RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 PSMD14O00487 310 aa11.54□□□□□ -0.56
VPS35-206ENST00000565228 EGFRP00533 1210 aa11.54□□□□□ -0.56
VPS35-206ENST00000565228 EPS15P42566 896 aa11.54□□□□□ -0.56
VPS35-206ENST00000565228 ATP8B2P98198 1209 aa11.54□□□□□ -0.56
VPS35-206ENST00000565228 CEP85Q6P2H3 762 aa11.54□□□□□ -0.56
VPS35-206ENST00000565228 L3MBTL3Q96JM7 780 aaPredicted RBP11.54□□□□□ -0.56
VPS35-206ENST00000565228 CNNM1Q9NRU3 951 aa11.54□□□□□ -0.56
VPS35-206ENST00000565228 LEMD3Q9Y2U8 911 aa11.54□□□□□ -0.56
VPS35-206ENST00000565228 SCN4AP35499 1836 aa11.53□□□□□ -0.56
VPS35-206ENST00000565228 SRGAP3O43295 1099 aa11.53□□□□□ -0.56
VPS35-206ENST00000565228 SASH1O94885 1247 aa11.53□□□□□ -0.56
VPS35-206ENST00000565228 GYG1P46976 350 aa11.53□□□□□ -0.56
VPS35-206ENST00000565228 GMPSP49915 693 aaPredicted RBP11.53□□□□□ -0.56
VPS35-206ENST00000565228 TAF7LQ5H9L4 462 aa11.53□□□□□ -0.56
VPS35-206ENST00000565228 C15orf52Q6ZUT6 534 aaKnown RBP11.53□□□□□ -0.56
VPS35-206ENST00000565228 SSH3Q8TE77 659 aa11.53□□□□□ -0.56
VPS35-206ENST00000565228 GJA3Q9Y6H8 435 aa11.53□□□□□ -0.56
VPS35-206ENST00000565228 ARAP2Q8WZ64 1704 aa11.52□□□□□ -0.56
VPS35-206ENST00000565228 COL1A1P02452 1464 aaPredicted RBP11.52□□□□□ -0.56
VPS35-206ENST00000565228 PDE8BO95263 885 aa11.52□□□□□ -0.57
VPS35-206ENST00000565228 KCNA4P22459 653 aa11.52□□□□□ -0.57
VPS35-206ENST00000565228 ADORA1P30542 326 aa11.52□□□□□ -0.57
VPS35-206ENST00000565228 HIRAP54198 1017 aaPredicted RBP11.52□□□□□ -0.57
VPS35-206ENST00000565228 PDE3AQ14432 1141 aa11.52□□□□□ -0.57
VPS35-206ENST00000565228 GRIK5Q16478 980 aa11.52□□□□□ -0.57
VPS35-206ENST00000565228 GPC2Q8N158 579 aa11.52□□□□□ -0.57
VPS35-206ENST00000565228 CERS5Q8N5B7 392 aa11.52□□□□□ -0.57
VPS35-206ENST00000565228 JDP2Q8WYK2 163 aa11.52□□□□□ -0.57
VPS35-206ENST00000565228 FAM84BQ96KN1 310 aaPredicted RBP11.52□□□□□ -0.57
VPS35-206ENST00000565228 GMLQ99445 158 aa11.52□□□□□ -0.57
VPS35-206ENST00000565228 EYA3Q99504 573 aa11.52□□□□□ -0.57
VPS35-206ENST00000565228 ZC3H12CQ9C0D7 883 aaKnown RBP11.52□□□□□ -0.57
VPS35-206ENST00000565228 ANKRD2Q9GZV1 360 aa11.52□□□□□ -0.57
VPS35-206ENST00000565228 CD209Q9NNX6 404 aa11.52□□□□□ -0.57
VPS35-206ENST00000565228 JAG2Q9Y219 1238 aa11.52□□□□□ -0.57
VPS35-206ENST00000565228 POLR2AP24928 1970 aaKnown RBP11.52□□□□□ -0.57
VPS35-206ENST00000565228 CIAO1O76071 339 aa11.51□□□□□ -0.57
VPS35-206ENST00000565228 VIL1P09327 827 aaKnown RBP11.51□□□□□ -0.57
VPS35-206ENST00000565228 EIF6P56537 245 aaKnown RBP11.51□□□□□ -0.57
VPS35-206ENST00000565228 TFCP2Q12800 502 aa11.51□□□□□ -0.57
VPS35-206ENST00000565228 METTL24Q5JXM2 366 aa11.51□□□□□ -0.57
VPS35-206ENST00000565228 DACT2Q5SW24 774 aa11.51□□□□□ -0.57
VPS35-206ENST00000565228 CIAPIN1Q6FI81 312 aa11.51□□□□□ -0.57
VPS35-206ENST00000565228 FBXO33Q7Z6M2 555 aa11.51□□□□□ -0.57
VPS35-206ENST00000565228 TRPM4Q8TD43 1214 aa11.51□□□□□ -0.57
VPS35-206ENST00000565228 CRBNQ96SW2 442 aa11.51□□□□□ -0.57
VPS35-206ENST00000565228 TMX4Q9H1E5 349 aaPredicted RBP11.51□□□□□ -0.57
VPS35-206ENST00000565228 TAF1DQ9H5J8 278 aaPredicted RBP11.51□□□□□ -0.57
VPS35-206ENST00000565228 PCDHAC2Q9Y5I4 1007 aa11.51□□□□□ -0.57
VPS35-206ENST00000565228 MROH5Q6ZUA9 1318 aa11.51□□□□□ -0.57
VPS35-206ENST00000565228 SLC34A2O95436 690 aa11.5□□□□□ -0.57
VPS35-206ENST00000565228 BCAMP50895 628 aa11.5□□□□□ -0.57
VPS35-206ENST00000565228 FMR1Q06787 632 aaKnown RBP eCLIP11.5□□□□□ -0.57
VPS35-206ENST00000565228 UBE4AQ14139 1066 aa11.5□□□□□ -0.57
VPS35-206ENST00000565228 DLK2Q6UY11 383 aa11.5□□□□□ -0.57
VPS35-206ENST00000565228 DNAJC5GQ8N7S2 189 aa11.5□□□□□ -0.57
VPS35-206ENST00000565228 GPRC5DQ9NZD1 345 aa11.5□□□□□ -0.57
VPS35-206ENST00000565228 IQSEC3Q9UPP2 1182 aaPredicted RBP11.5□□□□□ -0.57
VPS35-206ENST00000565228 PCDHB15Q9Y5E8 787 aa11.5□□□□□ -0.57
VPS35-206ENST00000565228 ASTN2O75129 1339 aaPredicted RBP11.5□□□□□ -0.57
VPS35-206ENST00000565228 AOX1Q06278 1338 aa11.5□□□□□ -0.57
VPS35-206ENST00000565228 KDM2BQ8NHM5 1336 aa11.5□□□□□ -0.57
VPS35-206ENST00000565228 IL1R1P14778 569 aa11.49□□□□□ -0.57
VPS35-206ENST00000565228 VEGFAP15692 232 aaPredicted RBP11.49□□□□□ -0.57
VPS35-206ENST00000565228 TIMM10P62072 90 aa11.49□□□□□ -0.57
VPS35-206ENST00000565228 DPY19L2Q6NUT2 758 aa11.49□□□□□ -0.57
VPS35-206ENST00000565228 TDRD7Q8NHU6 1098 aaKnown RBP11.49□□□□□ -0.57
VPS35-206ENST00000565228 COA1Q9GZY4 146 aa11.49□□□□□ -0.57
VPS35-206ENST00000565228 DDX19BQ9UMR2 479 aa11.49□□□□□ -0.57
VPS35-206ENST00000565228 NOP58Q9Y2X3 529 aaKnown RBP11.49□□□□□ -0.57
VPS35-206ENST00000565228 EPHX2P34913 555 aa11.48□□□□□ -0.57
VPS35-206ENST00000565228 IL15P40933 162 aaPredicted RBP11.48□□□□□ -0.57
VPS35-206ENST00000565228 GTF2IP78347 998 aa11.48□□□□□ -0.57
VPS35-206ENST00000565228 COL13A1Q5TAT6 717 aaPredicted RBP11.48□□□□□ -0.57
VPS35-206ENST00000565228 RSBN1LQ6PCB5 846 aaPredicted RBP11.48□□□□□ -0.57
VPS35-206ENST00000565228 SAMD7Q7Z3H4 446 aa11.48□□□□□ -0.57
VPS35-206ENST00000565228 PODNQ7Z5L7 613 aa11.48□□□□□ -0.57
VPS35-206ENST00000565228 EXOC6BQ9Y2D4 811 aa11.48□□□□□ -0.57
VPS35-206ENST00000565228 SUPT16HQ9Y5B9 1047 aaKnown RBP11.48□□□□□ -0.57
VPS35-206ENST00000565228 ZNF609O15014 1411 aa11.48□□□□□ -0.57
VPS35-206ENST00000565228 AKAP11Q9UKA4 1901 aa11.47□□□□□ -0.57
VPS35-206ENST00000565228 MYO5AQ9Y4I1 1855 aaKnown RBP11.47□□□□□ -0.57
VPS35-206ENST00000565228 USP17L3A6NCW0 530 aa11.47□□□□□ -0.57
VPS35-206ENST00000565228 USP17L4A6NCW7 530 aa11.47□□□□□ -0.57
VPS35-206ENST00000565228 PHKA1P46020 1223 aa11.47□□□□□ -0.57
VPS35-206ENST00000565228 KCNJ4P48050 445 aa11.47□□□□□ -0.57
VPS35-206ENST00000565228 PUM3Q15397 648 aaKnown RBP11.47□□□□□ -0.57
VPS35-206ENST00000565228 USP17L1Q7RTZ2 530 aa11.47□□□□□ -0.57
VPS35-206ENST00000565228 MICALL2Q8IY33 904 aa11.47□□□□□ -0.57
VPS35-206ENST00000565228 TLR7Q9NYK1 1049 aaKnown RBP11.47□□□□□ -0.57
VPS35-206ENST00000565228 CNOT7Q9UIV1 285 aaKnown RBP11.47□□□□□ -0.57
VPS35-206ENST00000565228 HACL1Q9UJ83 578 aa11.47□□□□□ -0.57
VPS35-206ENST00000565228 FBXO3Q9UK99 471 aa11.47□□□□□ -0.57
VPS35-206ENST00000565228 MYH13Q9UKX3 1938 aa11.47□□□□□ -0.57
VPS35-206ENST00000565228 SURF6O75683 361 aaKnown RBP11.46□□□□□ -0.57
VPS35-206ENST00000565228 TOMM70O94826 608 aa11.46□□□□□ -0.57
VPS35-206ENST00000565228 SCARF1Q14162 830 aa11.46□□□□□ -0.57
VPS35-206ENST00000565228 ATP2B3Q16720 1220 aa11.46□□□□□ -0.57
VPS35-206ENST00000565228 SCAF8Q9UPN6 1271 aaKnown RBP11.46□□□□□ -0.57
VPS35-206ENST00000565228 FAM205AQ6ZU69 1335 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms