RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 RPAP1Q9BWH6 1393 aaPredicted RBP20.23■□□□□ 0.83
SHKBP1-205ENST00000594973 JCADQ9P266 1359 aa20.23■□□□□ 0.83
SHKBP1-205ENST00000594973 SUSD4Q5VX71 490 aa20.22■□□□□ 0.83
SHKBP1-205ENST00000594973 BLOC1S2Q6QNY1 142 aa20.22■□□□□ 0.83
SHKBP1-205ENST00000594973 CCDC83Q8IWF9 413 aa20.22■□□□□ 0.83
SHKBP1-205ENST00000594973 NUP98P52948 1817 aa20.22■□□□□ 0.83
SHKBP1-205ENST00000594973 PRPF40AO75400 957 aaKnown RBP20.22■□□□□ 0.83
SHKBP1-205ENST00000594973 KCNQ4P56696 695 aa20.22■□□□□ 0.83
SHKBP1-205ENST00000594973 ATP2B3Q16720 1220 aa20.22■□□□□ 0.83
SHKBP1-205ENST00000594973 GPT2Q8TD30 523 aa20.22■□□□□ 0.83
SHKBP1-205ENST00000594973 BBXQ8WY36 941 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-205ENST00000594973 SCARF1Q14162 830 aa20.21■□□□□ 0.83
SHKBP1-205ENST00000594973 HMG20BQ9P0W2 317 aa20.21■□□□□ 0.83
SHKBP1-205ENST00000594973 SH3TC1Q8TE82 1336 aa20.21■□□□□ 0.83
SHKBP1-205ENST00000594973 RIC1Q4ADV7 1423 aa20.21■□□□□ 0.83
SHKBP1-205ENST00000594973 NWD2Q9ULI1 1742 aa20.21■□□□□ 0.83
SHKBP1-205ENST00000594973 USPL1Q5W0Q7 1092 aa20.21■□□□□ 0.83
SHKBP1-205ENST00000594973 PI16Q6UXB8 463 aa20.21■□□□□ 0.83
SHKBP1-205ENST00000594973 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.21■□□□□ 0.83
SHKBP1-205ENST00000594973 CAMTA2O94983 1202 aa20.2■□□□□ 0.82
SHKBP1-205ENST00000594973 ME3Q16798 604 aa20.2■□□□□ 0.82
SHKBP1-205ENST00000594973 ANKRD36CQ5JPF3 1778 aa20.2■□□□□ 0.82
SHKBP1-205ENST00000594973 NECAB1Q8N987 351 aa20.2■□□□□ 0.82
SHKBP1-205ENST00000594973 TPCN1Q9ULQ1 816 aa20.2■□□□□ 0.82
SHKBP1-205ENST00000594973 SMC3Q9UQE7 1217 aa20.2■□□□□ 0.82
SHKBP1-205ENST00000594973 U3KPZ7 1027 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-205ENST00000594973 RNF113AO15541 343 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-205ENST00000594973 MBD3O95983 291 aa20.19■□□□□ 0.82
SHKBP1-205ENST00000594973 RPS6KB1P23443 525 aa20.19■□□□□ 0.82
SHKBP1-205ENST00000594973 GTF2E1P29083 439 aaPredicted RBP20.19■□□□□ 0.82
SHKBP1-205ENST00000594973 PIBF1Q8WXW3 757 aa20.19■□□□□ 0.82
SHKBP1-205ENST00000594973 SMARCC1Q92922 1105 aaPredicted RBP20.19■□□□□ 0.82
SHKBP1-205ENST00000594973 HELLSQ9NRZ9 838 aa20.19■□□□□ 0.82
SHKBP1-205ENST00000594973 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.19■□□□□ 0.82
SHKBP1-205ENST00000594973 BCL9LQ86UU0 1499 aa20.19■□□□□ 0.82
SHKBP1-205ENST00000594973 PTMAP06454 111 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-205ENST00000594973 CYP21A2P08686 494 aa20.19■□□□□ 0.82
SHKBP1-205ENST00000594973 CBX1P83916 185 aa20.19■□□□□ 0.82
SHKBP1-205ENST00000594973 VPS72Q15906 364 aa20.19■□□□□ 0.82
SHKBP1-205ENST00000594973 ZMYM1Q5SVZ6 1142 aa20.19■□□□□ 0.82
SHKBP1-205ENST00000594973 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.19■□□□□ 0.82
SHKBP1-205ENST00000594973 UTP14AQ9BVJ6 771 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-205ENST00000594973 NIP7Q9Y221 180 aaKnown RBP eCLIP20.19■□□□□ 0.82
SHKBP1-205ENST00000594973 ZAP70P43403 619 aa20.18■□□□□ 0.82
SHKBP1-205ENST00000594973 DNTTIP2Q5QJE6 756 aaKnown RBP20.18■□□□□ 0.82
SHKBP1-205ENST00000594973 PTF1AQ7RTS3 328 aa20.18■□□□□ 0.82
SHKBP1-205ENST00000594973 HELBQ8NG08 1087 aaPredicted RBP20.18■□□□□ 0.82
SHKBP1-205ENST00000594973 ZSCAN31Q96LW9 406 aaPredicted RBP20.18■□□□□ 0.82
SHKBP1-205ENST00000594973 SH2B1Q9NRF2 756 aaPredicted RBP20.18■□□□□ 0.82
SHKBP1-205ENST00000594973 TSGA10IPQ3SY00 556 aa20.18■□□□□ 0.82
SHKBP1-205ENST00000594973 TMEM63CQ9P1W3 806 aa20.18■□□□□ 0.82
SHKBP1-205ENST00000594973 KIF3AQ9Y496 699 aa20.18■□□□□ 0.82
SHKBP1-205ENST00000594973 MAST3O60307 1309 aa20.17■□□□□ 0.82
SHKBP1-205ENST00000594973 WDR33Q9C0J8 1336 aaKnown RBP20.17■□□□□ 0.82
SHKBP1-205ENST00000594973 RBM27Q9P2N5 1060 aaKnown RBP20.17■□□□□ 0.82
SHKBP1-205ENST00000594973 ST3GAL1Q11201 340 aa20.16■□□□□ 0.82
SHKBP1-205ENST00000594973 KRT32Q14532 448 aa20.16■□□□□ 0.82
SHKBP1-205ENST00000594973 WASHC4Q2M389 1173 aa20.16■□□□□ 0.82
SHKBP1-205ENST00000594973 NEK1Q96PY6 1258 aa20.16■□□□□ 0.82
SHKBP1-205ENST00000594973 MYH14Q7Z406 1995 aaKnown RBP20.16■□□□□ 0.82
SHKBP1-205ENST00000594973 SYCE3A1L190 88 aa20.16■□□□□ 0.82
SHKBP1-205ENST00000594973 M0R2C6 588 aa20.16■□□□□ 0.82
SHKBP1-205ENST00000594973 PDE8BO95263 885 aa20.16■□□□□ 0.82
SHKBP1-205ENST00000594973 GJB2P29033 226 aa20.16■□□□□ 0.82
SHKBP1-205ENST00000594973 FAM182BQ5T319 152 aa20.16■□□□□ 0.82
SHKBP1-205ENST00000594973 AEBP2Q6ZN18 517 aaPredicted RBP20.16■□□□□ 0.82
SHKBP1-205ENST00000594973 VGLL2Q8N8G2 317 aa20.16■□□□□ 0.82
SHKBP1-205ENST00000594973 SYT1P21579 422 aa20.15■□□□□ 0.82
SHKBP1-205ENST00000594973 TOB2Q14106 344 aaPredicted RBP20.15■□□□□ 0.82
SHKBP1-205ENST00000594973 LINC00116Q8NCU8 138 aa20.15■□□□□ 0.82
SHKBP1-205ENST00000594973 OSBP2Q969R2 916 aa20.15■□□□□ 0.82
SHKBP1-205ENST00000594973 SEC31BQ9NQW1 1179 aa20.15■□□□□ 0.82
SHKBP1-205ENST00000594973 HSPD1P10809 573 aaKnown RBP20.15■□□□□ 0.82
SHKBP1-205ENST00000594973 MCAMP43121 646 aa20.15■□□□□ 0.82
SHKBP1-205ENST00000594973 SMIM5Q71RC9 77 aa20.15■□□□□ 0.82
SHKBP1-205ENST00000594973 STX6O43752 255 aa20.14■□□□□ 0.82
SHKBP1-205ENST00000594973 STK3Q13188 491 aa20.14■□□□□ 0.82
SHKBP1-205ENST00000594973 NOLC1Q14978 699 aaKnown RBP eCLIP20.14■□□□□ 0.82
SHKBP1-205ENST00000594973 ANKRD1Q15327 319 aa20.14■□□□□ 0.82
SHKBP1-205ENST00000594973 PARP10Q53GL7 1025 aa20.14■□□□□ 0.82
SHKBP1-205ENST00000594973 USP21Q9UK80 565 aa20.14■□□□□ 0.82
SHKBP1-205ENST00000594973 MYH3P11055 1940 aa20.14■□□□□ 0.81
SHKBP1-205ENST00000594973 A0A0G2JLW4 131 aa20.14■□□□□ 0.81
SHKBP1-205ENST00000594973 DSCC1Q9BVC3 393 aa20.14■□□□□ 0.81
SHKBP1-205ENST00000594973 SNAP23O00161 211 aa20.13■□□□□ 0.81
SHKBP1-205ENST00000594973 UVSSAQ2YD98 709 aa20.13■□□□□ 0.81
SHKBP1-205ENST00000594973 AK7Q96M32 723 aa20.13■□□□□ 0.81
SHKBP1-205ENST00000594973 MPHOSPH8Q99549 860 aa20.13■□□□□ 0.81
SHKBP1-205ENST00000594973 TSPY26PQ9H489 355 aa20.13■□□□□ 0.81
SHKBP1-205ENST00000594973 GDPD2Q9HCC8 539 aa20.13■□□□□ 0.81
SHKBP1-205ENST00000594973 SPTLC3Q9NUV7 552 aa20.13■□□□□ 0.81
SHKBP1-205ENST00000594973 STOX1Q6ZVD7 989 aa20.13■□□□□ 0.81
SHKBP1-205ENST00000594973 FNBP4Q8N3X1 1017 aaPredicted RBP20.13■□□□□ 0.81
SHKBP1-205ENST00000594973 LRRC2Q9BYS8 371 aa20.13■□□□□ 0.81
SHKBP1-205ENST00000594973 NTSR2O95665 410 aa20.12■□□□□ 0.81
SHKBP1-205ENST00000594973 ZSCAN22P10073 491 aaPredicted RBP20.12■□□□□ 0.81
SHKBP1-205ENST00000594973 LRRFIP1Q32MZ4 808 aaKnown RBP20.12■□□□□ 0.81
SHKBP1-205ENST00000594973 TICAM2Q86XR7 235 aa20.12■□□□□ 0.81
SHKBP1-205ENST00000594973 PHKA1P46020 1223 aa20.11■□□□□ 0.81
SHKBP1-205ENST00000594973 PUM3Q15397 648 aaKnown RBP20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 126.7 ms