RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USA1	YML029W	HOP2	P53187	214 aa		4.14	□□□□□ -1.75
USA1	YML029W	ERG5	P54781	538 aa		4.14	□□□□□ -1.75
USA1	YML029W	STP1	Q00947	519 aa		4.14	□□□□□ -1.75
USA1	YML029W	RCR2	Q03446	210 aa	Known RBP	4.14	□□□□□ -1.75
USA1	YML029W	VPS38	Q05919	439 aa		4.14	□□□□□ -1.75
USA1	YML029W	AHC1	Q12433	566 aa		4.14	□□□□□ -1.75
USA1	YML029W	TPK1	P06244	397 aa		4.13	□□□□□ -1.75
USA1	YML029W	TUP1	P16649	713 aa		4.13	□□□□□ -1.75
USA1	YML029W	EST1	P17214	699 aa	Predicted RBP	4.13	□□□□□ -1.75
USA1	YML029W	PRR1	P28708	518 aa		4.13	□□□□□ -1.75
USA1	YML029W	XRS2	P33301	854 aa		4.13	□□□□□ -1.75
USA1	YML029W	DYS1	P38791	387 aa		4.13	□□□□□ -1.75
USA1	YML029W	SPC72	P39723	622 aa		4.13	□□□□□ -1.75
USA1	YML029W	SIP5	P40210	489 aa	Known RBP	4.13	□□□□□ -1.75
USA1	YML029W	ATG3	P40344	310 aa		4.13	□□□□□ -1.75
USA1	YML029W	PHO86	P46956	311 aa		4.13	□□□□□ -1.75
USA1	YML029W	MND1	P53102	219 aa		4.13	□□□□□ -1.75
USA1	YML029W	YGR021W	P53212	290 aa		4.13	□□□□□ -1.75
USA1	YML029W	YNL115C	P53925	644 aa		4.13	□□□□□ -1.75
USA1	YML029W	ESC2	Q06340	456 aa		4.13	□□□□□ -1.75
USA1	YML029W	PKH2	Q12236	1081 aa	Known RBP	4.13	□□□□□ -1.75
USA1	YML029W	YBL113C	Q7M4S9	792 aa		4.13	□□□□□ -1.75
USA1	YML029W	ADE3	P07245	946 aa	Known RBP	4.13	□□□□□ -1.75
USA1	YML029W	RRP43	P25359	394 aa	Predicted RBP	4.13	□□□□□ -1.75
USA1	YML029W	PEP7	P32609	515 aa		4.13	□□□□□ -1.75
USA1	YML029W	SMC1	P32908	1225 aa		4.13	□□□□□ -1.75
USA1	YML029W	NIP100	P33420	868 aa		4.13	□□□□□ -1.75
USA1	YML029W	RIM4	P38741	713 aa		4.13	□□□□□ -1.75
USA1	YML029W	CCC2	P38995	1004 aa		4.13	□□□□□ -1.75
USA1	YML029W	OYE3	P41816	400 aa	Predicted RBP	4.13	□□□□□ -1.75
USA1	YML029W	IES1	P43579	692 aa		4.13	□□□□□ -1.75
USA1	YML029W	OSW7	P43611	510 aa		4.13	□□□□□ -1.75
USA1	YML029W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
USA1	YML029W	MRX6	P48564	524 aa		4.13	□□□□□ -1.75
USA1	YML029W	RIM21	P48565	533 aa		4.13	□□□□□ -1.75
USA1	YML029W	NUT1	P53114	1132 aa		4.13	□□□□□ -1.75
USA1	YML029W	HST2	P53686	357 aa		4.13	□□□□□ -1.75
USA1	YML029W	MZM1	Q03429	123 aa	Predicted RBP	4.13	□□□□□ -1.75
USA1	YML029W	RGA2	Q06407	1009 aa		4.13	□□□□□ -1.75
USA1	YML029W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
USA1	YML029W	YPR027C	Q12079	277 aa		4.13	□□□□□ -1.75
USA1	YML029W	SLX4	Q12098	748 aa		4.13	□□□□□ -1.75
USA1	YML029W	ZPS1	Q12512	249 aa		4.13	□□□□□ -1.75
USA1	YML029W	ECM3	Q99252	613 aa		4.13	□□□□□ -1.75
USA1	YML029W	MTF2	P10849	440 aa		4.12	□□□□□ -1.75
USA1	YML029W	RNR1	P21524	888 aa	Known RBP	4.12	□□□□□ -1.75
USA1	YML029W	PDC6	P26263	563 aa	Known RBP	4.12	□□□□□ -1.75
USA1	YML029W	RAD27	P26793	382 aa		4.12	□□□□□ -1.75
USA1	YML029W	TSA1	P34760	196 aa	Known RBP	4.12	□□□□□ -1.75
USA1	YML029W	CCL1	P37366	393 aa		4.12	□□□□□ -1.75
USA1	YML029W	INP51	P40559	946 aa	Known RBP	4.12	□□□□□ -1.75
USA1	YML029W	SAD1	P43589	448 aa		4.12	□□□□□ -1.75
USA1	YML029W	TAD1	P53065	400 aa		4.12	□□□□□ -1.75
USA1	YML029W	PUS2	P53167	370 aa		4.12	□□□□□ -1.75
USA1	YML029W	DRN1	P53255	507 aa	Known RBP	4.12	□□□□□ -1.75
USA1	YML029W	YNL034W	P53963	612 aa		4.12	□□□□□ -1.75
USA1	YML029W	YNL018C	P53976	612 aa		4.12	□□□□□ -1.75
USA1	YML029W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.12	□□□□□ -1.75	not detected
USA1	YML029W	ABP140	Q08641	628 aa	Known RBP	4.12	□□□□□ -1.75
USA1	YML029W	CDC33	P07260	213 aa	Known RBP	4.12	□□□□□ -1.75
USA1	YML029W	HMG2	P12684	1045 aa		4.12	□□□□□ -1.75
USA1	YML029W	YPK1	P12688	680 aa	Known RBP	4.12	□□□□□ -1.75
USA1	YML029W	RDS2	P19541	446 aa	Known RBP	4.12	□□□□□ -1.75
USA1	YML029W	AEP2	P22136	580 aa		4.12	□□□□□ -1.75
USA1	YML029W	PGS1	P25578	521 aa		4.12	□□□□□ -1.75
USA1	YML029W	ADK2	P26364	225 aa		4.12	□□□□□ -1.75
USA1	YML029W	PEP12	P32854	288 aa		4.12	□□□□□ -1.75
USA1	YML029W	CSE2	P33308	149 aa		4.12	□□□□□ -1.75
USA1	YML029W	TKL2	P33315	681 aa		4.12	□□□□□ -1.75
USA1	YML029W	HEL1	P36113	551 aa		4.12	□□□□□ -1.75
USA1	YML029W	MAP2	P38174	421 aa	Known RBP	4.12	□□□□□ -1.75
USA1	YML029W	TGL3	P40308	642 aa		4.12	□□□□□ -1.75
USA1	YML029W	TPO2	P53283	614 aa		4.12	□□□□□ -1.75
USA1	YML029W	YNL247W	P53852	767 aa	Known RBP	4.12	□□□□□ -1.75
USA1	YML029W	EEB1	Q02891	456 aa		4.12	□□□□□ -1.75
USA1	YML029W	YOR238W	Q08634	303 aa		4.12	□□□□□ -1.75
USA1	YML029W	TRE1	Q08919	783 aa		4.12	□□□□□ -1.75
USA1	YML029W	WHI5	Q12416	295 aa		4.12	□□□□□ -1.75
USA1	YML029W	YOL098C	Q12496	1037 aa		4.12	□□□□□ -1.75
USA1	YML029W	JIP3	O13555	125 aa		4.11	□□□□□ -1.75
USA1	YML029W	CHS1	P08004	1131 aa		4.11	□□□□□ -1.75
USA1	YML029W	PUT4	P15380	627 aa		4.11	□□□□□ -1.75
USA1	YML029W	GAC1	P28006	793 aa		4.11	□□□□□ -1.75
USA1	YML029W	STO1	P34160	861 aa	Known RBP	4.11	□□□□□ -1.75
USA1	YML029W	BLI1	P35727	113 aa		4.11	□□□□□ -1.75
USA1	YML029W	RFS1	P38234	210 aa	Known RBP	4.11	□□□□□ -1.75
USA1	YML029W	KIC1	P38692	1080 aa		4.11	□□□□□ -1.75
USA1	YML029W	TDA3	P38758	523 aa		4.11	□□□□□ -1.75
USA1	YML029W	MMM1	P41800	426 aa		4.11	□□□□□ -1.75
USA1	YML029W	PSP1	P50896	841 aa	Known RBP	4.11	□□□□□ -1.75
USA1	YML029W	YGL036W	P53185	909 aa	Predicted RBP	4.11	□□□□□ -1.75
USA1	YML029W	TBF1	Q02457	562 aa		4.11	□□□□□ -1.75
USA1	YML029W	YMR018W	Q04364	514 aa		4.11	□□□□□ -1.75
USA1	YML029W	TRP2	P00899	507 aa	Known RBP	4.11	□□□□□ -1.75
USA1	YML029W	CKI1	P20485	582 aa		4.11	□□□□□ -1.75
USA1	YML029W	RAD57	P25301	460 aa		4.11	□□□□□ -1.75
USA1	YML029W	EFB1	P32471	206 aa	Known RBP	4.11	□□□□□ -1.75
USA1	YML029W	SRB4	P32569	687 aa		4.11	□□□□□ -1.75
USA1	YML029W	ABD1	P32783	436 aa	Predicted RBP	4.11	□□□□□ -1.75
USA1	YML029W	FRE1	P32791	686 aa		4.11	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 43.4 ms