RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 TBC1D2Q9BYX2 928 aa25.67■■□□□ 1.7
CLN3-209ENST00000561689 RAD50Q92878 1312 aa25.67■■□□□ 1.7
CLN3-209ENST00000561689 MCCP23508 829 aa25.67■■□□□ 1.7
CLN3-209ENST00000561689 PTH1RQ03431 593 aa25.67■■□□□ 1.7
CLN3-209ENST00000561689 SLC51AQ86UW1 340 aa25.67■■□□□ 1.7
CLN3-209ENST00000561689 UBE4AQ14139 1066 aa25.66■■□□□ 1.7
CLN3-209ENST00000561689 PALD1Q9ULE6 856 aa25.66■■□□□ 1.7
CLN3-209ENST00000561689 PARP3Q9Y6F1 533 aa25.66■■□□□ 1.7
CLN3-209ENST00000561689 ZNF589Q86UQ0 364 aaPredicted RBP25.65■■□□□ 1.7
CLN3-209ENST00000561689 SEC62Q99442 399 aaKnown RBP25.65■■□□□ 1.7
CLN3-209ENST00000561689 EPB41L2O43491 1005 aaKnown RBP25.65■■□□□ 1.7
CLN3-209ENST00000561689 RBM17Q96I25 401 aaKnown RBP25.65■■□□□ 1.7
CLN3-209ENST00000561689 ANKRD2Q9GZV1 360 aa25.65■■□□□ 1.7
CLN3-209ENST00000561689 HMG20BQ9P0W2 317 aa25.65■■□□□ 1.7
CLN3-209ENST00000561689 CYP2E1P05181 493 aaPredicted RBP25.64■■□□□ 1.7
CLN3-209ENST00000561689 RASGRF1Q13972 1273 aa25.64■■□□□ 1.7
CLN3-209ENST00000561689 MED23Q9ULK4 1368 aa25.64■■□□□ 1.69
CLN3-209ENST00000561689 HSPA4P34932 840 aa25.64■■□□□ 1.69
CLN3-209ENST00000561689 GYG1P46976 350 aa25.64■■□□□ 1.69
CLN3-209ENST00000561689 KCNJ4P48050 445 aa25.64■■□□□ 1.69
CLN3-209ENST00000561689 ILDR1Q86SU0 546 aaPredicted RBP25.64■■□□□ 1.69
CLN3-209ENST00000561689 KLRG2A4D1S0 409 aaPredicted RBP25.63■■□□□ 1.69
CLN3-209ENST00000561689 RNF113AO15541 343 aaKnown RBP25.63■■□□□ 1.69
CLN3-209ENST00000561689 CCDC129Q6ZRS4 1044 aa25.63■■□□□ 1.69
CLN3-209ENST00000561689 SPATA5Q8NB90 893 aa25.63■■□□□ 1.69
CLN3-209ENST00000561689 BRIP1Q9BX63 1249 aa25.63■■□□□ 1.69
CLN3-209ENST00000561689 CCDC171Q6TFL3 1326 aa25.62■■□□□ 1.69
CLN3-209ENST00000561689 RABEP1Q15276 862 aa25.62■■□□□ 1.69
CLN3-209ENST00000561689 MCMDC2Q4G0Z9 681 aa25.62■■□□□ 1.69
CLN3-209ENST00000561689 KLRK1P26718 216 aa25.62■■□□□ 1.69
CLN3-209ENST00000561689 PIH1D3Q9NQM4 214 aaKnown RBP25.62■■□□□ 1.69
CLN3-209ENST00000561689 ARAP2Q8WZ64 1704 aa25.61■■□□□ 1.69
CLN3-209ENST00000561689 HOXA10P31260 410 aaPredicted RBP25.61■■□□□ 1.69
CLN3-209ENST00000561689 TICAM2Q86XR7 235 aa25.61■■□□□ 1.69
CLN3-209ENST00000561689 PDGFDQ9GZP0 370 aaPredicted RBP25.61■■□□□ 1.69
CLN3-209ENST00000561689 IQSEC3Q9UPP2 1182 aaPredicted RBP25.61■■□□□ 1.69
CLN3-209ENST00000561689 CD2BP2O95400 341 aaKnown RBP25.6■■□□□ 1.69
CLN3-209ENST00000561689 ZMYM1Q5SVZ6 1142 aa25.6■■□□□ 1.69
CLN3-209ENST00000561689 ANKIB1Q9P2G1 1089 aa25.6■■□□□ 1.69
CLN3-209ENST00000561689 TTF1Q15361 905 aaPredicted RBP25.6■■□□□ 1.69
CLN3-209ENST00000561689 CAVIN4Q5BKX8 364 aa25.6■■□□□ 1.69
CLN3-209ENST00000561689 ZNF804BA4D1E1 1349 aa25.59■■□□□ 1.69
CLN3-209ENST00000561689 HSCBQ8IWL3 235 aa25.59■■□□□ 1.69
CLN3-209ENST00000561689 MAP4K1Q92918 833 aa25.59■■□□□ 1.69
CLN3-209ENST00000561689 SNX21Q969T3 373 aa25.59■■□□□ 1.69
CLN3-209ENST00000561689 FAM84BQ96KN1 310 aaPredicted RBP25.59■■□□□ 1.69
CLN3-209ENST00000561689 HELLSQ9NRZ9 838 aa25.59■■□□□ 1.69
CLN3-209ENST00000561689 ANAPC15P60006 121 aa25.58■■□□□ 1.69
CLN3-209ENST00000561689 LRRFIP1Q32MZ4 808 aaKnown RBP25.58■■□□□ 1.69
CLN3-209ENST00000561689 VPS37DQ86XT2 251 aa25.58■■□□□ 1.69
CLN3-209ENST00000561689 IDH1O75874 414 aaKnown RBP25.58■■□□□ 1.69
CLN3-209ENST00000561689 CRAMP1Q96RY5 1269 aa25.58■■□□□ 1.69
CLN3-209ENST00000561689 RBM8AQ9Y5S9 174 aaKnown RBP25.58■■□□□ 1.69
CLN3-209ENST00000561689 BBOX1O75936 387 aa25.57■■□□□ 1.68
CLN3-209ENST00000561689 ZFYP08048 801 aaPredicted RBP25.57■■□□□ 1.68
CLN3-209ENST00000561689 WASHC4Q2M389 1173 aa25.57■■□□□ 1.68
CLN3-209ENST00000561689 PRPF40BQ6NWY9 871 aaKnown RBP25.57■■□□□ 1.68
CLN3-209ENST00000561689 RASEFQ8IZ41 740 aa25.57■■□□□ 1.68
CLN3-209ENST00000561689 AKAP11Q9UKA4 1901 aa25.57■■□□□ 1.68
CLN3-209ENST00000561689 A0A1B0GUL6 1792 aa25.56■■□□□ 1.68
CLN3-209ENST00000561689 OSBP2Q969R2 916 aa25.56■■□□□ 1.68
CLN3-209ENST00000561689 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.56■■□□□ 1.682e-6■■■■■ 40.7
CLN3-209ENST00000561689 GNL3LQ9NVN8 582 aaKnown RBP25.56■■□□□ 1.68
CLN3-209ENST00000561689 SRGNP10124 158 aa25.56■■□□□ 1.68
CLN3-209ENST00000561689 SLC9C2Q5TAH2 1124 aa25.56■■□□□ 1.68
CLN3-209ENST00000561689 SNX14Q9Y5W7 946 aa25.56■■□□□ 1.68
CLN3-209ENST00000561689 MAST3O60307 1309 aa25.56■■□□□ 1.68
CLN3-209ENST00000561689 NRXN2Q9P2S2 1712 aa25.55■■□□□ 1.68
CLN3-209ENST00000561689 M0R2C6 588 aa25.55■■□□□ 1.68
CLN3-209ENST00000561689 PDE6BP35913 854 aa25.55■■□□□ 1.68
CLN3-209ENST00000561689 GPSM2P81274 684 aa25.55■■□□□ 1.68
CLN3-209ENST00000561689 FBXO33Q7Z6M2 555 aa25.55■■□□□ 1.68
CLN3-209ENST00000561689 XDHP47989 1333 aa25.55■■□□□ 1.68
CLN3-209ENST00000561689 NECTIN1Q15223 517 aa25.55■■□□□ 1.68
CLN3-209ENST00000561689 TXNRD3Q86VQ6 643 aa25.55■■□□□ 1.68
CLN3-209ENST00000561689 NSFL1CQ9UNZ2 370 aaKnown RBP25.55■■□□□ 1.68
CLN3-209ENST00000561689 CCDC125Q86Z20 511 aa25.54■■□□□ 1.68
CLN3-209ENST00000561689 IL17RAQ96F46 866 aa25.54■■□□□ 1.68
CLN3-209ENST00000561689 HIBADHP31937 336 aaKnown RBP25.53■■□□□ 1.68
CLN3-209ENST00000561689 ADD2P35612 726 aa25.53■■□□□ 1.68
CLN3-209ENST00000561689 ZSCAN25Q6NSZ9 544 aa25.53■■□□□ 1.68
CLN3-209ENST00000561689 SPRYD3Q8NCJ5 442 aa25.53■■□□□ 1.68
CLN3-209ENST00000561689 WWC3Q9ULE0 1092 aa25.53■■□□□ 1.68
CLN3-209ENST00000561689 LEMD3Q9Y2U8 911 aa25.53■■□□□ 1.68
CLN3-209ENST00000561689 NPR1P16066 1061 aa25.53■■□□□ 1.68
CLN3-209ENST00000561689 NEK4P51957 841 aa25.53■■□□□ 1.68
CLN3-209ENST00000561689 VPS53Q5VIR6 699 aa25.53■■□□□ 1.68
CLN3-209ENST00000561689 CREB3L3Q68CJ9 461 aa25.53■■□□□ 1.68
CLN3-209ENST00000561689 APPBP2Q92624 585 aa25.53■■□□□ 1.68
CLN3-209ENST00000561689 PUS7LQ9H0K6 701 aaKnown RBP25.53■■□□□ 1.68
CLN3-209ENST00000561689 ANKRD31Q8N7Z5 1873 aa25.52■■□□□ 1.68
CLN3-209ENST00000561689 GPR101Q96P66 508 aaPredicted RBP25.52■■□□□ 1.68
CLN3-209ENST00000561689 UPF3BQ9BZI7 483 aaKnown RBP25.52■■□□□ 1.68
CLN3-209ENST00000561689 IRS2Q9Y4H2 1338 aa25.51■■□□□ 1.67
CLN3-209ENST00000561689 PPEF1O14829 653 aaPredicted RBP25.51■■□□□ 1.67
CLN3-209ENST00000561689 PDE6AP16499 860 aa25.51■■□□□ 1.67
CLN3-209ENST00000561689 ST18O60284 1047 aa25.51■■□□□ 1.67
CLN3-209ENST00000561689 FRAT2O75474 233 aaPredicted RBP25.51■■□□□ 1.67
CLN3-209ENST00000561689 COL1A1P02452 1464 aaPredicted RBP25.5■■□□□ 1.67
CLN3-209ENST00000561689 ZNF532Q9HCE3 1301 aa25.5■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms