RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 CPNE4Q96A23 557 aaPredicted RBP3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 SLC25A44Q96H78 314 aaPredicted RBP3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 CEP19Q96LK0 163 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 KCTD7Q96MP8 289 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 DACH2Q96NX9 599 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 FOXN4Q96NZ1 517 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 TSSK2Q96PF2 358 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 COQ7Q99807 217 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 CENPOQ9BU64 300 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 EMC6Q9BV81 110 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 SRXN1Q9BYN0 137 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 ULBP2Q9BZM5 246 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 NMNAT2Q9BZQ4 307 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 C6orf62Q9GZU0 229 aaPredicted RBP3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 COMMD4Q9H0A8 199 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 MMP28Q9H239 520 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 ISG20L2Q9H9L3 353 aaKnown RBP3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 FANCFQ9NPI8 374 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 B3GAT2Q9NPZ5 323 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 ACOXLQ9NUZ1 547 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 PAQR5Q9NXK6 330 aaPredicted RBP3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 BABAM2Q9NXR7 383 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 QPCTLQ9NXS2 382 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 CRNNQ9UBG3 495 aaPredicted RBP3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 POU2F3Q9UKI9 436 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 MCTS1Q9ULC4 181 aaKnown RBP3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 COPS3Q9UNS2 423 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 B9D1Q9UPM9 204 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 CAMK2AQ9UQM7 478 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 MRPS18CQ9Y3D5 142 aaKnown RBP3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 GRIP1Q9Y3R0 1128 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 TNRC6AQ8NDV7 1962 aaKnown RBP3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 COL6A3P12111 3177 aa3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 SPTBN5Q9NRC6 3674 aaKnown RBP3.3□□□□□ -1.88
HMGB3P20-201ENST00000417997 ARHGAP21Q5T5U3 1957 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 TRIOO75962 3097 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 TRGV5A0A0B4J1U4 118 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 TRAV17A0A0B4J275 112 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 TRDV1A0A1B0GX56 115 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 SMIM30A4D0T7 59 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 FAM172BPA6NC97 362 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 METTL15A6NJ78 407 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 ZNF878C9JN71 531 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 LOC110117498-PIK3R3F6TDL0 507 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 J3QRE1 110 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 P2RY10O00398 339 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 DCTN6O00399 190 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 ZNF593O00488 134 aaPredicted RBP3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 GABRPO00591 440 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 SMAD9O15198 467 aaKnown RBP3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 RGS5O15539 181 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 RRP8O43159 456 aaKnown RBP3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 GPRIN2O60269 458 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 RAMP1O60894 148 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 ARL6IP5O75915 188 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 KRT33AO76009 404 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 CDRT1O95170 752 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 ACTL6AO96019 429 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 LALBAP00709 142 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 H2BFMP0C1H6 154 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 ZNF24P17028 368 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 KLK2P20151 261 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 GALP22466 123 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 HSD11B1P28845 292 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 PSMB10P40306 273 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 EIF2S3P41091 472 aaKnown RBP3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 RPS27P42677 84 aaKnown RBP3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 TGM4P49221 684 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 STARP49675 285 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 TNFSF10P50591 281 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 RORCP51449 518 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 FUT6P51993 359 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 HCCSP53701 268 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 CLDN15P56746 228 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 CARD18P57730 90 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 BRWD1-AS2P59051 145 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 B3GALT5-AS1P59052 145 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 PMP22Q01453 160 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 FABP5Q01469 135 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 SRYQ05066 204 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 RASGEF1BQ0VAM2 473 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 GPR50Q13585 617 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 ZNF846Q147U1 533 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 SLC10A1Q14973 349 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 TAF13Q15543 124 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 INAQ16352 499 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 MEP1BQ16820 701 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 ZNF829Q3KNS6 432 aaPredicted RBP3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 ZNF404Q494X3 552 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 CCDC58Q4VC31 144 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 SOWAHCQ53LP3 525 aaPredicted RBP3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 THEM4Q5T1C6 240 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 OR7E24Q6IFN5 339 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 RPL22L1Q6P5R6 122 aaKnown RBP3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 PAMR1Q6UXH9 720 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 LRRN1Q6UXK5 716 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 FCRLAQ7L513 359 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 AAED1Q7RTV5 226 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 P4HA3Q7Z4N8 544 aa3.29□□□□□ -1.88
HMGB3P20-201ENST00000417997 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms