RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 HAND2P61296 217 aa17.53■□□□□ 0.4
CLN3-253ENST00000636977 RBM43Q6ZSC3 357 aaKnown RBP17.53■□□□□ 0.4
CLN3-253ENST00000636977 HELLSQ9NRZ9 838 aa17.53■□□□□ 0.4
CLN3-253ENST00000636977 DDX19AQ9NUU7 478 aaKnown RBP17.53■□□□□ 0.4
CLN3-253ENST00000636977 LRMPQ12912 555 aa17.53■□□□□ 0.4
CLN3-253ENST00000636977 PI16Q6UXB8 463 aa17.53■□□□□ 0.4
CLN3-253ENST00000636977 GOLPH3LQ9H4A5 285 aa17.53■□□□□ 0.4
CLN3-253ENST00000636977 DYNC1I1O14576 645 aa17.52■□□□□ 0.4
CLN3-253ENST00000636977 SCARF1Q14162 830 aa17.52■□□□□ 0.4
CLN3-253ENST00000636977 RAB11FIP4Q86YS3 637 aa17.52■□□□□ 0.4
CLN3-253ENST00000636977 SYNE4Q8N205 404 aa17.52■□□□□ 0.4
CLN3-253ENST00000636977 ERCC4Q92889 916 aaPredicted RBP17.52■□□□□ 0.4
CLN3-253ENST00000636977 DSCC1Q9BVC3 393 aa17.52■□□□□ 0.4
CLN3-253ENST00000636977 TJP1Q07157 1748 aa17.52■□□□□ 0.4
CLN3-253ENST00000636977 VGLL3A8MV65 326 aa17.52■□□□□ 0.4
CLN3-253ENST00000636977 FOXP2O15409 715 aa17.52■□□□□ 0.4
CLN3-253ENST00000636977 USP28Q96RU2 1077 aa17.52■□□□□ 0.4
CLN3-253ENST00000636977 RNF113AO15541 343 aaKnown RBP17.52■□□□□ 0.39
CLN3-253ENST00000636977 OTUD7BQ6GQQ9 843 aa17.52■□□□□ 0.39
CLN3-253ENST00000636977 ILDR1Q86SU0 546 aaPredicted RBP17.52■□□□□ 0.39
CLN3-253ENST00000636977 MYRIPQ8NFW9 859 aa17.52■□□□□ 0.39
CLN3-253ENST00000636977 PRDM11Q9NQV5 511 aa17.52■□□□□ 0.39
CLN3-253ENST00000636977 PDIA3P30101 505 aaKnown RBP17.51■□□□□ 0.39
CLN3-253ENST00000636977 LAMB4A4D0S4 1761 aa17.51■□□□□ 0.39
CLN3-253ENST00000636977 ZNF165P49910 485 aa17.51■□□□□ 0.39
CLN3-253ENST00000636977 CCDC186Q7Z3E2 898 aa17.51■□□□□ 0.39
CLN3-253ENST00000636977 SMAP1Q8IYB5 467 aaPredicted RBP17.51■□□□□ 0.39
CLN3-253ENST00000636977 PLCD3Q8N3E9 789 aa17.5■□□□□ 0.39
CLN3-253ENST00000636977 CCDC191Q8NCU4 936 aa17.5■□□□□ 0.39
CLN3-253ENST00000636977 FAM89AQ96GI7 184 aa17.5■□□□□ 0.39
CLN3-253ENST00000636977 C11orf57Q6ZUT1 292 aaPredicted RBP17.5■□□□□ 0.39
CLN3-253ENST00000636977 CCAR1Q8IX12 1150 aaKnown RBP17.5■□□□□ 0.39
CLN3-253ENST00000636977 AGXT2Q9BYV1 514 aa17.5■□□□□ 0.39
CLN3-253ENST00000636977 TRIM5Q9C035 493 aa17.5■□□□□ 0.39
CLN3-253ENST00000636977 ZSCAN16Q9H4T2 348 aaPredicted RBP17.5■□□□□ 0.39
CLN3-253ENST00000636977 GPR108Q9NPR9 543 aa17.5■□□□□ 0.39
CLN3-253ENST00000636977 PCDH11XQ9BZA7 1347 aa17.5■□□□□ 0.39
CLN3-253ENST00000636977 PCDH11YQ9BZA8 1340 aa17.5■□□□□ 0.39
CLN3-253ENST00000636977 NUP188Q5SRE5 1749 aa17.5■□□□□ 0.39
CLN3-253ENST00000636977 FDPSP14324 419 aaKnown RBP17.49■□□□□ 0.39
CLN3-253ENST00000636977 GJB4Q9NTQ9 266 aa17.49■□□□□ 0.39
CLN3-253ENST00000636977 KCPQ6ZWJ8 1503 aa17.49■□□□□ 0.39
CLN3-253ENST00000636977 HMGB1P09429 215 aaKnown RBP17.49■□□□□ 0.39
CLN3-253ENST00000636977 CADPS2Q86UW7 1296 aa17.49■□□□□ 0.39
CLN3-253ENST00000636977 LLPHQ9BRT6 129 aaKnown RBP17.49■□□□□ 0.39
CLN3-253ENST00000636977 STRN4Q9NRL3 753 aa17.49■□□□□ 0.39
CLN3-253ENST00000636977 WASHC4Q2M389 1173 aa17.49■□□□□ 0.39
CLN3-253ENST00000636977 DRC7Q8IY82 874 aa17.49■□□□□ 0.39
CLN3-253ENST00000636977 WDR17Q8IZU2 1322 aa17.49■□□□□ 0.39
CLN3-253ENST00000636977 FBXW7Q969H0 707 aa17.49■□□□□ 0.39
CLN3-253ENST00000636977 XAGE2Q96GT9 111 aa17.49■□□□□ 0.39
CLN3-253ENST00000636977 CFAP45Q9UL16 551 aa17.49■□□□□ 0.39
CLN3-253ENST00000636977 ABCC6O95255 1503 aa17.48■□□□□ 0.39
CLN3-253ENST00000636977 CPDO75976 1380 aa17.48■□□□□ 0.39
CLN3-253ENST00000636977 SALL1Q9NSC2 1324 aa17.48■□□□□ 0.39
CLN3-253ENST00000636977 ZNF75DP51815 510 aa17.48■□□□□ 0.39
CLN3-253ENST00000636977 CEP126Q9P2H0 1117 aa17.48■□□□□ 0.39
CLN3-253ENST00000636977 HSPA2P54652 639 aa17.48■□□□□ 0.39
CLN3-253ENST00000636977 SNW1Q13573 536 aaKnown RBP17.48■□□□□ 0.39
CLN3-253ENST00000636977 NKX2-3Q8TAU0 364 aa17.48■□□□□ 0.39
CLN3-253ENST00000636977 RCOR1Q9UKL0 485 aa17.48■□□□□ 0.39
CLN3-253ENST00000636977 MAPK8IP2Q13387 824 aaPredicted RBP17.47■□□□□ 0.39
CLN3-253ENST00000636977 NAA16Q6N069 864 aaPredicted RBP17.47■□□□□ 0.39
CLN3-253ENST00000636977 PLA2G4DQ86XP0 818 aa17.47■□□□□ 0.39
CLN3-253ENST00000636977 ZNF710Q8N1W2 664 aa17.47■□□□□ 0.39
CLN3-253ENST00000636977 KLHL34Q8N239 644 aa17.47■□□□□ 0.39
CLN3-253ENST00000636977 TDRD7Q8NHU6 1098 aaKnown RBP17.47■□□□□ 0.39
CLN3-253ENST00000636977 PUS7LQ9H0K6 701 aaKnown RBP17.47■□□□□ 0.39
CLN3-253ENST00000636977 DENND2AQ9ULE3 1009 aa17.47■□□□□ 0.39
CLN3-253ENST00000636977 ERVV-2B6SEH9 535 aa17.47■□□□□ 0.39
CLN3-253ENST00000636977 ZAP70P43403 619 aa17.47■□□□□ 0.39
CLN3-253ENST00000636977 CCDC57Q2TAC2 916 aa17.47■□□□□ 0.39
CLN3-253ENST00000636977 CCDC144BQ3MJ40 725 aa17.47■□□□□ 0.39
CLN3-253ENST00000636977 GORABQ5T7V8 394 aa17.47■□□□□ 0.39
CLN3-253ENST00000636977 PAXIP1Q6ZW49 1069 aaPredicted RBP17.47■□□□□ 0.39
CLN3-253ENST00000636977 BRINP3Q76B58 766 aa17.47■□□□□ 0.39
CLN3-253ENST00000636977 CCDC144CPQ8IYA2 1237 aa17.47■□□□□ 0.39
CLN3-253ENST00000636977 MAP7D2Q96T17 732 aa17.47■□□□□ 0.39
CLN3-253ENST00000636977 TTC39AQ5SRH9 613 aa17.46■□□□□ 0.39
CLN3-253ENST00000636977 CIAO1O76071 339 aa17.46■□□□□ 0.39
CLN3-253ENST00000636977 ISCA1Q9BUE6 129 aa17.46■□□□□ 0.39
CLN3-253ENST00000636977 GOLGA6L6A8MZA4 724 aa17.46■□□□□ 0.38
CLN3-253ENST00000636977 FGAP02671 866 aa17.46■□□□□ 0.38
CLN3-253ENST00000636977 TAOK2Q9UL54 1235 aa17.46■□□□□ 0.38
CLN3-253ENST00000636977 CARMIL3Q8ND23 1372 aa17.45■□□□□ 0.38
CLN3-253ENST00000636977 ARID5BQ14865 1188 aa17.45■□□□□ 0.38
CLN3-253ENST00000636977 IQCB1Q15051 598 aa17.45■□□□□ 0.38
CLN3-253ENST00000636977 PRIMPOLQ96LW4 560 aa17.45■□□□□ 0.38
CLN3-253ENST00000636977 ASAP1Q9ULH1 1129 aa17.45■□□□□ 0.38
CLN3-253ENST00000636977 ME1P48163 572 aa17.45■□□□□ 0.38
CLN3-253ENST00000636977 HMGN5P82970 282 aaKnown RBP17.45■□□□□ 0.38
CLN3-253ENST00000636977 TCIRG1Q13488 830 aa17.45■□□□□ 0.38
CLN3-253ENST00000636977 NWD2Q9ULI1 1742 aa17.44■□□□□ 0.38
CLN3-253ENST00000636977 POLR3DP05423 398 aaPredicted RBP17.44■□□□□ 0.38
CLN3-253ENST00000636977 IL2RBP14784 551 aa17.44■□□□□ 0.38
CLN3-253ENST00000636977 GPTP24298 496 aa17.44■□□□□ 0.38
CLN3-253ENST00000636977 DNAJC10Q8IXB1 793 aa17.44■□□□□ 0.38
CLN3-253ENST00000636977 ZNF274Q96GC6 653 aaPredicted RBP17.44■□□□□ 0.38
CLN3-253ENST00000636977 UBR2Q8IWV8 1755 aa17.44■□□□□ 0.38
CLN3-253ENST00000636977 CCDC158Q5M9N0 1113 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 731.9 ms