RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 H2AFB1P0C5Y9 115 aa9.89□□□□□ -0.83
VPS29-212ENST00000621131 H2AFB2P0C5Z0 115 aa9.89□□□□□ -0.83
VPS29-212ENST00000621131 GALNT11Q8NCW6 608 aa9.89□□□□□ -0.83
VPS29-212ENST00000621131 ADAM19Q9H013 955 aa9.89□□□□□ -0.83
VPS29-212ENST00000621131 EGFL7Q9UHF1 273 aa9.89□□□□□ -0.83
VPS29-212ENST00000621131 ICMTO60725 284 aa9.88□□□□□ -0.83
VPS29-212ENST00000621131 TNFRSF21O75509 655 aa9.88□□□□□ -0.83
VPS29-212ENST00000621131 ACPPP15309 386 aa9.88□□□□□ -0.83
VPS29-212ENST00000621131 USP5P45974 858 aa9.88□□□□□ -0.83
VPS29-212ENST00000621131 B4GALNT3Q6L9W6 998 aa9.88□□□□□ -0.83
VPS29-212ENST00000621131 MRPL18Q9H0U6 180 aaKnown RBP9.88□□□□□ -0.83
VPS29-212ENST00000621131 SH2B1Q9NRF2 756 aaPredicted RBP9.88□□□□□ -0.83
VPS29-212ENST00000621131 EHHADHQ08426 723 aa9.87□□□□□ -0.83
VPS29-212ENST00000621131 TP53INP1Q96A56 240 aa9.87□□□□□ -0.83
VPS29-212ENST00000621131 DZANK1Q9NVP4 752 aa9.87□□□□□ -0.83
VPS29-212ENST00000621131 ALX3O95076 343 aa9.86□□□□□ -0.83
VPS29-212ENST00000621131 TXNDC11Q6PKC3 985 aa9.86□□□□□ -0.83
VPS29-212ENST00000621131 GJD3Q8N144 294 aa9.86□□□□□ -0.83
VPS29-212ENST00000621131 RETREG2Q8NC44 543 aa9.86□□□□□ -0.83
VPS29-212ENST00000621131 DCAF11Q8TEB1 546 aa9.86□□□□□ -0.83
VPS29-212ENST00000621131 MEGF10Q96KG7 1140 aa9.86□□□□□ -0.83
VPS29-212ENST00000621131 AKTIPQ9H8T0 292 aa9.86□□□□□ -0.83
VPS29-212ENST00000621131 NISCHQ9Y2I1 1504 aa9.86□□□□□ -0.83
VPS29-212ENST00000621131 F8W735 103 aaPredicted RBP9.85□□□□□ -0.83
VPS29-212ENST00000621131 EREGO14944 169 aa9.85□□□□□ -0.83
VPS29-212ENST00000621131 TRPA1O75762 1119 aa9.85□□□□□ -0.83
VPS29-212ENST00000621131 PTPRAP18433 802 aa9.85□□□□□ -0.83
VPS29-212ENST00000621131 EPHA1P21709 976 aa9.85□□□□□ -0.83
VPS29-212ENST00000621131 SERPINB4P48594 390 aa9.85□□□□□ -0.83
VPS29-212ENST00000621131 FOXD3Q9UJU5 478 aaPredicted RBP9.85□□□□□ -0.83
VPS29-212ENST00000621131 CDC25BP30305 580 aa9.84□□□□□ -0.83
VPS29-212ENST00000621131 TXNDC2Q86VQ3 553 aa9.84□□□□□ -0.83
VPS29-212ENST00000621131 DZIP1LQ8IYY4 767 aaKnown RBP9.84□□□□□ -0.83
VPS29-212ENST00000621131 HHIPQ96QV1 700 aa9.84□□□□□ -0.83
VPS29-212ENST00000621131 KCNK4Q9NYG8 393 aa9.84□□□□□ -0.83
VPS29-212ENST00000621131 PDE2AO00408 941 aaPredicted RBP9.83□□□□□ -0.84
VPS29-212ENST00000621131 FSCN2O14926 492 aa9.83□□□□□ -0.84
VPS29-212ENST00000621131 PHACTR2O75167 634 aa9.83□□□□□ -0.84
VPS29-212ENST00000621131 CD68P34810 354 aaPredicted RBP9.83□□□□□ -0.84
VPS29-212ENST00000621131 PRSS36Q5K4E3 855 aa9.83□□□□□ -0.84
VPS29-212ENST00000621131 TMEM102Q8N9M5 508 aaPredicted RBP9.83□□□□□ -0.84
VPS29-212ENST00000621131 SNX29Q8TEQ0 813 aa9.83□□□□□ -0.84
VPS29-212ENST00000621131 FOXD4L6Q3SYB3 417 aaPredicted RBP9.82□□□□□ -0.84
VPS29-212ENST00000621131 FOXD4L3Q6VB84 417 aaPredicted RBP9.82□□□□□ -0.84
VPS29-212ENST00000621131 NXPE3Q969Y0 559 aa9.82□□□□□ -0.84
VPS29-212ENST00000621131 OSMRQ99650 979 aa9.82□□□□□ -0.84
VPS29-212ENST00000621131 ZFYVE28Q9HCC9 887 aa9.82□□□□□ -0.84
VPS29-212ENST00000621131 Q6ZS46 218 aa9.81□□□□□ -0.84
VPS29-212ENST00000621131 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.81□□□□□ -0.84
VPS29-212ENST00000621131 KLHL23Q8NBE8 558 aa9.81□□□□□ -0.84
VPS29-212ENST00000621131 CARD10Q9BWT7 1032 aa9.81□□□□□ -0.84
VPS29-212ENST00000621131 H3BRB1 525 aa9.8□□□□□ -0.84
VPS29-212ENST00000621131 WISP1O95388 367 aa9.8□□□□□ -0.84
VPS29-212ENST00000621131 ARHGAP4P98171 946 aa9.8□□□□□ -0.84
VPS29-212ENST00000621131 PDE4CQ08493 712 aa9.8□□□□□ -0.84
VPS29-212ENST00000621131 FAM117BQ6P1L5 589 aa9.8□□□□□ -0.84
VPS29-212ENST00000621131 AGGF1Q8N302 714 aaeCLIP9.8□□□□□ -0.84
VPS29-212ENST00000621131 KLHDC7BQ96G42 594 aa9.8□□□□□ -0.84
VPS29-212ENST00000621131 ZKSCAN3Q9BRR0 538 aa9.8□□□□□ -0.84
VPS29-212ENST00000621131 TUT1Q9H6E5 874 aaKnown RBP9.8□□□□□ -0.84
VPS29-212ENST00000621131 SOX13Q9UN79 622 aa9.8□□□□□ -0.84
VPS29-212ENST00000621131 H3BRJ5 948 aa9.79□□□□□ -0.84
VPS29-212ENST00000621131 EDN3P14138 238 aa9.79□□□□□ -0.84
VPS29-212ENST00000621131 PEAR1Q5VY43 1037 aaPredicted RBP9.79□□□□□ -0.84
VPS29-212ENST00000621131 GLYCTKQ8IVS8 523 aa9.79□□□□□ -0.84
VPS29-212ENST00000621131 Q8N3U1 123 aa9.79□□□□□ -0.84
VPS29-212ENST00000621131 SEC31BQ9NQW1 1179 aa9.79□□□□□ -0.84
VPS29-212ENST00000621131 FAM177BA6PVY3 158 aa9.78□□□□□ -0.84
VPS29-212ENST00000621131 DDX3YO15523 660 aaKnown RBP9.78□□□□□ -0.84
VPS29-212ENST00000621131 ZMYM1Q5SVZ6 1142 aa9.78□□□□□ -0.84
VPS29-212ENST00000621131 WNT8BQ93098 351 aa9.78□□□□□ -0.84
VPS29-212ENST00000621131 OSGEPQ9NPF4 335 aa9.78□□□□□ -0.84
VPS29-212ENST00000621131 BRPF3Q9ULD4 1205 aa9.78□□□□□ -0.84
VPS29-212ENST00000621131 AMOTL2Q9Y2J4 779 aa9.78□□□□□ -0.84
VPS29-212ENST00000621131 ADAM11O75078 769 aa9.77□□□□□ -0.85
VPS29-212ENST00000621131 CABP4P57796 275 aa9.77□□□□□ -0.85
VPS29-212ENST00000621131 PIP4K2BP78356 416 aa9.77□□□□□ -0.85
VPS29-212ENST00000621131 KIAA1211Q6ZU35 1233 aa9.77□□□□□ -0.85
VPS29-212ENST00000621131 FOXD4L4Q8WXT5 416 aaPredicted RBP9.77□□□□□ -0.85
VPS29-212ENST00000621131 UBL7Q96S82 380 aaPredicted RBP9.77□□□□□ -0.85
VPS29-212ENST00000621131 LATS2Q9NRM7 1088 aa9.77□□□□□ -0.85
VPS29-212ENST00000621131 XP32Q5T750 250 aa9.76□□□□□ -0.85
VPS29-212ENST00000621131 PRR23CQ6ZRP0 262 aa9.76□□□□□ -0.85
VPS29-212ENST00000621131 VN1R5Q7Z5H4 357 aa9.76□□□□□ -0.85
VPS29-212ENST00000621131 BSNDQ8WZ55 320 aa9.76□□□□□ -0.85
VPS29-212ENST00000621131 BHLHE41Q9C0J9 482 aaPredicted RBP9.76□□□□□ -0.85
VPS29-212ENST00000621131 SOX1O00570 391 aaPredicted RBP9.75□□□□□ -0.85
VPS29-212ENST00000621131 POLR3DP05423 398 aaPredicted RBP9.75□□□□□ -0.85
VPS29-212ENST00000621131 HGSNATQ68CP4 663 aa9.75□□□□□ -0.85
VPS29-212ENST00000621131 ACAD11Q709F0 780 aa9.75□□□□□ -0.85
VPS29-212ENST00000621131 GLB1P16278 677 aa9.74□□□□□ -0.85
VPS29-212ENST00000621131 DUOXA2Q1HG44 320 aa9.74□□□□□ -0.85
VPS29-212ENST00000621131 GALNT12Q8IXK2 581 aa9.74□□□□□ -0.85
VPS29-212ENST00000621131 UBASH3BQ8TF42 649 aa9.73□□□□□ -0.85
VPS29-212ENST00000621131 CITED4Q96RK1 184 aa9.73□□□□□ -0.85
VPS29-212ENST00000621131 FAM129BQ96TA1 746 aa9.73□□□□□ -0.85
VPS29-212ENST00000621131 NDUFB5O43674 189 aa9.72□□□□□ -0.85
VPS29-212ENST00000621131 USPL1Q5W0Q7 1092 aa9.72□□□□□ -0.85
VPS29-212ENST00000621131 CCER1Q8TC90 406 aaPredicted RBP9.72□□□□□ -0.85
VPS29-212ENST00000621131 SLC7A3Q8WY07 619 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms