RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 RNF126Q9BV68 326 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 SLC6A15Q9H2J7 730 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 SHPKQ9UHJ6 478 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 ADAMTS20P59510 1910 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 FAM74A7A6NL05 159 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 RAMP1O60894 148 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 PI3P19957 117 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 NAAAQ02083 359 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 FAM74A3Q4VXF1 159 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 ZSCAN4Q8NAM6 433 aaPredicted RBP16.51■□□□□ 0.23
CPSF3-201ENST00000238112 SLC30A7Q8NEW0 376 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 PGAM5Q96HS1 289 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 ST6GALNAC5Q9BVH7 336 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 RARRES3Q9UL19 164 aa16.51■□□□□ 0.23
CPSF3-201ENST00000238112 IGKV1-9A0A0C4DH69 117 aa16.5■□□□□ 0.23
CPSF3-201ENST00000238112 FGF16O43320 207 aa16.5■□□□□ 0.23
CPSF3-201ENST00000238112 ADAP1O75689 374 aa16.5■□□□□ 0.23
CPSF3-201ENST00000238112 ATG12O94817 140 aa16.5■□□□□ 0.23
CPSF3-201ENST00000238112 GUCA1AP43080 201 aaPredicted RBP16.5■□□□□ 0.23
CPSF3-201ENST00000238112 HIST3H3Q16695 136 aa16.5■□□□□ 0.23
CPSF3-201ENST00000238112 OR5D18Q8NGL1 313 aa16.5■□□□□ 0.23
CPSF3-201ENST00000238112 OR14K1Q8NGZ2 314 aa16.5■□□□□ 0.23
CPSF3-201ENST00000238112 RNF141Q8WVD5 230 aa16.5■□□□□ 0.23
CPSF3-201ENST00000238112 DNASE2BQ8WZ79 361 aa16.5■□□□□ 0.23
CPSF3-201ENST00000238112 ZC3H10Q96K80 434 aaKnown RBP16.5■□□□□ 0.23
CPSF3-201ENST00000238112 TSNAXQ99598 290 aaKnown RBP16.5■□□□□ 0.23
CPSF3-201ENST00000238112 ZNF416Q9BWM5 594 aa16.5■□□□□ 0.23
CPSF3-201ENST00000238112 ADAMTS9Q9P2N4 1935 aa16.5■□□□□ 0.23
CPSF3-201ENST00000238112 HDGFL3Q9Y3E1 203 aa16.5■□□□□ 0.23
CPSF3-201ENST00000238112 B3GALT1Q9Y5Z6 326 aa16.5■□□□□ 0.23
CPSF3-201ENST00000238112 AQP7P3A6NL99 342 aa16.5■□□□□ 0.23
CPSF3-201ENST00000238112 DHPSP49366 369 aaPredicted RBP16.5■□□□□ 0.23
CPSF3-201ENST00000238112 PDSS1Q5T2R2 415 aa16.5■□□□□ 0.23
CPSF3-201ENST00000238112 ROBO4Q8WZ75 1007 aa16.5■□□□□ 0.23
CPSF3-201ENST00000238112 SPACA9Q96E40 222 aaPredicted RBP16.5■□□□□ 0.23
CPSF3-201ENST00000238112 RRNAD1Q96FB5 475 aaKnown RBP16.5■□□□□ 0.23
CPSF3-201ENST00000238112 DEFB126Q9BYW3 111 aa16.5■□□□□ 0.23
CPSF3-201ENST00000238112 METTL8Q9H825 291 aaKnown RBP16.5■□□□□ 0.23
CPSF3-201ENST00000238112 PCDHB16Q9NRJ7 776 aa16.5■□□□□ 0.23
CPSF3-201ENST00000238112 C19orf25Q9UFG5 118 aaPredicted RBP16.5■□□□□ 0.23
CPSF3-201ENST00000238112 RALGAPA1Q6GYQ0 2036 aa16.49■□□□□ 0.23
CPSF3-201ENST00000238112 TMEM218A2RU14 115 aa16.49■□□□□ 0.23
CPSF3-201ENST00000238112 H0YIZ8 118 aa16.49■□□□□ 0.23
CPSF3-201ENST00000238112 HTR3BO95264 441 aa16.49■□□□□ 0.23
CPSF3-201ENST00000238112 EIF1P41567 113 aaKnown RBP16.49■□□□□ 0.23
CPSF3-201ENST00000238112 CLDN17P56750 224 aa16.49■□□□□ 0.23
CPSF3-201ENST00000238112 TAS2R46P59540 309 aa16.49■□□□□ 0.23
CPSF3-201ENST00000238112 CSNK2A1P68400 391 aaPredicted RBP16.49■□□□□ 0.23
CPSF3-201ENST00000238112 ECH1Q13011 328 aa16.49■□□□□ 0.23
CPSF3-201ENST00000238112 KISS1Q15726 138 aa16.49■□□□□ 0.23
CPSF3-201ENST00000238112 DMRTC1Q5HYR2 192 aa16.49■□□□□ 0.23
CPSF3-201ENST00000238112 NKAPLQ5M9Q1 402 aa16.49■□□□□ 0.23
CPSF3-201ENST00000238112 PEG10Q86TG7 708 aaKnown RBP16.49■□□□□ 0.23
CPSF3-201ENST00000238112 CSNK2A3Q8NEV1 391 aa16.49■□□□□ 0.23
CPSF3-201ENST00000238112 NPRL2Q8WTW4 380 aa16.49■□□□□ 0.23
CPSF3-201ENST00000238112 RASL10BQ96S79 203 aa16.49■□□□□ 0.23
CPSF3-201ENST00000238112 PRR13Q9NZ81 148 aa16.49■□□□□ 0.23
CPSF3-201ENST00000238112 PRUNE2Q8WUY3 3088 aa16.49■□□□□ 0.23
CPSF3-201ENST00000238112 NR2C1P13056 603 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 KLK2P20151 261 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 SNU13P55769 128 aaKnown RBP16.48■□□□□ 0.23
CPSF3-201ENST00000238112 SLC35A1P78382 337 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 PRSS54Q6PEW0 395 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 Q7L0L9 218 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 OR13G1Q8NGZ3 307 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 SSC4DQ8WTU2 575 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 ARL11Q969Q4 196 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 CYYR1Q96J86 154 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 MICU1Q9BPX6 476 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 RTBDNQ9BSG5 229 aaPredicted RBP16.48■□□□□ 0.23
CPSF3-201ENST00000238112 ZNF160Q9HCG1 818 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 EHFQ9NZC4 300 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 GHRLQ9UBU3 117 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 SDCBPO00560 298 aaPredicted RBP16.48■□□□□ 0.23
CPSF3-201ENST00000238112 FKBP2P26885 142 aaKnown RBP16.48■□□□□ 0.23
CPSF3-201ENST00000238112 PTGFRP43088 359 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 SLC6A9P48067 706 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 AKR1C2P52895 323 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 SUPT4H1P63272 117 aaKnown RBP16.48■□□□□ 0.23
CPSF3-201ENST00000238112 AKR1C1Q04828 323 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 ANKRD55Q3KP44 614 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 SVBPQ8N300 66 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 WDSUB1Q8N9V3 476 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 OR5T2Q8NGG2 359 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 TMED6Q8WW62 240 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 SPSB2Q99619 263 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 TMEM100Q9NV29 134 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 SDK1Q7Z5N4 2213 aa16.48■□□□□ 0.23
CPSF3-201ENST00000238112 PRF1P14222 555 aa16.47■□□□□ 0.23
CPSF3-201ENST00000238112 IL32P24001 234 aa16.47■□□□□ 0.23
CPSF3-201ENST00000238112 ADH6P28332 368 aa16.47■□□□□ 0.23
CPSF3-201ENST00000238112 ZNF239Q16600 458 aaKnown RBP16.47■□□□□ 0.23
CPSF3-201ENST00000238112 PRAMEF20Q5VT98 475 aa16.47■□□□□ 0.23
CPSF3-201ENST00000238112 LHFPL1Q86WI0 220 aa16.47■□□□□ 0.23
CPSF3-201ENST00000238112 FAM89BQ8N5H3 189 aa16.47■□□□□ 0.23
CPSF3-201ENST00000238112 LIN37Q96GY3 246 aaPredicted RBP16.47■□□□□ 0.23
CPSF3-201ENST00000238112 S100A13Q99584 98 aa16.47■□□□□ 0.23
CPSF3-201ENST00000238112 CYTL1Q9NRR1 136 aa16.47■□□□□ 0.23
CPSF3-201ENST00000238112 CABIN1Q9Y6J0 2220 aa16.47■□□□□ 0.23
CPSF3-201ENST00000238112 LOC102725191A0A1B0GVB3 256 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms