RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 PTPN12Q05209 780 aaKnown RBP20.22■□□□□ 0.83
TRIM28-213ENST00000598355 HELBQ8NG08 1087 aaPredicted RBP20.22■□□□□ 0.83
TRIM28-213ENST00000598355 GMLQ99445 158 aa20.22■□□□□ 0.83
TRIM28-213ENST00000598355 POLR2AP24928 1970 aaKnown RBP20.22■□□□□ 0.83
TRIM28-213ENST00000598355 MROH5Q6ZUA9 1318 aa20.22■□□□□ 0.83
TRIM28-213ENST00000598355 PASKQ96RG2 1323 aa20.22■□□□□ 0.83
TRIM28-213ENST00000598355 APLP1P51693 650 aa20.21■□□□□ 0.83
TRIM28-213ENST00000598355 LRRC24Q50LG9 513 aa20.21■□□□□ 0.83
TRIM28-213ENST00000598355 TMEM57Q8N5G2 664 aa20.21■□□□□ 0.83
TRIM28-213ENST00000598355 CLUAP1Q96AJ1 413 aa20.21■□□□□ 0.83
TRIM28-213ENST00000598355 ZBTB12Q9Y330 459 aaPredicted RBP20.21■□□□□ 0.83
TRIM28-213ENST00000598355 SHTN1A0MZ66 631 aa20.2■□□□□ 0.82
TRIM28-213ENST00000598355 RLBP1P12271 317 aa20.2■□□□□ 0.82
TRIM28-213ENST00000598355 UBE4AQ14139 1066 aa20.2■□□□□ 0.82
TRIM28-213ENST00000598355 EAPPQ56P03 285 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-213ENST00000598355 RSBN1LQ6PCB5 846 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-213ENST00000598355 AGBL3Q8NEM8 1001 aa20.2■□□□□ 0.82
TRIM28-213ENST00000598355 KLHDC4Q8TBB5 520 aa20.2■□□□□ 0.82
TRIM28-213ENST00000598355 FBXO3Q9UK99 471 aa20.2■□□□□ 0.82
TRIM28-213ENST00000598355 ECM29Q5VYK3 1845 aa20.2■□□□□ 0.82
TRIM28-213ENST00000598355 USP17L3A6NCW0 530 aa20.19■□□□□ 0.82
TRIM28-213ENST00000598355 USP17L4A6NCW7 530 aa20.19■□□□□ 0.82
TRIM28-213ENST00000598355 G3V3G9 751 aa20.19■□□□□ 0.82
TRIM28-213ENST00000598355 ITGBL1O95965 494 aaPredicted RBP20.19■□□□□ 0.82
TRIM28-213ENST00000598355 KCNJ4P48050 445 aa20.19■□□□□ 0.82
TRIM28-213ENST00000598355 DCAF8Q5TAQ9 597 aa20.19■□□□□ 0.82
TRIM28-213ENST00000598355 USP17L1Q7RTZ2 530 aa20.19■□□□□ 0.82
TRIM28-213ENST00000598355 MICALL2Q8IY33 904 aa20.19■□□□□ 0.82
TRIM28-213ENST00000598355 TRPM4Q8TD43 1214 aa20.19■□□□□ 0.82
TRIM28-213ENST00000598355 PGAP2Q9UHJ9 254 aa20.19■□□□□ 0.82
TRIM28-213ENST00000598355 CNOT7Q9UIV1 285 aaKnown RBP20.19■□□□□ 0.82
TRIM28-213ENST00000598355 IL1R1P14778 569 aa20.18■□□□□ 0.82
TRIM28-213ENST00000598355 DACT2Q5SW24 774 aa20.18■□□□□ 0.82
TRIM28-213ENST00000598355 STRIP1Q5VSL9 837 aa20.18■□□□□ 0.82
TRIM28-213ENST00000598355 DZIP1LQ8IYY4 767 aaKnown RBP20.18■□□□□ 0.82
TRIM28-213ENST00000598355 CD209Q9NNX6 404 aa20.18■□□□□ 0.82
TRIM28-213ENST00000598355 EYA2O00167 538 aa20.17■□□□□ 0.82
TRIM28-213ENST00000598355 CIAO1O76071 339 aa20.17■□□□□ 0.82
TRIM28-213ENST00000598355 HIRAP54198 1017 aaPredicted RBP20.17■□□□□ 0.82
TRIM28-213ENST00000598355 ZNF280AP59817 542 aaPredicted RBP20.17■□□□□ 0.82
TRIM28-213ENST00000598355 ATG9AQ7Z3C6 839 aa20.17■□□□□ 0.82
TRIM28-213ENST00000598355 H7C1D1 291 aa20.16■□□□□ 0.82
TRIM28-213ENST00000598355 PDE8BO95263 885 aa20.16■□□□□ 0.82
TRIM28-213ENST00000598355 FGFR2P21802 821 aa20.16■□□□□ 0.82
TRIM28-213ENST00000598355 ZC3H15Q8WU90 426 aaKnown RBP20.16■□□□□ 0.82
TRIM28-213ENST00000598355 COPRSQ9NQ92 184 aa20.16■□□□□ 0.82
TRIM28-213ENST00000598355 MYO3BQ8WXR4 1341 aa20.16■□□□□ 0.82
TRIM28-213ENST00000598355 EGFRP00533 1210 aa20.15■□□□□ 0.82
TRIM28-213ENST00000598355 METTL24Q5JXM2 366 aa20.15■□□□□ 0.82
TRIM28-213ENST00000598355 MAP1SQ66K74 1059 aaPredicted RBP20.15■□□□□ 0.82
TRIM28-213ENST00000598355 ZNF804AQ7Z570 1209 aa20.15■□□□□ 0.82
TRIM28-213ENST00000598355 FTSJ3Q8IY81 847 aaKnown RBP20.15■□□□□ 0.82
TRIM28-213ENST00000598355 RCAN3Q9UKA8 241 aa20.15■□□□□ 0.82
TRIM28-213ENST00000598355 PLIN1O60240 522 aa20.14■□□□□ 0.81
TRIM28-213ENST00000598355 GNAI2P04899 355 aa20.14■□□□□ 0.81
TRIM28-213ENST00000598355 CNTROBQ8N137 903 aa20.14■□□□□ 0.81
TRIM28-213ENST00000598355 SAMD7Q7Z3H4 446 aa20.13■□□□□ 0.81
TRIM28-213ENST00000598355 CLEC11AQ9Y240 323 aa20.13■□□□□ 0.81
TRIM28-213ENST00000598355 FAM205AQ6ZU69 1335 aa20.12■□□□□ 0.81
TRIM28-213ENST00000598355 ZBTB7BO15156 539 aaPredicted RBP20.12■□□□□ 0.81
TRIM28-213ENST00000598355 MMP14P50281 582 aa20.12■□□□□ 0.81
TRIM28-213ENST00000598355 FKBP1AP62942 108 aaKnown RBP20.12■□□□□ 0.81
TRIM28-213ENST00000598355 PUM3Q15397 648 aaKnown RBP20.12■□□□□ 0.81
TRIM28-213ENST00000598355 TTLL5Q6EMB2 1281 aa20.12■□□□□ 0.81
TRIM28-213ENST00000598355 FBXO33Q7Z6M2 555 aa20.12■□□□□ 0.81
TRIM28-213ENST00000598355 DNAJC5GQ8N7S2 189 aa20.12■□□□□ 0.81
TRIM28-213ENST00000598355 TDRD7Q8NHU6 1098 aaKnown RBP20.12■□□□□ 0.81
TRIM28-213ENST00000598355 FAM84BQ96KN1 310 aaPredicted RBP20.12■□□□□ 0.81
TRIM28-213ENST00000598355 PA2G4Q9UQ80 394 aaKnown RBP20.12■□□□□ 0.81
TRIM28-213ENST00000598355 SRGAP3O43295 1099 aa20.11■□□□□ 0.81
TRIM28-213ENST00000598355 USP17L8P0C7I0 530 aa20.11■□□□□ 0.81
TRIM28-213ENST00000598355 KIF4BQ2VIQ3 1234 aa20.11■□□□□ 0.81
TRIM28-213ENST00000598355 ITPRIPQ8IWB1 547 aa20.11■□□□□ 0.81
TRIM28-213ENST00000598355 MXD3Q9BW11 206 aa20.11■□□□□ 0.81
TRIM28-213ENST00000598355 PNMA6EA0A0J9YXQ4 647 aa20.1■□□□□ 0.81
TRIM28-213ENST00000598355 IL15P40933 162 aaPredicted RBP20.1■□□□□ 0.81
TRIM28-213ENST00000598355 GYG1P46976 350 aa20.1■□□□□ 0.81
TRIM28-213ENST00000598355 GTF2IP78347 998 aa20.1■□□□□ 0.81
TRIM28-213ENST00000598355 TBC1D10BQ4KMP7 808 aaPredicted RBP20.1■□□□□ 0.81
TRIM28-213ENST00000598355 CERS5Q8N5B7 392 aa20.1■□□□□ 0.81
TRIM28-213ENST00000598355 CREBZFQ9NS37 354 aa20.1■□□□□ 0.81
TRIM28-213ENST00000598355 ZBTB22O15209 634 aa20.09■□□□□ 0.81
TRIM28-213ENST00000598355 SASH1O94885 1247 aa20.09■□□□□ 0.81
TRIM28-213ENST00000598355 MS4A1P11836 297 aa20.09■□□□□ 0.81
TRIM28-213ENST00000598355 HIBADHP31937 336 aaKnown RBP20.09■□□□□ 0.81
TRIM28-213ENST00000598355 HTRA3P83110 453 aa20.09■□□□□ 0.81
TRIM28-213ENST00000598355 POLA2Q14181 598 aa20.09■□□□□ 0.81
TRIM28-213ENST00000598355 PANK1Q8TE04 598 aa20.09■□□□□ 0.81
TRIM28-213ENST00000598355 SIL1Q9H173 461 aa20.09■□□□□ 0.81
TRIM28-213ENST00000598355 LPIN2Q92539 896 aa20.08■□□□□ 0.81
TRIM28-213ENST00000598355 MYOZ2Q9NPC6 264 aa20.08■□□□□ 0.81
TRIM28-213ENST00000598355 THSD7BQ9C0I4 1608 aa20.08■□□□□ 0.8
TRIM28-213ENST00000598355 COL1A1P02452 1464 aaPredicted RBP20.07■□□□□ 0.8
TRIM28-213ENST00000598355 IFIT1P09914 478 aaKnown RBP20.07■□□□□ 0.8
TRIM28-213ENST00000598355 MVPQ14764 893 aaKnown RBP20.07■□□□□ 0.8
TRIM28-213ENST00000598355 SSH3Q8TE77 659 aa20.07■□□□□ 0.8
TRIM28-213ENST00000598355 ZBED3Q96IU2 234 aaPredicted RBP20.07■□□□□ 0.8
TRIM28-213ENST00000598355 PITPNM2Q9BZ72 1349 aa20.06■□□□□ 0.8
TRIM28-213ENST00000598355 GLIS2Q9BZE0 524 aaPredicted RBP20.06■□□□□ 0.8
TRIM28-213ENST00000598355 CEP126Q9P2H0 1117 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms