RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 HLXQ14774 488 aaPredicted RBP13.54□□□□□ -0.24
CCDC40-202ENST00000374876 LIN54Q6MZP7 749 aa13.54□□□□□ -0.24
CCDC40-202ENST00000374876 SLC25A42Q86VD7 318 aa13.54□□□□□ -0.24
CCDC40-202ENST00000374876 COMMD7Q86VX2 200 aa13.54□□□□□ -0.24
CCDC40-202ENST00000374876 ZDHHC22Q8N966 263 aa13.54□□□□□ -0.24
CCDC40-202ENST00000374876 OR56B1Q8NGI3 324 aa13.54□□□□□ -0.24
CCDC40-202ENST00000374876 ANGPTL6Q8NI99 470 aa13.54□□□□□ -0.24
CCDC40-202ENST00000374876 PRR7Q8TB68 274 aa13.54□□□□□ -0.24
CCDC40-202ENST00000374876 SPTSSAQ969W0 71 aa13.54□□□□□ -0.24
CCDC40-202ENST00000374876 LYZL4Q96KX0 146 aa13.54□□□□□ -0.24
CCDC40-202ENST00000374876 URM1Q9BTM9 101 aaKnown RBP13.54□□□□□ -0.24
CCDC40-202ENST00000374876 SF3B5Q9BWJ5 86 aaKnown RBP13.54□□□□□ -0.24
CCDC40-202ENST00000374876 ARL6Q9H0F7 186 aa13.54□□□□□ -0.24
CCDC40-202ENST00000374876 PLEK2Q9NYT0 353 aa13.54□□□□□ -0.24
CCDC40-202ENST00000374876 ESPL1Q14674 2120 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 SMAD9O15198 467 aaKnown RBP13.53□□□□□ -0.24
CCDC40-202ENST00000374876 SOCS1O15524 211 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 DHRS3O75911 302 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 IGLV3-1P01715 115 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 HPNP05981 417 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 HIST1H1DP16402 221 aaKnown RBP13.53□□□□□ -0.24
CCDC40-202ENST00000374876 THBS4P35443 961 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 HIST1H3AP68431 136 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 KISS1Q15726 138 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 LY6G6FQ5SQ64 297 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 HIST2H3PS2Q5TEC6 136 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 LPCAT3Q6P1A2 487 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 HIST2H3AQ71DI3 136 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 RTN4RL2Q86UN3 420 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 C20orf196Q8IYI0 205 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 OR4K15Q8NH41 348 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 ZNF775Q96BV0 537 aaPredicted RBP13.53□□□□□ -0.24
CCDC40-202ENST00000374876 CST11Q9H112 138 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 ACKR4Q9NPB9 350 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 PLSCR2Q9NRY7 297 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 OSGIN2Q9Y236 505 aa13.53□□□□□ -0.24
CCDC40-202ENST00000374876 TRGV5A0A0B4J1U4 118 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 TUBAL3A6NHL2 446 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 J3QKU1 62 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 M0R135 149 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 IGHG3P01860 377 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 PMP2P02689 132 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 PPP3CBP16298 524 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 CARD18P57730 90 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 B3GALT5-AS1P59052 145 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 NHLRC3Q5JS37 347 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 PLAC9Q5JTB6 97 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 SFRP5Q5T4F7 317 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 LYG2Q86SG7 212 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 OR5M8Q8NGP6 311 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 SSC4DQ8WTU2 575 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 NPRL2Q8WTW4 380 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 MRGPRFQ96AM1 343 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 ZNF799Q96GE5 643 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 V9GYS6 101 aa13.52□□□□□ -0.24
CCDC40-202ENST00000374876 A0A1W2PP11 408 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 RFPL4AA6NLU0 287 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 RFPL4AL1F8VTS6 287 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 MTRF1O75570 445 aaKnown RBP13.52□□□□□ -0.25
CCDC40-202ENST00000374876 PRF1P14222 555 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 OTX1P32242 354 aaPredicted RBP13.52□□□□□ -0.25
CCDC40-202ENST00000374876 MRPS34P82930 218 aaKnown RBP13.52□□□□□ -0.25
CCDC40-202ENST00000374876 FGL1Q08830 312 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 DMRTC1Q5HYR2 192 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 TOR2AQ5JU69 321 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 FAM27BQ5VT28 67 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 CCDC28AQ8IWP9 274 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 OR5D18Q8NGL1 313 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 PP6455Q8WZ26 134 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 FBXO17Q96EF6 278 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 ZNF837Q96EG3 531 aaPredicted RBP13.52□□□□□ -0.25
CCDC40-202ENST00000374876 PDCD10Q9BUL8 212 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 MFFQ9GZY8 342 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 OR10A2Q9H208 303 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 SPRR3Q9UBC9 169 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 GHRLQ9UBU3 117 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 KIF25Q9UIL4 384 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 SH3BGRL2Q9UJC5 107 aa13.52□□□□□ -0.25
CCDC40-202ENST00000374876 OR2AT4A6NND4 320 aa13.51□□□□□ -0.25
CCDC40-202ENST00000374876 DBHP09172 617 aa13.51□□□□□ -0.25
CCDC40-202ENST00000374876 RPA2P15927 270 aa13.51□□□□□ -0.25
CCDC40-202ENST00000374876 FAHP16930 419 aa13.51□□□□□ -0.25
CCDC40-202ENST00000374876 ZBTB25P24278 435 aa13.51□□□□□ -0.25
CCDC40-202ENST00000374876 PTGFRP43088 359 aa13.51□□□□□ -0.25
CCDC40-202ENST00000374876 IL13RA1P78552 427 aa13.51□□□□□ -0.25
CCDC40-202ENST00000374876 PPP1R1AQ13522 171 aa13.51□□□□□ -0.25
CCDC40-202ENST00000374876 PNLIPRP3Q17RR3 467 aa13.51□□□□□ -0.25
CCDC40-202ENST00000374876 RSPO1Q2MKA7 263 aaPredicted RBP13.51□□□□□ -0.25
CCDC40-202ENST00000374876 GSG1LQ6UXU4 331 aa13.51□□□□□ -0.25
CCDC40-202ENST00000374876 OR51T1Q8NGJ9 327 aa13.51□□□□□ -0.25
CCDC40-202ENST00000374876 ZNF230Q9UIE0 474 aaPredicted RBP13.51□□□□□ -0.25
CCDC40-202ENST00000374876 PIGLQ9Y2B2 252 aa13.51□□□□□ -0.25
CCDC40-202ENST00000374876 C9orf170A2RU37 121 aa13.51□□□□□ -0.25
CCDC40-202ENST00000374876 RRASP10301 218 aa13.51□□□□□ -0.25
CCDC40-202ENST00000374876 TMEM50BP56557 158 aa13.51□□□□□ -0.25
CCDC40-202ENST00000374876 ARFRP1Q13795 201 aa13.51□□□□□ -0.25
CCDC40-202ENST00000374876 GK2Q14410 553 aaPredicted RBP13.51□□□□□ -0.25
CCDC40-202ENST00000374876 UBE2V2Q15819 145 aa13.51□□□□□ -0.25
CCDC40-202ENST00000374876 FAHD2BQ6P2I3 314 aaPredicted RBP13.51□□□□□ -0.25
CCDC40-202ENST00000374876 GGNQ86UU5 652 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms