RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 VAMP2P63027 116 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 PRDX4Q13162 271 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 P2RY6Q15077 328 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 ZNF74Q16587 644 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 NKAIN1Q4KMZ8 207 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 ZNF880Q6PDB4 577 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 RNF44Q7L0R7 432 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 MFSD9Q8NBP5 474 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 MRPL24Q96A35 216 aaKnown RBP12.2□□□□□ -0.46
HDAC1-206ENST00000476391 GPR84Q9NQS5 396 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.2□□□□□ -0.46
HDAC1-206ENST00000476391 SCN3AQ9NY46 2000 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 MPDZO75970 2070 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 A0A0C4DFX4 3053 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 LOC107986453A0A1B0GWG9 222 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 LCATP04180 440 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 HIST1H1DP16402 221 aaKnown RBP12.2□□□□□ -0.46
HDAC1-206ENST00000476391 ZNF43P17038 809 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 AMY2BP19961 511 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 MDKP21741 143 aaPredicted RBP12.2□□□□□ -0.46
HDAC1-206ENST00000476391 RAB28P51157 221 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 RAB38P57729 211 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 RANP62826 216 aaKnown RBP12.2□□□□□ -0.46
HDAC1-206ENST00000476391 ACOT6Q3I5F7 207 aaPredicted RBP12.2□□□□□ -0.46
HDAC1-206ENST00000476391 FAM90A2PQ658T7 463 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 ZNF100Q8IYN0 542 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 GBGT1Q8N5D6 347 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 C11orf42Q8N5U0 333 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 ZFP62Q8NB50 900 aaPredicted RBP12.2□□□□□ -0.46
HDAC1-206ENST00000476391 TSLPQ969D9 159 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 RCL1Q9Y2P8 373 aaKnown RBP12.2□□□□□ -0.46
HDAC1-206ENST00000476391 INSL5Q9Y5Q6 135 aa12.2□□□□□ -0.46
HDAC1-206ENST00000476391 PQBP1O60828 265 aaKnown RBP12.19□□□□□ -0.46
HDAC1-206ENST00000476391 NKX2-2O95096 273 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 DIRAS3O95661 229 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 PCCBP05166 539 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 ATP6V0CP27449 155 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 GALNSP34059 522 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 CSNK1A1P48729 337 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 KLF3P57682 345 aaPredicted RBP12.19□□□□□ -0.46
HDAC1-206ENST00000476391 FAM3BP58499 235 aaPredicted RBP12.19□□□□□ -0.46
HDAC1-206ENST00000476391 MORN1Q5T089 497 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 ZNF248Q8NDW4 579 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 IFI44Q8TCB0 444 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 TSPAN32Q96QS1 320 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 SERINC2Q96SA4 455 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 SDF2L1Q9HCN8 221 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 SLC5A6Q9Y289 635 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 OBSL1O75147 1896 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 MYOFQ9NZM1 2061 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 IGKV1D-42A0A075B6H8 117 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 TNFSF13O75888 250 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 NXPH2O95156 264 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 PFN1P07737 140 aaKnown RBP12.19□□□□□ -0.46
HDAC1-206ENST00000476391 GATMP50440 423 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 RAB7AP51149 207 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 HIST1H3AP68431 136 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 ZFP36L1Q07352 338 aaKnown RBP12.19□□□□□ -0.46
HDAC1-206ENST00000476391 DPTQ07507 201 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 POM121L1PQ3SYA9 428 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 C1orf140Q5VVS0 124 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 ASTLQ6HA08 431 aaPredicted RBP12.19□□□□□ -0.46
HDAC1-206ENST00000476391 ETFRF1Q6IPR1 90 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 ARHGEF39Q8N4T4 335 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 OR14L1PQ8NHC6 308 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 LPAR5Q9H1C0 372 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 SERINC1Q9NRX5 453 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 AURKAIP1Q9NWT8 199 aaPredicted RBP12.19□□□□□ -0.46
HDAC1-206ENST00000476391 R4GMQ9 66 aa12.19□□□□□ -0.46
HDAC1-206ENST00000476391 TRBV11-1A0A0K0K1C0 115 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 LOC102723971A0A1B0GUV8 181 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 NKX6-3A6NJ46 265 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 AHSA1O95433 338 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 HLA-DQA2P01906 255 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 ASAH2BP0C7U1 165 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 TMEM225BP0DP42 221 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 FOXK1P85037 733 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 PLAC9Q5JTB6 97 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 COX15Q7KZN9 410 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 ADIPOR2Q86V24 386 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 MRGPRDQ8TDS7 321 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 NICN1Q9BSH3 213 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 ABHD14AQ9BUJ0 271 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 EHFQ9NZC4 300 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 LRP12Q9Y561 859 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 SNRNP200O75643 2136 aaKnown RBP12.18□□□□□ -0.46
HDAC1-206ENST00000476391 CRYM-AS1A6NIL9 109 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 SRSF10O75494 262 aaKnown RBP12.18□□□□□ -0.46
HDAC1-206ENST00000476391 IFI6P09912 130 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 CEBPBP17676 345 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 BCKDHBP21953 392 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 CTHP32929 405 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 FAM189A2Q15884 450 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 FAM110CQ1W6H9 321 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 DEGS2Q6QHC5 323 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 DPPA3Q6W0C5 159 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 PARS2Q7L3T8 475 aaKnown RBP12.18□□□□□ -0.46
HDAC1-206ENST00000476391 RTN4RL2Q86UN3 420 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 C10orf53Q8N6V4 93 aa12.18□□□□□ -0.46
HDAC1-206ENST00000476391 SLC24A4Q8NFF2 622 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms