RNA–Protein interactions for RNA: ENST00000580986.1

CCDC47-203, Transcript of coiled-coil domain containing 47, humanhuman

TSL 4

Gene CCDC47, Length 552 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-203ENST00000580986 PSMD1Q99460 953 aa12.86□□□□□ -0.35
CCDC47-203ENST00000580986 PUS3Q9BZE2 481 aaKnown RBP12.86□□□□□ -0.35
CCDC47-203ENST00000580986 PPP4R2Q9NY27 417 aa12.86□□□□□ -0.35
CCDC47-203ENST00000580986 LEMD3Q9Y2U8 911 aa12.86□□□□□ -0.35
CCDC47-203ENST00000580986 UBE4AQ14139 1066 aa12.85□□□□□ -0.35
CCDC47-203ENST00000580986 C15orf52Q6ZUT6 534 aaKnown RBP12.85□□□□□ -0.35
CCDC47-203ENST00000580986 SUPT20HQ8NEM7 779 aa12.85□□□□□ -0.35
CCDC47-203ENST00000580986 SIL1Q9H173 461 aa12.85□□□□□ -0.35
CCDC47-203ENST00000580986 PLSCR2Q9NRY7 297 aa12.85□□□□□ -0.35
CCDC47-203ENST00000580986 CEP126Q9P2H0 1117 aa12.85□□□□□ -0.35
CCDC47-203ENST00000580986 BCS1LQ9Y276 419 aa12.85□□□□□ -0.35
CCDC47-203ENST00000580986 AKAP2Q9Y2D5 859 aa12.85□□□□□ -0.35
CCDC47-203ENST00000580986 KDM2BQ8NHM5 1336 aa12.85□□□□□ -0.35
CCDC47-203ENST00000580986 C21orf2O43822 256 aa12.84□□□□□ -0.35
CCDC47-203ENST00000580986 SASH1O94885 1247 aa12.84□□□□□ -0.35
CCDC47-203ENST00000580986 FGFR2P21802 821 aa12.84□□□□□ -0.35
CCDC47-203ENST00000580986 ATP2B4P23634 1241 aa12.84□□□□□ -0.35
CCDC47-203ENST00000580986 PUM3Q15397 648 aaKnown RBP12.84□□□□□ -0.35
CCDC47-203ENST00000580986 METTL24Q5JXM2 366 aa12.84□□□□□ -0.35
CCDC47-203ENST00000580986 MPNDQ8N594 471 aa12.84□□□□□ -0.35
CCDC47-203ENST00000580986 RHPN1Q8TCX5 695 aa12.84□□□□□ -0.35
CCDC47-203ENST00000580986 LRRCC1Q9C099 1032 aa12.84□□□□□ -0.35
CCDC47-203ENST00000580986 EXOC6BQ9Y2D4 811 aa12.84□□□□□ -0.35
CCDC47-203ENST00000580986 ZNF609O15014 1411 aa12.84□□□□□ -0.35
CCDC47-203ENST00000580986 MED23Q9ULK4 1368 aa12.83□□□□□ -0.36
CCDC47-203ENST00000580986 IGHDP01880 384 aa12.83□□□□□ -0.36
CCDC47-203ENST00000580986 FKBP4Q02790 459 aaKnown RBP eCLIP12.83□□□□□ -0.36
CCDC47-203ENST00000580986 OS9Q13438 667 aaPredicted RBP12.83□□□□□ -0.36
CCDC47-203ENST00000580986 DPP8Q6V1X1 898 aaPredicted RBP12.83□□□□□ -0.36
CCDC47-203ENST00000580986 CENPQQ7L2Z9 268 aaPredicted RBP12.83□□□□□ -0.36
CCDC47-203ENST00000580986 LPIN2Q92539 896 aa12.83□□□□□ -0.36
CCDC47-203ENST00000580986 ANKIB1Q9P2G1 1089 aa12.83□□□□□ -0.36
CCDC47-203ENST00000580986 GGA1Q9UJY5 639 aa12.83□□□□□ -0.36
CCDC47-203ENST00000580986 NSFL1CQ9UNZ2 370 aaKnown RBP12.83□□□□□ -0.36
CCDC47-203ENST00000580986 GRIN3BO60391 1043 aa12.82□□□□□ -0.36
CCDC47-203ENST00000580986 GPSM2P81274 684 aa12.82□□□□□ -0.36
CCDC47-203ENST00000580986 TBC1D16Q8TBP0 767 aa12.82□□□□□ -0.36
CCDC47-203ENST00000580986 KIF12Q96FN5 646 aa12.82□□□□□ -0.36
CCDC47-203ENST00000580986 CCDC136Q96JN2 1154 aa12.82□□□□□ -0.36
CCDC47-203ENST00000580986 EYA3Q99504 573 aa12.82□□□□□ -0.36
CCDC47-203ENST00000580986 ZNF804BA4D1E1 1349 aa12.82□□□□□ -0.36
CCDC47-203ENST00000580986 IRS2Q9Y4H2 1338 aa12.82□□□□□ -0.36
CCDC47-203ENST00000580986 TFCP2Q12800 502 aa12.81□□□□□ -0.36
CCDC47-203ENST00000580986 CLASRPQ8N2M8 674 aaKnown RBP12.81□□□□□ -0.36
CCDC47-203ENST00000580986 TAOK3Q9H2K8 898 aa12.81□□□□□ -0.36
CCDC47-203ENST00000580986 DICER1Q9UPY3 1922 aaKnown RBP12.8□□□□□ -0.36
CCDC47-203ENST00000580986 NFKBIEO00221 500 aa12.8□□□□□ -0.36
CCDC47-203ENST00000580986 UFL1O94874 794 aa12.8□□□□□ -0.36
CCDC47-203ENST00000580986 IFIT1P09914 478 aaKnown RBP12.8□□□□□ -0.36
CCDC47-203ENST00000580986 SLC5A1P13866 664 aa12.8□□□□□ -0.36
CCDC47-203ENST00000580986 YBX3P16989 372 aaKnown RBP eCLIP12.8□□□□□ -0.36
CCDC47-203ENST00000580986 NUCB1Q02818 461 aa12.8□□□□□ -0.36
CCDC47-203ENST00000580986 KIAA2012Q0VF49 1180 aa12.8□□□□□ -0.36
CCDC47-203ENST00000580986 ATP2B3Q16720 1220 aa12.8□□□□□ -0.36
CCDC47-203ENST00000580986 TNNI3KQ59H18 835 aa12.8□□□□□ -0.36
CCDC47-203ENST00000580986 POLLQ9UGP5 575 aa12.8□□□□□ -0.36
CCDC47-203ENST00000580986 FPGT-TNNI3KV9GXZ4 949 aa12.8□□□□□ -0.36
CCDC47-203ENST00000580986 SBF1O95248 1867 aa12.79□□□□□ -0.36
CCDC47-203ENST00000580986 A0A1B0GUL7 405 aa12.79□□□□□ -0.36
CCDC47-203ENST00000580986 TAF5LO75529 589 aa12.79□□□□□ -0.36
CCDC47-203ENST00000580986 KCNJ4P48050 445 aa12.79□□□□□ -0.36
CCDC47-203ENST00000580986 OLFM4Q6UX06 510 aa12.79□□□□□ -0.36
CCDC47-203ENST00000580986 UTRNP46939 3433 aa12.79□□□□□ -0.36
CCDC47-203ENST00000580986 ATN1P54259 1190 aaPredicted RBP12.78□□□□□ -0.36
CCDC47-203ENST00000580986 WASHC4Q2M389 1173 aa12.78□□□□□ -0.36
CCDC47-203ENST00000580986 CHD1LQ86WJ1 897 aa12.78□□□□□ -0.36
CCDC47-203ENST00000580986 HELBQ8NG08 1087 aaPredicted RBP12.78□□□□□ -0.36
CCDC47-203ENST00000580986 EAF2Q96CJ1 260 aaPredicted RBP12.78□□□□□ -0.36
CCDC47-203ENST00000580986 ZNF512BQ96KM6 892 aaPredicted RBP12.78□□□□□ -0.36
CCDC47-203ENST00000580986 ZBTB47Q9UFB7 747 aaPredicted RBP12.78□□□□□ -0.36
CCDC47-203ENST00000580986 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.78□□□□□ -0.36
CCDC47-203ENST00000580986 ZC3H4Q9UPT8 1303 aaKnown RBP12.78□□□□□ -0.36
CCDC47-203ENST00000580986 PSME4Q14997 1843 aa12.78□□□□□ -0.36
CCDC47-203ENST00000580986 C6orf229H3BNL8 230 aa12.77□□□□□ -0.37
CCDC47-203ENST00000580986 IARSP41252 1262 aaKnown RBP12.77□□□□□ -0.37
CCDC47-203ENST00000580986 GPR162Q16538 588 aa12.77□□□□□ -0.37
CCDC47-203ENST00000580986 CAVIN4Q5BKX8 364 aa12.77□□□□□ -0.37
CCDC47-203ENST00000580986 FBXO33Q7Z6M2 555 aa12.77□□□□□ -0.37
CCDC47-203ENST00000580986 SLC51AQ86UW1 340 aa12.77□□□□□ -0.37
CCDC47-203ENST00000580986 ZC3H12CQ9C0D7 883 aaKnown RBP12.77□□□□□ -0.37
CCDC47-203ENST00000580986 COA1Q9GZY4 146 aa12.77□□□□□ -0.37
CCDC47-203ENST00000580986 PDS5AQ29RF7 1337 aaKnown RBP12.77□□□□□ -0.37
CCDC47-203ENST00000580986 SALL3Q9BXA9 1300 aa12.77□□□□□ -0.37
CCDC47-203ENST00000580986 SEMA3EO15041 775 aa12.76□□□□□ -0.37
CCDC47-203ENST00000580986 IL1R1P14778 569 aa12.76□□□□□ -0.37
CCDC47-203ENST00000580986 LMNB1P20700 586 aa12.76□□□□□ -0.37
CCDC47-203ENST00000580986 TIMM10P62072 90 aa12.76□□□□□ -0.37
CCDC47-203ENST00000580986 ANKRD45Q5TZF3 282 aa12.76□□□□□ -0.37
CCDC47-203ENST00000580986 MAMSTRQ6ZN01 415 aa12.76□□□□□ -0.37
CCDC47-203ENST00000580986 ZNF804AQ7Z570 1209 aa12.76□□□□□ -0.37
CCDC47-203ENST00000580986 PODNQ7Z5L7 613 aa12.76□□□□□ -0.37
CCDC47-203ENST00000580986 RASEFQ8IZ41 740 aa12.76□□□□□ -0.37
CCDC47-203ENST00000580986 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.76□□□□□ -0.37
CCDC47-203ENST00000580986 XAGE2Q96GT9 111 aa12.76□□□□□ -0.37
CCDC47-203ENST00000580986 IL1RAPL2Q9NP60 686 aa12.76□□□□□ -0.37
CCDC47-203ENST00000580986 DBNLQ9UJU6 430 aaKnown RBP12.76□□□□□ -0.37
CCDC47-203ENST00000580986 PPIP5K2O43314 1243 aa12.75□□□□□ -0.37
CCDC47-203ENST00000580986 IGSF3O75054 1194 aa12.75□□□□□ -0.37
CCDC47-203ENST00000580986 IFIT2P09913 472 aaKnown RBP12.75□□□□□ -0.37
CCDC47-203ENST00000580986 ARID4AP29374 1257 aaPredicted RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms