9 566 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 BEND2Q8NDZ0 799 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 OR13C9Q8NGT0 318 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 DTD1Q8TEA8 209 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 ST6GALNAC6Q969X2 333 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 ZNF486Q96H40 463 aaPredicted RBP3.6□□□□□ -1.83
USH2A-202ENST00000366942 HSH2DQ96JZ2 352 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 ZNF75AQ96N20 296 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 TPPP3Q9BW30 176 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 PRDM13Q9H4Q3 707 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 ASH2LQ9UBL3 628 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 EXTL2Q9UBQ6 330 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 ADAMTS7Q9UKP4 1686 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 ZNF835Q9Y2P0 537 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 SMAD5-AS1Q9Y6J3 95 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 U3KQV3 271 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 NAV3Q8IVL0 2385 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 ATP6V1G2-DDX39BF2Z307 99 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 GYPCP04921 128 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 GPX1P07203 203 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 FCGR3AP08637 254 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 IGFBP1P08833 259 aaPredicted RBP3.6□□□□□ -1.83
USH2A-202ENST00000366942 H2AFB1P0C5Y9 115 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 GAAP10253 952 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 RAB4AP20338 218 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 NPPCP23582 126 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 SLC6A12P48065 614 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 IDH3AP50213 366 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 AKR1D1P51857 326 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 SOWAHCQ53LP3 525 aaPredicted RBP3.6□□□□□ -1.83
USH2A-202ENST00000366942 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.6□□□□□ -1.83
USH2A-202ENST00000366942 Q6ZS92 163 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 SYT9Q86SS6 491 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 ACBD4Q8NC06 268 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 MISP3Q96FF7 219 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 TMEM80Q96HE8 168 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 NPAS1Q99742 590 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 FOXJ2Q9P0K8 574 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 RICTORQ6R327 1708 aa3.6□□□□□ -1.83
USH2A-202ENST00000366942 CHD4Q14839 1912 aa3.59□□□□□ -1.83
USH2A-202ENST00000366942 IGKV3-7A0A075B6H7 116 aa3.59□□□□□ -1.83
USH2A-202ENST00000366942 A0A087WV48 116 aa3.59□□□□□ -1.83
USH2A-202ENST00000366942 C1QAP02745 245 aa3.59□□□□□ -1.83
USH2A-202ENST00000366942 S100A6P06703 90 aa3.59□□□□□ -1.83
USH2A-202ENST00000366942 EVI2AP22794 236 aa3.59□□□□□ -1.83
USH2A-202ENST00000366942 CD40P25942 277 aa3.59□□□□□ -1.83
USH2A-202ENST00000366942 CCR7P32248 378 aa3.59□□□□□ -1.83
USH2A-202ENST00000366942 VHLP40337 213 aa3.59□□□□□ -1.83
USH2A-202ENST00000366942 CLDN6P56747 220 aa3.59□□□□□ -1.83
USH2A-202ENST00000366942 ZP1P60852 638 aa3.59□□□□□ -1.83
USH2A-202ENST00000366942 PMP22Q01453 160 aa3.59□□□□□ -1.83
USH2A-202ENST00000366942 SPATA46Q5T0L3 261 aa3.59□□□□□ -1.83
USH2A-202ENST00000366942 TMEM252Q8N6L7 170 aa3.59□□□□□ -1.83
USH2A-202ENST00000366942 SUMF1Q8NBK3 374 aa3.59□□□□□ -1.83
USH2A-202ENST00000366942 NOXO1Q8NFA2 376 aa3.59□□□□□ -1.83
USH2A-202ENST00000366942 OR2M3Q8NG83 312 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms