RNA–Protein interactions for RNA: ENST00000585163.5

CDK5RAP3-237, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,519 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-237ENST00000585163 DDX17Q92841 729 aaKnown RBP16.67■□□□□ 0.26
CDK5RAP3-237ENST00000585163 LRMPQ12912 555 aa16.66■□□□□ 0.26
CDK5RAP3-237ENST00000585163 IQCB1Q15051 598 aa16.66■□□□□ 0.26
CDK5RAP3-237ENST00000585163 CCAR1Q8IX12 1150 aaKnown RBP16.66■□□□□ 0.26
CDK5RAP3-237ENST00000585163 CABLES1Q8TDN4 633 aa16.66■□□□□ 0.26
CDK5RAP3-237ENST00000585163 ZNF274Q96GC6 653 aaPredicted RBP16.66■□□□□ 0.26
CDK5RAP3-237ENST00000585163 CCDC94Q9BW85 323 aaPredicted RBP16.66■□□□□ 0.26
CDK5RAP3-237ENST00000585163 MAST3O60307 1309 aa16.66■□□□□ 0.26
CDK5RAP3-237ENST00000585163 NUP188Q5SRE5 1749 aa16.66■□□□□ 0.26
CDK5RAP3-237ENST00000585163 EYA2O00167 538 aa16.66■□□□□ 0.26
CDK5RAP3-237ENST00000585163 RIOK3O14730 519 aaKnown RBP16.66■□□□□ 0.26
CDK5RAP3-237ENST00000585163 CDC25BP30305 580 aa16.66■□□□□ 0.26
CDK5RAP3-237ENST00000585163 CCT2P78371 535 aaKnown RBP16.66■□□□□ 0.26
CDK5RAP3-237ENST00000585163 SNW1Q13573 536 aaKnown RBP16.66■□□□□ 0.26
CDK5RAP3-237ENST00000585163 TTLL7Q6ZT98 887 aa16.66■□□□□ 0.26
CDK5RAP3-237ENST00000585163 USP28Q96RU2 1077 aa16.66■□□□□ 0.26
CDK5RAP3-237ENST00000585163 FTOQ9C0B1 505 aaKnown RBP eCLIP16.66■□□□□ 0.26
CDK5RAP3-237ENST00000585163 TJP1Q07157 1748 aa16.66■□□□□ 0.26
CDK5RAP3-237ENST00000585163 SPEF2Q9C093 1822 aa16.65■□□□□ 0.26
CDK5RAP3-237ENST00000585163 A0A0G2JLW4 131 aa16.65■□□□□ 0.26
CDK5RAP3-237ENST00000585163 RNF113AO15541 343 aaKnown RBP16.65■□□□□ 0.26
CDK5RAP3-237ENST00000585163 PDIA3P30101 505 aaKnown RBP16.65■□□□□ 0.26
CDK5RAP3-237ENST00000585163 SARM1Q6SZW1 724 aa16.65■□□□□ 0.26
CDK5RAP3-237ENST00000585163 BCL2L12Q9HB09 334 aa16.65■□□□□ 0.26
CDK5RAP3-237ENST00000585163 ATG3Q9NT62 314 aa16.65■□□□□ 0.26
CDK5RAP3-237ENST00000585163 IFIT1P09914 478 aaKnown RBP16.65■□□□□ 0.26
CDK5RAP3-237ENST00000585163 LRRC24Q50LG9 513 aa16.65■□□□□ 0.26
CDK5RAP3-237ENST00000585163 FBXL16Q8N461 479 aa16.65■□□□□ 0.26
CDK5RAP3-237ENST00000585163 ZNF396Q96N95 335 aaPredicted RBP16.65■□□□□ 0.26
CDK5RAP3-237ENST00000585163 GOLPH3LQ9H4A5 285 aa16.65■□□□□ 0.26
CDK5RAP3-237ENST00000585163 NCOA5Q9HCD5 579 aaKnown RBP16.65■□□□□ 0.26
CDK5RAP3-237ENST00000585163 CLIP2Q9UDT6 1046 aa16.65■□□□□ 0.26
CDK5RAP3-237ENST00000585163 CIAO1O76071 339 aa16.64■□□□□ 0.25
CDK5RAP3-237ENST00000585163 ATF3P18847 181 aa16.64■□□□□ 0.25
CDK5RAP3-237ENST00000585163 STX1AQ16623 288 aa16.64■□□□□ 0.25
CDK5RAP3-237ENST00000585163 CCDC191Q8NCU4 936 aa16.64■□□□□ 0.25
CDK5RAP3-237ENST00000585163 ENGASEQ8NFI3 743 aa16.64■□□□□ 0.25
CDK5RAP3-237ENST00000585163 CHMP4CQ96CF2 233 aa16.64■□□□□ 0.25
CDK5RAP3-237ENST00000585163 A0A1B0GUL7 405 aa16.64■□□□□ 0.25
CDK5RAP3-237ENST00000585163 TRHP20396 242 aaPredicted RBP16.64■□□□□ 0.25
CDK5RAP3-237ENST00000585163 FOSBP53539 338 aa16.64■□□□□ 0.25
CDK5RAP3-237ENST00000585163 CCDC73Q6ZRK6 1079 aa16.64■□□□□ 0.25
CDK5RAP3-237ENST00000585163 C11orf57Q6ZUT1 292 aaPredicted RBP16.64■□□□□ 0.25
CDK5RAP3-237ENST00000585163 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.64■□□□□ 0.25
CDK5RAP3-237ENST00000585163 FAM177BA6PVY3 158 aa16.63■□□□□ 0.25
CDK5RAP3-237ENST00000585163 GOLGA6L19H0YKK7 550 aa16.63■□□□□ 0.25
CDK5RAP3-237ENST00000585163 CTIFO43310 598 aaKnown RBP16.63■□□□□ 0.25
CDK5RAP3-237ENST00000585163 EVCP57679 992 aa16.63■□□□□ 0.25
CDK5RAP3-237ENST00000585163 FAM160A1Q05DH4 1040 aa16.63■□□□□ 0.25
CDK5RAP3-237ENST00000585163 ILDR1Q86SU0 546 aaPredicted RBP16.63■□□□□ 0.25
CDK5RAP3-237ENST00000585163 CACTINQ8WUQ7 758 aaKnown RBP16.63■□□□□ 0.25
CDK5RAP3-237ENST00000585163 MRFAP1L1Q96HT8 127 aa16.63■□□□□ 0.25
CDK5RAP3-237ENST00000585163 ZNF594Q96JF6 807 aaPredicted RBP16.63■□□□□ 0.25
CDK5RAP3-237ENST00000585163 ARID3AQ99856 593 aa16.63■□□□□ 0.25
CDK5RAP3-237ENST00000585163 CARMIL3Q8ND23 1372 aa16.63■□□□□ 0.25
CDK5RAP3-237ENST00000585163 TNS3Q68CZ2 1445 aa16.63■□□□□ 0.25
CDK5RAP3-237ENST00000585163 M0R2C6 588 aa16.62■□□□□ 0.25
CDK5RAP3-237ENST00000585163 KINO60870 393 aaKnown RBP16.62■□□□□ 0.25
CDK5RAP3-237ENST00000585163 CCDC144BQ3MJ40 725 aa16.62■□□□□ 0.25
CDK5RAP3-237ENST00000585163 CCDC144CPQ8IYA2 1237 aa16.62■□□□□ 0.25
CDK5RAP3-237ENST00000585163 UBR2Q8IWV8 1755 aa16.62■□□□□ 0.25
CDK5RAP3-237ENST00000585163 CHST3Q7LGC8 479 aa16.62■□□□□ 0.25
CDK5RAP3-237ENST00000585163 CPDO75976 1380 aa16.62■□□□□ 0.25
CDK5RAP3-237ENST00000585163 FDPSP14324 419 aaKnown RBP16.61■□□□□ 0.25
CDK5RAP3-237ENST00000585163 TTLL5Q6EMB2 1281 aa16.61■□□□□ 0.25
CDK5RAP3-237ENST00000585163 OSBP2Q969R2 916 aa16.61■□□□□ 0.25
CDK5RAP3-237ENST00000585163 NAP1L2Q9ULW6 460 aaPredicted RBP16.61■□□□□ 0.25
CDK5RAP3-237ENST00000585163 A1BGP04217 495 aa16.61■□□□□ 0.25
CDK5RAP3-237ENST00000585163 ME1P48163 572 aa16.61■□□□□ 0.25
CDK5RAP3-237ENST00000585163 ZBTB3Q9H5J0 574 aa16.61■□□□□ 0.25
CDK5RAP3-237ENST00000585163 DCCP43146 1447 aa16.6■□□□□ 0.25
CDK5RAP3-237ENST00000585163 GUCY1B3Q02153 619 aa16.6■□□□□ 0.25
CDK5RAP3-237ENST00000585163 C16orf45Q96MC5 204 aaPredicted RBP16.6■□□□□ 0.25
CDK5RAP3-237ENST00000585163 PUS3Q9BZE2 481 aaKnown RBP16.6■□□□□ 0.25
CDK5RAP3-237ENST00000585163 ANO10Q9NW15 660 aa16.6■□□□□ 0.25
CDK5RAP3-237ENST00000585163 PCDH11XQ9BZA7 1347 aa16.6■□□□□ 0.25
CDK5RAP3-237ENST00000585163 PCDH11YQ9BZA8 1340 aa16.6■□□□□ 0.25
CDK5RAP3-237ENST00000585163 ERVV-2B6SEH9 535 aa16.6■□□□□ 0.25
CDK5RAP3-237ENST00000585163 PPFIA3O75145 1194 aa16.6■□□□□ 0.25
CDK5RAP3-237ENST00000585163 DHX40Q8IX18 779 aaKnown RBP16.6■□□□□ 0.25
CDK5RAP3-237ENST00000585163 FSIP1Q8NA03 581 aa16.6■□□□□ 0.25
CDK5RAP3-237ENST00000585163 ANKRD7Q92527 254 aa16.6■□□□□ 0.25
CDK5RAP3-237ENST00000585163 RTEL1Q9NZ71 1219 aa16.6■□□□□ 0.25
CDK5RAP3-237ENST00000585163 CEP126Q9P2H0 1117 aa16.6■□□□□ 0.25
CDK5RAP3-237ENST00000585163 CTNNA3Q9UI47 895 aa16.6■□□□□ 0.25
CDK5RAP3-237ENST00000585163 KCPQ6ZWJ8 1503 aa16.6■□□□□ 0.25
CDK5RAP3-237ENST00000585163 LRRFIP1Q32MZ4 808 aaKnown RBP16.59■□□□□ 0.25
CDK5RAP3-237ENST00000585163 LRRC8AQ8IWT6 810 aa16.59■□□□□ 0.25
CDK5RAP3-237ENST00000585163 BECN2A8MW95 431 aa16.59■□□□□ 0.25
CDK5RAP3-237ENST00000585163 FOXP2O15409 715 aa16.59■□□□□ 0.25
CDK5RAP3-237ENST00000585163 NEMFO60524 1076 aa16.59■□□□□ 0.25
CDK5RAP3-237ENST00000585163 FKBP4Q02790 459 aaKnown RBP eCLIP16.59■□□□□ 0.25
CDK5RAP3-237ENST00000585163 ADALQ6DHV7 355 aa16.59■□□□□ 0.25
CDK5RAP3-237ENST00000585163 SMAP1Q8IYB5 467 aaPredicted RBP16.59■□□□□ 0.25
CDK5RAP3-237ENST00000585163 PCDHA7Q9UN72 937 aa16.59■□□□□ 0.25
CDK5RAP3-237ENST00000585163 SPATA31A3Q5VYP0 1347 aa16.58■□□□□ 0.25
CDK5RAP3-237ENST00000585163 ZFYP08048 801 aaPredicted RBP16.58■□□□□ 0.25
CDK5RAP3-237ENST00000585163 CCDC158Q5M9N0 1113 aa16.58■□□□□ 0.25
CDK5RAP3-237ENST00000585163 FMR1NBQ8N0W7 255 aaPredicted RBP16.58■□□□□ 0.25
CDK5RAP3-237ENST00000585163 ZCRB1Q8TBF4 217 aaKnown RBP16.58■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms