RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 IFNA2P01563 188 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 IGLV3-19P01714 112 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 GAPDHP04406 335 aaKnown RBP15.47■□□□□ 0.07
SYNE3-202ENST00000553340 ZNF17P17021 662 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 SUMO3P55854 103 aaPredicted RBP15.47■□□□□ 0.07
SYNE3-202ENST00000553340 FBXW4P57775 412 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 RNF4P78317 190 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 GABREP78334 506 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 FOXF1Q12946 379 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 CHRFAM7AQ494W8 412 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 OR2A2Q6IF42 318 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 LANCL3Q6ZV70 420 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 C7orf61Q8IZ16 206 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 CLCC1Q96S66 551 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.47■□□□□ 0.07
SYNE3-202ENST00000553340 SLC22A11Q9NSA0 550 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 ZNF319Q9P2F9 582 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 B3GAT1Q9P2W7 334 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 CACFD1Q9UGQ2 172 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 CD207Q9UJ71 328 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 TIMM10BQ9Y5J6 103 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 S100A8P05109 93 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 S100A6P06703 90 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 CPT2P23786 658 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 DOK3Q7L591 496 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 OR1L3Q8NH93 324 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 DUSP15Q9H1R2 295 aaPredicted RBP15.47■□□□□ 0.07
SYNE3-202ENST00000553340 S100A9P06702 114 aaKnown RBP15.47■□□□□ 0.07
SYNE3-202ENST00000553340 SMIM6P0DI80 62 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 FCGR2CP31995 323 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 C1orf189Q5VU69 101 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 GALNTL5Q7Z4T8 443 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 UEVLDQ8IX04 471 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 MAFIPQ8WZ33 124 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 RAB33BQ9H082 229 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 RPS10P5Q9NQ39 176 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 FBXL17Q9UF56 701 aa15.47■□□□□ 0.07
SYNE3-202ENST00000553340 MYO9BQ13459 2157 aa15.46■□□□□ 0.07
SYNE3-202ENST00000553340 IGHG1P01857 330 aa15.46■□□□□ 0.07
SYNE3-202ENST00000553340 OR8U9P0C7N5 309 aa15.46■□□□□ 0.07
SYNE3-202ENST00000553340 NME1P15531 152 aaKnown RBP15.46■□□□□ 0.07
SYNE3-202ENST00000553340 CCL1P22362 96 aa15.46■□□□□ 0.07
SYNE3-202ENST00000553340 BLVRBP30043 206 aaPredicted RBP15.46■□□□□ 0.07
SYNE3-202ENST00000553340 CDAP32320 146 aa15.46■□□□□ 0.07
SYNE3-202ENST00000553340 ID4P47928 161 aa15.46■□□□□ 0.07
SYNE3-202ENST00000553340 RNF212Q495C1 297 aa15.46■□□□□ 0.07
SYNE3-202ENST00000553340 OPN5Q6U736 354 aa15.46■□□□□ 0.07
SYNE3-202ENST00000553340 NOXO1Q8NFA2 376 aa15.46■□□□□ 0.07
SYNE3-202ENST00000553340 OR8U1Q8NH10 309 aa15.46■□□□□ 0.07
SYNE3-202ENST00000553340 FNDC9Q8TBE3 224 aa15.46■□□□□ 0.07
SYNE3-202ENST00000553340 PLA2G2EQ9NZK7 142 aa15.46■□□□□ 0.07
SYNE3-202ENST00000553340 GHRLQ9UBU3 117 aa15.46■□□□□ 0.07
SYNE3-202ENST00000553340 IGKV1-9A0A0C4DH69 117 aa15.46■□□□□ 0.06
SYNE3-202ENST00000553340 EPOPA6NHQ4 379 aa15.46■□□□□ 0.06
SYNE3-202ENST00000553340 LINC01387J3KSC0 135 aa15.46■□□□□ 0.06
SYNE3-202ENST00000553340 GLAP06280 429 aa15.46■□□□□ 0.06
SYNE3-202ENST00000553340 PTGER4P35408 488 aa15.46■□□□□ 0.06
SYNE3-202ENST00000553340 PPT1P50897 306 aa15.46■□□□□ 0.06
SYNE3-202ENST00000553340 FAM3AP98173 230 aa15.46■□□□□ 0.06
SYNE3-202ENST00000553340 SPEM2Q0P670 501 aa15.46■□□□□ 0.06
SYNE3-202ENST00000553340 ETV3LQ6ZN32 361 aa15.46■□□□□ 0.06
SYNE3-202ENST00000553340 FAM57BQ71RH2 274 aa15.46■□□□□ 0.06
SYNE3-202ENST00000553340 OR9K2Q8NGE7 335 aa15.46■□□□□ 0.06
SYNE3-202ENST00000553340 LYPD6BQ8NI32 183 aa15.46■□□□□ 0.06
SYNE3-202ENST00000553340 NANPQ8TBE9 248 aa15.46■□□□□ 0.06
SYNE3-202ENST00000553340 SSC4DQ8WTU2 575 aa15.46■□□□□ 0.06
SYNE3-202ENST00000553340 SECTM1Q8WVN6 248 aa15.46■□□□□ 0.06
SYNE3-202ENST00000553340 HIST1H2BAQ96A08 127 aa15.46■□□□□ 0.06
SYNE3-202ENST00000553340 C5orf52A6NGY3 159 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 SHISA8B8ZZ34 492 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 TMEM33P57088 247 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 EIF2S3LQ2VIR3 472 aaKnown RBP15.45■□□□□ 0.06
SYNE3-202ENST00000553340 ZNF283Q8N7M2 679 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 OR5D18Q8NGL1 313 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 PRRX2Q99811 253 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 PECRQ9BY49 303 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 IGHV3-20A0A0C4DH32 117 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 RHPN2P1A8MT19 583 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 SERPINE3A8MV23 424 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 RER1O15258 196 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 DEDDO75618 318 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 IFNA21P01568 189 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 MT-ND4LP03901 98 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 ZNF806P0C7X5 589 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 PGA4P0DJD7 388 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 PGA3P0DJD8 388 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 ECI1P42126 302 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 AKR1C3P42330 323 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 MYBPHQ13203 477 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 MFAP5Q13361 173 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 KISS1Q15726 138 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 DEFB133Q30KQ1 61 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 FBXO46Q6PJ61 603 aaPredicted RBP15.45■□□□□ 0.06
SYNE3-202ENST00000553340 C17orf82Q86X59 251 aaPredicted RBP15.45■□□□□ 0.06
SYNE3-202ENST00000553340 SGPP2Q8IWX5 399 aa15.45■□□□□ 0.06
SYNE3-202ENST00000553340 SGCEO43556 437 aa15.44■□□□□ 0.06
SYNE3-202ENST00000553340 TSPAN15O95858 294 aa15.44■□□□□ 0.06
SYNE3-202ENST00000553340 HPNP05981 417 aa15.44■□□□□ 0.06
SYNE3-202ENST00000553340 FOSL2P15408 326 aa15.44■□□□□ 0.06
SYNE3-202ENST00000553340 ZNF84P51523 738 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms