RNA–Protein interactions for RNA: ENST00000617771.5

VEGFA-228, Transcript of vascular endothelial growth factor A, human

TSL 1 (best) BASIC

Gene VEGFA, Length 1,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-228	ENST00000617771	CELF2	O95319	508 aa	Known RBP	31.81	■■■□□ 2.68
VEGFA-228	ENST00000617771	SUCLG2	Q96I99	432 aa		31.81	■■■□□ 2.68
VEGFA-228	ENST00000617771	NBPF7	P0C2Y1	421 aa	Predicted RBP	31.8	■■■□□ 2.68
VEGFA-228	ENST00000617771	ZNF280A	P59817	542 aa	Predicted RBP	31.8	■■■□□ 2.68
VEGFA-228	ENST00000617771	LDHAL6A	Q6ZMR3	332 aa		31.8	■■■□□ 2.68
VEGFA-228	ENST00000617771	TXNRD3	Q86VQ6	643 aa		31.8	■■■□□ 2.68
VEGFA-228	ENST00000617771	DCPS	Q96C86	337 aa	Known RBP	31.8	■■■□□ 2.68
VEGFA-228	ENST00000617771	GML	Q99445	158 aa		31.8	■■■□□ 2.68
VEGFA-228	ENST00000617771	USP17L8	P0C7I0	530 aa		31.79	■■■□□ 2.68
VEGFA-228	ENST00000617771	USP48	Q86UV5	1035 aa		31.79	■■■□□ 2.68
VEGFA-228	ENST00000617771	FBXW7	Q969H0	707 aa		31.79	■■■□□ 2.68
VEGFA-228	ENST00000617771	CNNM1	Q9NRU3	951 aa		31.79	■■■□□ 2.68
VEGFA-228	ENST00000617771	TLL2	Q9Y6L7	1015 aa		31.79	■■■□□ 2.68
VEGFA-228	ENST00000617771	PCNT	O95613	3336 aa		31.79	■■■□□ 2.68
VEGFA-228	ENST00000617771	KLRK1	P26718	216 aa		31.78	■■■□□ 2.68
VEGFA-228	ENST00000617771	STRIP1	Q5VSL9	837 aa		31.78	■■■□□ 2.68
VEGFA-228	ENST00000617771	ZNF594	Q96JF6	807 aa	Predicted RBP	31.78	■■■□□ 2.68
VEGFA-228	ENST00000617771	ZNF408	Q9H9D4	720 aa		31.78	■■■□□ 2.68
VEGFA-228	ENST00000617771	MYO3B	Q8WXR4	1341 aa		31.77	■■■□□ 2.68
VEGFA-228	ENST00000617771	WDR33	Q9C0J8	1336 aa	Known RBP	31.77	■■■□□ 2.68
VEGFA-228	ENST00000617771	TAF5L	O75529	589 aa		31.77	■■■□□ 2.68
VEGFA-228	ENST00000617771	DACT2	Q5SW24	774 aa		31.77	■■■□□ 2.68
VEGFA-228	ENST00000617771	KRT26	Q7Z3Y9	468 aa		31.77	■■■□□ 2.68
VEGFA-228	ENST00000617771	HELB	Q8NG08	1087 aa	Predicted RBP	31.77	■■■□□ 2.68
VEGFA-228	ENST00000617771	KAZALD1	Q96I82	304 aa		31.77	■■■□□ 2.68
VEGFA-228	ENST00000617771	ECE1	P42892	770 aa		31.76	■■■□□ 2.67
VEGFA-228	ENST00000617771	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	31.76	■■■□□ 2.67
VEGFA-228	ENST00000617771	C15orf52	Q6ZUT6	534 aa	Known RBP	31.75	■■■□□ 2.67
VEGFA-228	ENST00000617771	MYOZ2	Q9NPC6	264 aa		31.75	■■■□□ 2.67
VEGFA-228	ENST00000617771	BICC1	Q9H694	974 aa	Known RBP	31.74	■■■□□ 2.67
VEGFA-228	ENST00000617771	GGA3	Q9NZ52	723 aa		31.74	■■■□□ 2.67
VEGFA-228	ENST00000617771	SNAP23	O00161	211 aa		31.73	■■■□□ 2.67
VEGFA-228	ENST00000617771	DIEXF	Q68CQ4	756 aa	Known RBP	31.73	■■■□□ 2.67
VEGFA-228	ENST00000617771	TTLL5	Q6EMB2	1281 aa		31.73	■■■□□ 2.67
VEGFA-228	ENST00000617771	SAPCD2	Q86UD0	394 aa		31.73	■■■□□ 2.67
VEGFA-228	ENST00000617771	SULF1	Q8IWU6	871 aa		31.73	■■■□□ 2.67
VEGFA-228	ENST00000617771	OGFOD1	Q8N543	542 aa		31.73	■■■□□ 2.67
VEGFA-228	ENST00000617771	CAPNS2	Q96L46	248 aa		31.73	■■■□□ 2.67
VEGFA-228	ENST00000617771	CD209	Q9NNX6	404 aa		31.73	■■■□□ 2.67
VEGFA-228	ENST00000617771	SCARF1	Q14162	830 aa		31.72	■■■□□ 2.67
VEGFA-228	ENST00000617771	RABL6	Q3YEC7	729 aa	Predicted RBP	31.72	■■■□□ 2.67
VEGFA-228	ENST00000617771	AIDA	Q96BJ3	306 aa		31.72	■■■□□ 2.67
VEGFA-228	ENST00000617771		A0A1B0GUL6	1792 aa		31.71	■■■□□ 2.67
VEGFA-228	ENST00000617771	ADM5	C9JUS6	153 aa		31.71	■■■□□ 2.67
VEGFA-228	ENST00000617771	PLIN1	O60240	522 aa		31.71	■■■□□ 2.67
VEGFA-228	ENST00000617771	MMP14	P50281	582 aa		31.71	■■■□□ 2.67
VEGFA-228	ENST00000617771	IFFO2	Q5TF58	517 aa		31.71	■■■□□ 2.67
VEGFA-228	ENST00000617771	ZNF804A	Q7Z570	1209 aa		31.71	■■■□□ 2.67
VEGFA-228	ENST00000617771	MXD3	Q9BW11	206 aa		31.71	■■■□□ 2.67
VEGFA-228	ENST00000617771	IRS2	Q9Y4H2	1338 aa		31.71	■■■□□ 2.67
VEGFA-228	ENST00000617771	GTF2I	P78347	998 aa		31.7	■■■□□ 2.67
VEGFA-228	ENST00000617771	CYP4F22	Q6NT55	531 aa		31.7	■■■□□ 2.67
VEGFA-228	ENST00000617771	HHIPL1	Q96JK4	782 aa		31.7	■■■□□ 2.67
VEGFA-228	ENST00000617771	USP44	Q9H0E7	712 aa		31.7	■■■□□ 2.67
VEGFA-228	ENST00000617771	BRPF1	P55201	1214 aa	Predicted RBP	31.69	■■■□□ 2.66
VEGFA-228	ENST00000617771	GRM1	Q13255	1194 aa		31.69	■■■□□ 2.66
VEGFA-228	ENST00000617771	ANGEL2	Q5VTE6	544 aa	Known RBP	31.69	■■■□□ 2.66
VEGFA-228	ENST00000617771	ASTN2	O75129	1339 aa	Predicted RBP	31.69	■■■□□ 2.66
VEGFA-228	ENST00000617771	MAP2K1	Q02750	393 aa	Predicted RBP	31.68	■■■□□ 2.66
VEGFA-228	ENST00000617771	COL13A1	Q5TAT6	717 aa	Predicted RBP	31.68	■■■□□ 2.66
VEGFA-228	ENST00000617771	MIER1	Q8N108	512 aa		31.68	■■■□□ 2.66
VEGFA-228	ENST00000617771	ANKRD44	Q8N8A2	993 aa		31.68	■■■□□ 2.66
VEGFA-228	ENST00000617771	NOB1	Q9ULX3	412 aa	Known RBP	31.68	■■■□□ 2.66
VEGFA-228	ENST00000617771	ZNF646	O15015	1829 aa	Predicted RBP	31.68	■■■□□ 2.66
VEGFA-228	ENST00000617771	DLK2	Q6UY11	383 aa		31.67	■■■□□ 2.66
VEGFA-228	ENST00000617771	API5	Q9BZZ5	524 aa	Known RBP	31.67	■■■□□ 2.66
VEGFA-228	ENST00000617771	WBP1L	Q9NX94	342 aa		31.67	■■■□□ 2.66
VEGFA-228	ENST00000617771	HDAC9	Q9UKV0	1011 aa		31.67	■■■□□ 2.66
VEGFA-228	ENST00000617771	PITPNM2	Q9BZ72	1349 aa		31.67	■■■□□ 2.66
VEGFA-228	ENST00000617771	UBE4A	Q14139	1066 aa		31.66	■■■□□ 2.66
VEGFA-228	ENST00000617771	PUS3	Q9BZE2	481 aa	Known RBP	31.66	■■■□□ 2.66
VEGFA-228	ENST00000617771	MROH5	Q6ZUA9	1318 aa		31.66	■■■□□ 2.66
VEGFA-228	ENST00000617771	FOXN1	O15353	648 aa		31.65	■■■□□ 2.66
VEGFA-228	ENST00000617771	IL1R1	P14778	569 aa		31.65	■■■□□ 2.66
VEGFA-228	ENST00000617771	GBA2	Q9HCG7	927 aa	Predicted RBP	31.65	■■■□□ 2.66
VEGFA-228	ENST00000617771	RARS	P54136	660 aa	Known RBP	31.64	■■■□□ 2.66
VEGFA-228	ENST00000617771	KIAA0825	Q8IV33	1275 aa		31.64	■■■□□ 2.66
VEGFA-228	ENST00000617771	C2orf69	Q8N8R5	385 aa		31.64	■■■□□ 2.66
VEGFA-228	ENST00000617771	RIPOR2	Q9Y4F9	1068 aa		31.64	■■■□□ 2.66
VEGFA-228	ENST00000617771	THSD7B	Q9C0I4	1608 aa		31.64	■■■□□ 2.65
VEGFA-228	ENST00000617771	HUNK	P57058	714 aa		31.63	■■■□□ 2.65
VEGFA-228	ENST00000617771	CTCF	P49711	727 aa	Predicted RBP	31.62	■■■□□ 2.65
VEGFA-228	ENST00000617771	NBPF9	Q3BBW0	867 aa		31.62	■■■□□ 2.65
VEGFA-228	ENST00000617771	CDCA5	Q96FF9	252 aa		31.62	■■■□□ 2.65
VEGFA-228	ENST00000617771	KIF16B	Q96L93	1317 aa		31.62	■■■□□ 2.65
VEGFA-228	ENST00000617771	POLR2A	P24928	1970 aa	Known RBP	31.61	■■■□□ 2.65
VEGFA-228	ENST00000617771	WNT10B	O00744	389 aa		31.61	■■■□□ 2.65
VEGFA-228	ENST00000617771	MAP2K2	P36507	400 aa		31.61	■■■□□ 2.65
VEGFA-228	ENST00000617771	METTL24	Q5JXM2	366 aa		31.6	■■■□□ 2.65
VEGFA-228	ENST00000617771	UBTFL1	P0CB47	393 aa	Predicted RBP	31.59	■■■□□ 2.65
VEGFA-228	ENST00000617771	FKBP1A	P62942	108 aa	Known RBP	31.59	■■■□□ 2.65
VEGFA-228	ENST00000617771	LRRC24	Q50LG9	513 aa		31.59	■■■□□ 2.65
VEGFA-228	ENST00000617771	BEGAIN	Q9BUH8	593 aa		31.59	■■■□□ 2.65
VEGFA-228	ENST00000617771	AOC2	O75106	756 aa		31.58	■■■□□ 2.65
VEGFA-228	ENST00000617771	ARHGAP45	Q92619	1136 aa		31.58	■■■□□ 2.65
VEGFA-228	ENST00000617771	HDAC5	Q9UQL6	1122 aa		31.58	■■■□□ 2.65
VEGFA-228	ENST00000617771	SASH1	O94885	1247 aa		31.57	■■■□□ 2.64
VEGFA-228	ENST00000617771	HIBADH	P31937	336 aa	Known RBP	31.57	■■■□□ 2.64
VEGFA-228	ENST00000617771	CERS5	Q8N5B7	392 aa		31.57	■■■□□ 2.64
VEGFA-228	ENST00000617771	GYG1	P46976	350 aa		31.56	■■■□□ 2.64

Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms