RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 SCN9AQ15858 1988 aa19.22■□□□□ 0.67
TRIM28-203ENST00000593582 KLRK1P26718 216 aa19.21■□□□□ 0.67
TRIM28-203ENST00000593582 BRPF1P55201 1214 aaPredicted RBP19.21■□□□□ 0.67
TRIM28-203ENST00000593582 FMR1Q06787 632 aaKnown RBP eCLIP19.21■□□□□ 0.676e-11■■■■□ 22.1
TRIM28-203ENST00000593582 KIF4BQ2VIQ3 1234 aa19.21■□□□□ 0.67
TRIM28-203ENST00000593582 CDC37L1Q7L3B6 337 aa19.21■□□□□ 0.67
TRIM28-203ENST00000593582 FBXW7Q969H0 707 aa19.21■□□□□ 0.67
TRIM28-203ENST00000593582 GLIS2Q9BZE0 524 aaPredicted RBP19.21■□□□□ 0.67
TRIM28-203ENST00000593582 USP44Q9H0E7 712 aa19.21■□□□□ 0.67
TRIM28-203ENST00000593582 EGFRP00533 1210 aa19.2■□□□□ 0.66
TRIM28-203ENST00000593582 USP17L8P0C7I0 530 aa19.2■□□□□ 0.66
TRIM28-203ENST00000593582 RARSP54136 660 aaKnown RBP19.2■□□□□ 0.66
TRIM28-203ENST00000593582 ZNF280AP59817 542 aaPredicted RBP19.2■□□□□ 0.66
TRIM28-203ENST00000593582 HNRNPUQ00839 825 aaKnown RBP eCLIP19.2■□□□□ 0.66
TRIM28-203ENST00000593582 RABL6Q3YEC7 729 aaPredicted RBP19.2■□□□□ 0.66
TRIM28-203ENST00000593582 STRIP1Q5VSL9 837 aa19.2■□□□□ 0.66
TRIM28-203ENST00000593582 GMLQ99445 158 aa19.2■□□□□ 0.66
TRIM28-203ENST00000593582 API5Q9BZZ5 524 aaKnown RBP19.2■□□□□ 0.66
TRIM28-203ENST00000593582 RASSF10A6NK89 507 aa19.19■□□□□ 0.66
TRIM28-203ENST00000593582 SNAP23O00161 211 aa19.19■□□□□ 0.66
TRIM28-203ENST00000593582 PLIN1O60240 522 aa19.19■□□□□ 0.66
TRIM28-203ENST00000593582 DEFB115Q30KQ5 88 aa19.19■□□□□ 0.66
TRIM28-203ENST00000593582 DACT2Q5SW24 774 aa19.19■□□□□ 0.66
TRIM28-203ENST00000593582 CST9Q5W186 159 aa19.19■□□□□ 0.66
TRIM28-203ENST00000593582 DCPSQ96C86 337 aaKnown RBP19.19■□□□□ 0.66
TRIM28-203ENST00000593582 MYO3BQ8WXR4 1341 aa19.19■□□□□ 0.66
TRIM28-203ENST00000593582 CELF2O95319 508 aaKnown RBP19.18■□□□□ 0.66
TRIM28-203ENST00000593582 TTLL5Q6EMB2 1281 aa19.18■□□□□ 0.66
TRIM28-203ENST00000593582 C15orf52Q6ZUT6 534 aaKnown RBP19.18■□□□□ 0.66
TRIM28-203ENST00000593582 USP48Q86UV5 1035 aa19.18■□□□□ 0.66
TRIM28-203ENST00000593582 OGFOD1Q8N543 542 aa19.18■□□□□ 0.66
TRIM28-203ENST00000593582 ANKRD44Q8N8A2 993 aa19.18■□□□□ 0.66
TRIM28-203ENST00000593582 KIF16BQ96L93 1317 aa19.18■□□□□ 0.66
TRIM28-203ENST00000593582 VEGFBP49765 207 aa19.17■□□□□ 0.66
TRIM28-203ENST00000593582 KRT26Q7Z3Y9 468 aa19.17■□□□□ 0.66
TRIM28-203ENST00000593582 ZNF804AQ7Z570 1209 aa19.17■□□□□ 0.66
TRIM28-203ENST00000593582 CD209Q9NNX6 404 aa19.17■□□□□ 0.66
TRIM28-203ENST00000593582 MYOZ2Q9NPC6 264 aa19.17■□□□□ 0.66
TRIM28-203ENST00000593582 ARHGAP45Q92619 1136 aa19.16■□□□□ 0.66
TRIM28-203ENST00000593582 MXD3Q9BW11 206 aa19.16■□□□□ 0.66
TRIM28-203ENST00000593582 ZNF408Q9H9D4 720 aa19.16■□□□□ 0.66
TRIM28-203ENST00000593582 MROH5Q6ZUA9 1318 aa19.16■□□□□ 0.66
TRIM28-203ENST00000593582 IRS2Q9Y4H2 1338 aa19.16■□□□□ 0.66
TRIM28-203ENST00000593582 GTF2IP78347 998 aa19.15■□□□□ 0.66
TRIM28-203ENST00000593582 UBE4AQ14139 1066 aa19.15■□□□□ 0.66
TRIM28-203ENST00000593582 SCARF1Q14162 830 aa19.15■□□□□ 0.66
TRIM28-203ENST00000593582 SULF1Q8IWU6 871 aa19.15■□□□□ 0.66
TRIM28-203ENST00000593582 PUS3Q9BZE2 481 aaKnown RBP19.15■□□□□ 0.66
TRIM28-203ENST00000593582 GGA3Q9NZ52 723 aa19.15■□□□□ 0.66
TRIM28-203ENST00000593582 RIPOR2Q9Y4F9 1068 aa19.15■□□□□ 0.66
TRIM28-203ENST00000593582 TLL2Q9Y6L7 1015 aa19.15■□□□□ 0.66
TRIM28-203ENST00000593582 PSME4Q14997 1843 aa19.15■□□□□ 0.66
TRIM28-203ENST00000593582 UBTFL1P0CB47 393 aaPredicted RBP19.14■□□□□ 0.65
TRIM28-203ENST00000593582 HSPA1AP0DMV8 641 aaKnown RBP19.14■□□□□ 0.65
TRIM28-203ENST00000593582 HSPA1BP0DMV9 641 aaKnown RBP19.14■□□□□ 0.65
TRIM28-203ENST00000593582 MMP14P50281 582 aa19.14■□□□□ 0.65
TRIM28-203ENST00000593582 PAXIP1Q6ZW49 1069 aaPredicted RBP19.14■□□□□ 0.65
TRIM28-203ENST00000593582 HDAC5Q9UQL6 1122 aa19.14■□□□□ 0.65
TRIM28-203ENST00000593582 IPO8O15397 1037 aaKnown RBP19.13■□□□□ 0.65
TRIM28-203ENST00000593582 IL1R1P14778 569 aa19.13■□□□□ 0.65
TRIM28-203ENST00000593582 ECE1P42892 770 aa19.13■□□□□ 0.65
TRIM28-203ENST00000593582 ASTN2O75129 1339 aaPredicted RBP19.12■□□□□ 0.65
TRIM28-203ENST00000593582 WDR33Q9C0J8 1336 aaKnown RBP19.12■□□□□ 0.65
TRIM28-203ENST00000593582 ADM5C9JUS6 153 aa19.12■□□□□ 0.65
TRIM28-203ENST00000593582 LRRC24Q50LG9 513 aa19.12■□□□□ 0.65
TRIM28-203ENST00000593582 METTL24Q5JXM2 366 aa19.12■□□□□ 0.65
TRIM28-203ENST00000593582 ANGEL2Q5VTE6 544 aaKnown RBP19.12■□□□□ 0.65
TRIM28-203ENST00000593582 SAPCD2Q86UD0 394 aa19.12■□□□□ 0.65
TRIM28-203ENST00000593582 HDAC9Q9UKV0 1011 aa19.12■□□□□ 0.65
TRIM28-203ENST00000593582 TRPM7Q96QT4 1865 aa19.11■□□□□ 0.65
TRIM28-203ENST00000593582 DLK2Q6UY11 383 aa19.11■□□□□ 0.65
TRIM28-203ENST00000593582 KIAA0825Q8IV33 1275 aa19.11■□□□□ 0.65
TRIM28-203ENST00000593582 KLHDC4Q8TBB5 520 aa19.11■□□□□ 0.65
TRIM28-203ENST00000593582 PITPNM2Q9BZ72 1349 aa19.1■□□□□ 0.65
TRIM28-203ENST00000593582 INTS3Q68E01 1043 aaKnown RBP19.1■□□□□ 0.65
TRIM28-203ENST00000593582 FRAT1Q92837 279 aaPredicted RBP19.1■□□□□ 0.65
TRIM28-203ENST00000593582 HHIPL1Q96JK4 782 aa19.1■□□□□ 0.65
TRIM28-203ENST00000593582 CAPNS2Q96L46 248 aa19.1■□□□□ 0.65
TRIM28-203ENST00000593582 A0A1B0GUL6 1792 aa19.1■□□□□ 0.65
TRIM28-203ENST00000593582 BCAR3O75815 825 aa19.09■□□□□ 0.65
TRIM28-203ENST00000593582 SASH1O94885 1247 aa19.09■□□□□ 0.65
TRIM28-203ENST00000593582 PDE8BO95263 885 aa19.09■□□□□ 0.65
TRIM28-203ENST00000593582 HIBADHP31937 336 aaKnown RBP19.09■□□□□ 0.65
TRIM28-203ENST00000593582 GYG1P46976 350 aa19.09■□□□□ 0.65
TRIM28-203ENST00000593582 GRM1Q13255 1194 aa19.09■□□□□ 0.65
TRIM28-203ENST00000593582 NBPF9Q3BBW0 867 aa19.09■□□□□ 0.65
TRIM28-203ENST00000593582 CYP4F22Q6NT55 531 aa19.09■□□□□ 0.65
TRIM28-203ENST00000593582 VPS37DQ86XT2 251 aa19.09■□□□□ 0.65
TRIM28-203ENST00000593582 WNT10BO00744 389 aa19.08■□□□□ 0.64
TRIM28-203ENST00000593582 TRIM27P14373 513 aa19.08■□□□□ 0.64
TRIM28-203ENST00000593582 ATF7IPQ6VMQ6 1270 aa19.08■□□□□ 0.64
TRIM28-203ENST00000593582 VGLL2Q8N8G2 317 aa19.08■□□□□ 0.64
TRIM28-203ENST00000593582 C2orf69Q8N8R5 385 aa19.08■□□□□ 0.64
TRIM28-203ENST00000593582 AIDAQ96BJ3 306 aa19.08■□□□□ 0.64
TRIM28-203ENST00000593582 FAM84BQ96KN1 310 aaPredicted RBP19.08■□□□□ 0.64
TRIM28-203ENST00000593582 MEIS3Q99687 375 aa19.08■□□□□ 0.64
TRIM28-203ENST00000593582 GBA2Q9HCG7 927 aaPredicted RBP19.08■□□□□ 0.64
TRIM28-203ENST00000593582 LRRFIP2Q9Y608 721 aaKnown RBP19.08■□□□□ 0.64
TRIM28-203ENST00000593582 ZBED9Q6R2W3 1325 aa19.07■□□□□ 0.64
TRIM28-203ENST00000593582 EYA2O00167 538 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms