RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 FCARP24071 287 aa11.35□□□□□ -0.59
SFSWAP-209ENST00000540469 P2RY1P47900 373 aa11.35□□□□□ -0.59
SFSWAP-209ENST00000540469 TMEM50BP56557 158 aa11.35□□□□□ -0.59
SFSWAP-209ENST00000540469 DLK1P80370 383 aa11.35□□□□□ -0.59
SFSWAP-209ENST00000540469 NHLH2Q02577 135 aa11.35□□□□□ -0.59
SFSWAP-209ENST00000540469 TMEM156Q8N614 296 aa11.35□□□□□ -0.59
SFSWAP-209ENST00000540469 C19orf47Q8N9M1 422 aaKnown RBP11.35□□□□□ -0.59
SFSWAP-209ENST00000540469 DAZLQ92904 295 aaKnown RBP11.35□□□□□ -0.59
SFSWAP-209ENST00000540469 SUSD2Q9UGT4 822 aa11.35□□□□□ -0.59
SFSWAP-209ENST00000540469 PRR19A6NJB7 356 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 ZNF850A8MQ14 1090 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 ZNF705GA8MUZ8 300 aaPredicted RBP11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 HIST1H2BKO60814 126 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 ZNF205O95201 554 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 IL33O95760 270 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 IFNA10P01566 189 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 HIST1H2BJP06899 126 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 CXCL1P09341 107 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 HNRNPA1P09651 372 aaKnown RBP eCLIP11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 HIST1H2BOP23527 126 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 GABRR1P24046 479 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 HIST1H2BBP33778 126 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 HIST1H2BDP58876 126 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 HIST1H2BCP62807 126 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 QRFPP83859 136 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 GNMTQ14749 295 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 HIST2H2BEQ16778 126 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 ZNF429Q86V71 674 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 ARHGEF39Q8N4T4 335 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 HIST1H2BHQ93079 126 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 MUCL1Q96DR8 90 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 HIST1H2BNQ99877 126 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 HIST1H2BMQ99879 126 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 PADI1Q9ULC6 663 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 OSGIN2Q9Y236 505 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 COL4A6Q14031 1691 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 RBFOX3A6NFN3 312 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 SOD3P08294 240 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 IFI6P09912 130 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 GABRA4P48169 554 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 MMP16P51512 607 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 PLCXD2Q0VAA5 305 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 RUNX3Q13761 415 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 ALKBH2Q6NS38 261 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 OGFOD3Q6PK18 319 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 ZNF574Q6ZN55 896 aaPredicted RBP11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 NAXEQ8NCW5 288 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 ELSPBP1Q96BH3 223 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 PACRGQ96M98 296 aaPredicted RBP11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 CFHR5Q9BXR6 569 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 RTN4RQ9BZR6 473 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 SOHLH2Q9NX45 425 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 SRPK3Q9UPE1 567 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 TMEM184BQ9Y519 407 aaPredicted RBP11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 LIPGQ9Y5X9 500 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 SLC33A1O00400 549 aaPredicted RBP11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 CYTIPO60759 359 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 MBPP02686 304 aaPredicted RBP11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 THBS4P35443 961 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 MNX1P50219 401 aaPredicted RBP11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 PIGPP57054 158 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 FUT7Q11130 342 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 PHLDA2Q53GA4 152 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 TMEM31Q5JXX7 168 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 SNIP1Q8TAD8 396 aaKnown RBP11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 NTNG2Q96CW9 530 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 TMEM68Q96MH6 324 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 BCO1Q9HAY6 547 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 GPR84Q9NQS5 396 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 AK3Q9UIJ7 227 aa11.34□□□□□ -0.59
SFSWAP-209ENST00000540469 A6NIZ1 184 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 ZNF724A8MTY0 619 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 PLPP3O14495 311 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 ADAM10O14672 748 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 GPR137BO60478 399 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 JMJD7P0C870 316 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 TMEM225BP0DP42 221 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 IL11P20809 199 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 POLR2HP52434 150 aaKnown RBP11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 RAP1BP61224 184 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 TSPO2Q5TGU0 170 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 CPEB2Q7Z5Q1 589 aaKnown RBP11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 ZNF283Q8N7M2 679 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 GALNT14Q96FL9 552 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 SOX7Q9BT81 388 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 PLEKHJ1Q9NW61 149 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 RP1P56715 2156 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 WISP1O95388 367 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 COX5BP10606 129 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 FOXK1P85037 733 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 TLE3Q04726 772 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 PRTGQ2VWP7 1150 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 MEX3BQ6ZN04 569 aaKnown RBP11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 LYPD6BQ8NI32 183 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 C11orf40Q8WZ69 217 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 THOC3Q96J01 351 aaKnown RBP11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 SNX22Q96L94 193 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 WFDC1Q9HC57 220 aa11.33□□□□□ -0.6
SFSWAP-209ENST00000540469 NSG1A0A0A6YYJ2 146 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 201 ms