RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 hCG_1807616A0A1W2PRN6 198 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 PIN1P1O15428 100 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 PRKACBP22694 351 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 SHEQ5VZ18 495 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 TMEM91Q6ZNR0 172 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 SCCPDHQ8NBX0 429 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 DNAAF1Q8NEP3 725 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 CREBBPQ92793 2442 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 IGKV1-27A0A075B6S5 117 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 GABRPO00591 440 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 CDIPTO14735 213 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 JUNBP17275 347 aaPredicted RBP24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 HAAOP46952 286 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 DSCR9P59020 149 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 HAGHLQ6PII5 290 aaPredicted RBP24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 UNQ9370/PRO34162Q6UXP9 181 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 C11orf53Q8IXP5 236 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 OR11L1Q8NGX0 322 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 C10orf105Q8TEF2 133 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 HPS1Q92902 700 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 SPACA5Q96QH8 159 aa24.97■■□□□ 1.59
LIMCH1-211ENST00000509638 FLNAP21333 2647 aaKnown RBP24.96■■□□□ 1.59
LIMCH1-211ENST00000509638 LRRC30A6NM36 301 aa24.96■■□□□ 1.59
LIMCH1-211ENST00000509638 CLDN25C9JDP6 229 aa24.96■■□□□ 1.59
LIMCH1-211ENST00000509638 CYB5R3P00387 301 aaPredicted RBP24.96■■□□□ 1.59
LIMCH1-211ENST00000509638 HCKP08631 526 aa24.96■■□□□ 1.59
LIMCH1-211ENST00000509638 IGFBP3P17936 291 aaPredicted RBP24.96■■□□□ 1.59
LIMCH1-211ENST00000509638 RIN1Q13671 783 aa24.96■■□□□ 1.59
LIMCH1-211ENST00000509638 LHFPL2Q6ZUX7 228 aa24.96■■□□□ 1.59
LIMCH1-211ENST00000509638 ZNF573Q86YE8 665 aa24.96■■□□□ 1.59
LIMCH1-211ENST00000509638 IGHV4-30-2A0A087WSY4 118 aa24.95■■□□□ 1.58
LIMCH1-211ENST00000509638 IFNL4K9M1U5 179 aa24.95■■□□□ 1.58
LIMCH1-211ENST00000509638 ALX3O95076 343 aa24.95■■□□□ 1.58
LIMCH1-211ENST00000509638 IRF2P14316 349 aa24.95■■□□□ 1.58
LIMCH1-211ENST00000509638 TGFBR2P37173 567 aa24.95■■□□□ 1.58
LIMCH1-211ENST00000509638 RBP2P50120 134 aa24.95■■□□□ 1.58
LIMCH1-211ENST00000509638 ZNF181Q2M3W8 571 aa24.95■■□□□ 1.58
LIMCH1-211ENST00000509638 WDR82Q6UXN9 313 aa24.95■■□□□ 1.58
LIMCH1-211ENST00000509638 WFDC11Q8NEX6 87 aa24.95■■□□□ 1.58
LIMCH1-211ENST00000509638 PIMREGQ9BSJ6 248 aa24.95■■□□□ 1.58
LIMCH1-211ENST00000509638 NEK6Q9HC98 313 aa24.95■■□□□ 1.58
LIMCH1-211ENST00000509638 NDUFS8O00217 210 aa24.94■■□□□ 1.58
LIMCH1-211ENST00000509638 PPIHO43447 177 aaKnown RBP24.94■■□□□ 1.58
LIMCH1-211ENST00000509638 UCHL1P09936 223 aa24.94■■□□□ 1.58
LIMCH1-211ENST00000509638 GIFP27352 417 aa24.94■■□□□ 1.58
LIMCH1-211ENST00000509638 MTCP1P56278 107 aa24.94■■□□□ 1.58
LIMCH1-211ENST00000509638 HOXA4Q00056 320 aaPredicted RBP24.94■■□□□ 1.58
LIMCH1-211ENST00000509638 CD200R1LQ6Q8B3 271 aa24.94■■□□□ 1.58
LIMCH1-211ENST00000509638 ANGPTL5Q86XS5 388 aa24.94■■□□□ 1.58
LIMCH1-211ENST00000509638 CALHM1Q8IU99 346 aa24.94■■□□□ 1.58
LIMCH1-211ENST00000509638 Q96MF0 132 aa24.94■■□□□ 1.58
LIMCH1-211ENST00000509638 BPESC1Q9GZL8 116 aa24.94■■□□□ 1.58
LIMCH1-211ENST00000509638 PPIL3Q9H2H8 161 aaKnown RBP24.94■■□□□ 1.58
LIMCH1-211ENST00000509638 TMEM178BH3BS89 294 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 J3QT63 122 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 PLATP00750 562 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 ATP1B3P54709 279 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 HSD17B12Q53GQ0 312 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 AQP3Q92482 292 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 RFT1Q96AA3 541 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 TMEM138Q9NPI0 162 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 RNF7Q9UBF6 113 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 FOXJ3Q9UPW0 622 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 GPX5O75715 221 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 RHBDL1O75783 438 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 CD36P16671 472 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 TMEM33P57088 247 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 RNF144BQ7Z419 303 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 C1orf87Q8N0U7 546 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 OR52N4Q8NGI2 321 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 LRRC29Q8WV35 223 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 METTL17Q9H7H0 456 aaPredicted RBP24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 STUB1Q9UNE7 303 aa24.93■■□□□ 1.58
LIMCH1-211ENST00000509638 ZNF469Q96JG9 3925 aaPredicted RBP24.92■■□□□ 1.58
LIMCH1-211ENST00000509638 MAGEB3O15480 346 aa24.92■■□□□ 1.58
LIMCH1-211ENST00000509638 BDKRB2P30411 391 aa24.92■■□□□ 1.58
LIMCH1-211ENST00000509638 GPR6P46095 362 aaPredicted RBP24.92■■□□□ 1.58
LIMCH1-211ENST00000509638 DDI2Q5TDH0 399 aa24.92■■□□□ 1.58
LIMCH1-211ENST00000509638 TRDV1A0A1B0GX56 115 aa24.91■■□□□ 1.58
LIMCH1-211ENST00000509638 ARL6IP5O75915 188 aa24.91■■□□□ 1.58
LIMCH1-211ENST00000509638 MAS1P04201 325 aa24.91■■□□□ 1.58
LIMCH1-211ENST00000509638 MPZP25189 248 aa24.91■■□□□ 1.58
LIMCH1-211ENST00000509638 POU3F4P49335 361 aa24.91■■□□□ 1.58
LIMCH1-211ENST00000509638 KISS1Q15726 138 aa24.91■■□□□ 1.58
LIMCH1-211ENST00000509638 AVPI1Q5T686 147 aa24.91■■□□□ 1.58
LIMCH1-211ENST00000509638 PHYHIPQ92561 330 aa24.91■■□□□ 1.58
LIMCH1-211ENST00000509638 TIMD4Q96H15 378 aa24.91■■□□□ 1.58
LIMCH1-211ENST00000509638 TCF7L1Q9HCS4 588 aa24.91■■□□□ 1.58
LIMCH1-211ENST00000509638 WIPI2Q9Y4P8 454 aa24.91■■□□□ 1.58
LIMCH1-211ENST00000509638 SYNGR1O43759 233 aa24.9■■□□□ 1.58
LIMCH1-211ENST00000509638 ZNF205O95201 554 aa24.9■■□□□ 1.58
LIMCH1-211ENST00000509638 GALP22466 123 aa24.9■■□□□ 1.58
LIMCH1-211ENST00000509638 CALRP27797 417 aaKnown RBP24.9■■□□□ 1.58
LIMCH1-211ENST00000509638 FAM201AQ5SY85 155 aa24.9■■□□□ 1.58
LIMCH1-211ENST00000509638 CRIP3Q6Q6R5 217 aa24.9■■□□□ 1.58
LIMCH1-211ENST00000509638 PEG10Q86TG7 708 aaKnown RBP24.9■■□□□ 1.58
LIMCH1-211ENST00000509638 GCSAMQ8N6F7 178 aa24.9■■□□□ 1.58
LIMCH1-211ENST00000509638 BOLLQ8N9W6 283 aaKnown RBP24.9■■□□□ 1.58
LIMCH1-211ENST00000509638 OR5D18Q8NGL1 313 aa24.9■■□□□ 1.58
LIMCH1-211ENST00000509638 CPNE2Q96FN4 548 aaPredicted RBP24.9■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms