RNA–Protein interactions for RNA: ENST00000560970.5

TPM1-227, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,039 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-227ENST00000560970 ZNF157P51786 506 aaPredicted RBP13.73□□□□□ -0.21
TPM1-227ENST00000560970 MLLT1Q03111 559 aaPredicted RBP13.73□□□□□ -0.21
TPM1-227ENST00000560970 DGKZQ13574 1117 aa13.73□□□□□ -0.21
TPM1-227ENST00000560970 TWISTNBQ3B726 338 aaPredicted RBP13.73□□□□□ -0.21
TPM1-227ENST00000560970 ANGEL2Q5VTE6 544 aaKnown RBP13.73□□□□□ -0.21
TPM1-227ENST00000560970 COL1A1P02452 1464 aaPredicted RBP13.73□□□□□ -0.21
TPM1-227ENST00000560970 EXOSC9Q06265 439 aaKnown RBP13.72□□□□□ -0.21
TPM1-227ENST00000560970 NEXNQ0ZGT2 675 aa13.72□□□□□ -0.21
TPM1-227ENST00000560970 RASAL3Q86YV0 1011 aa13.72□□□□□ -0.21
TPM1-227ENST00000560970 JARID2Q92833 1246 aaPredicted RBP13.72□□□□□ -0.21
TPM1-227ENST00000560970 STK31Q9BXU1 1019 aa13.72□□□□□ -0.21
TPM1-227ENST00000560970 MYOZ2Q9NPC6 264 aa13.72□□□□□ -0.21
TPM1-227ENST00000560970 RBBP6Q7Z6E9 1792 aaKnown RBP13.72□□□□□ -0.21
TPM1-227ENST00000560970 MYO3BQ8WXR4 1341 aa13.71□□□□□ -0.21
TPM1-227ENST00000560970 USP17L3A6NCW0 530 aa13.71□□□□□ -0.21
TPM1-227ENST00000560970 USP17L4A6NCW7 530 aa13.71□□□□□ -0.21
TPM1-227ENST00000560970 IGKV5-2P06315 115 aa13.71□□□□□ -0.21
TPM1-227ENST00000560970 USP17L8P0C7I0 530 aa13.71□□□□□ -0.21
TPM1-227ENST00000560970 RGS19P49795 217 aa13.71□□□□□ -0.21
TPM1-227ENST00000560970 FKBP1BP68106 108 aa13.71□□□□□ -0.21
TPM1-227ENST00000560970 KIF23Q02241 960 aaPredicted RBP13.71□□□□□ -0.21
TPM1-227ENST00000560970 KSR2Q6VAB6 950 aa13.71□□□□□ -0.21
TPM1-227ENST00000560970 USP17L1Q7RTZ2 530 aa13.71□□□□□ -0.21
TPM1-227ENST00000560970 PODNQ7Z5L7 613 aa13.71□□□□□ -0.21
TPM1-227ENST00000560970 GMLQ99445 158 aa13.71□□□□□ -0.21
TPM1-227ENST00000560970 PI4KAP2A4QPH2 592 aa13.7□□□□□ -0.22
TPM1-227ENST00000560970 SCARF1Q14162 830 aa13.7□□□□□ -0.22
TPM1-227ENST00000560970 PI4KAP1Q8N8J0 262 aa13.7□□□□□ -0.22
TPM1-227ENST00000560970 CDCA7LQ96GN5 454 aa13.7□□□□□ -0.22
TPM1-227ENST00000560970 MYH16Q9H6N6 1097 aa13.7□□□□□ -0.22
TPM1-227ENST00000560970 GREM2Q9H772 168 aa13.7□□□□□ -0.22
TPM1-227ENST00000560970 PDE4DIPQ5VU43 2346 aa13.69□□□□□ -0.22
TPM1-227ENST00000560970 NEURL1BA8MQ27 555 aa13.69□□□□□ -0.22
TPM1-227ENST00000560970 VAMP4O75379 141 aa13.69□□□□□ -0.22
TPM1-227ENST00000560970 CWF19L2Q2TBE0 894 aaKnown RBP13.69□□□□□ -0.22
TPM1-227ENST00000560970 REM2Q8IYK8 340 aaPredicted RBP13.69□□□□□ -0.22
TPM1-227ENST00000560970 TTLL11Q8NHH1 800 aa13.69□□□□□ -0.22
TPM1-227ENST00000560970 BSDC1Q9NW68 430 aaPredicted RBP13.69□□□□□ -0.22
TPM1-227ENST00000560970 CCT4P50991 539 aaKnown RBP13.68□□□□□ -0.22
TPM1-227ENST00000560970 SLFN5Q08AF3 891 aa13.68□□□□□ -0.22
TPM1-227ENST00000560970 G2E3Q7L622 706 aa13.68□□□□□ -0.22
TPM1-227ENST00000560970 UBE3BQ7Z3V4 1068 aa13.68□□□□□ -0.22
TPM1-227ENST00000560970 RNF186Q9NXI6 227 aa13.68□□□□□ -0.22
TPM1-227ENST00000560970 E9PSI1 815 aa13.67□□□□□ -0.22
TPM1-227ENST00000560970 IGHMBP2P38935 993 aaKnown RBP13.67□□□□□ -0.22
TPM1-227ENST00000560970 DACT2Q5SW24 774 aa13.67□□□□□ -0.22
TPM1-227ENST00000560970 FBXW7Q969H0 707 aa13.67□□□□□ -0.22
TPM1-227ENST00000560970 COA1Q9GZY4 146 aa13.67□□□□□ -0.22
TPM1-227ENST00000560970 MINPP1Q9UNW1 487 aa13.67□□□□□ -0.22
TPM1-227ENST00000560970 TRPA1O75762 1119 aa13.66□□□□□ -0.22
TPM1-227ENST00000560970 SLC34A2O95436 690 aa13.66□□□□□ -0.22
TPM1-227ENST00000560970 STRIP1Q5VSL9 837 aa13.66□□□□□ -0.22
TPM1-227ENST00000560970 PPP4R3CPQ6ZMV5 832 aa13.66□□□□□ -0.22
TPM1-227ENST00000560970 OGFOD1Q8N543 542 aa13.66□□□□□ -0.22
TPM1-227ENST00000560970 PLA2G12BQ9BX93 195 aa13.66□□□□□ -0.22
TPM1-227ENST00000560970 SASH1O94885 1247 aa13.65□□□□□ -0.22
TPM1-227ENST00000560970 ITGA6P23229 1130 aa13.65□□□□□ -0.22
TPM1-227ENST00000560970 NF2P35240 595 aa13.65□□□□□ -0.22
TPM1-227ENST00000560970 FLIIQ13045 1269 aa13.65□□□□□ -0.22
TPM1-227ENST00000560970 NBPF9Q3BBW0 867 aa13.65□□□□□ -0.22
TPM1-227ENST00000560970 TRMT2AQ8IZ69 625 aaKnown RBP13.65□□□□□ -0.22
TPM1-227ENST00000560970 CSRNP1Q96S65 589 aa13.65□□□□□ -0.22
TPM1-227ENST00000560970 LEMD3Q9Y2U8 911 aa13.65□□□□□ -0.22
TPM1-227ENST00000560970 SSC5DA1L4H1 1573 aa13.65□□□□□ -0.22
TPM1-227ENST00000560970 ZNF804BA4D1E1 1349 aa13.64□□□□□ -0.23
TPM1-227ENST00000560970 WTIPA6NIX2 430 aaPredicted RBP13.64□□□□□ -0.23
TPM1-227ENST00000560970 H7C1W4 665 aa13.64□□□□□ -0.23
TPM1-227ENST00000560970 WNT10BO00744 389 aa13.64□□□□□ -0.23
TPM1-227ENST00000560970 SLC4A2P04920 1241 aa13.64□□□□□ -0.23
TPM1-227ENST00000560970 KLRK1P26718 216 aa13.64□□□□□ -0.23
TPM1-227ENST00000560970 MMP14P50281 582 aa13.64□□□□□ -0.23
TPM1-227ENST00000560970 HNRNPUQ00839 825 aaKnown RBP eCLIP13.64□□□□□ -0.23
TPM1-227ENST00000560970 FKBP5Q13451 457 aaPredicted RBP13.64□□□□□ -0.23
TPM1-227ENST00000560970 GCKRQ14397 625 aa13.64□□□□□ -0.23
TPM1-227ENST00000560970 CTU1Q7Z7A3 348 aaKnown RBP13.64□□□□□ -0.23
TPM1-227ENST00000560970 APOBEC3FQ8IUX4 373 aaKnown RBP13.64□□□□□ -0.23
TPM1-227ENST00000560970 MXD3Q9BW11 206 aa13.64□□□□□ -0.23
TPM1-227ENST00000560970 ANKRD2Q9GZV1 360 aa13.64□□□□□ -0.23
TPM1-227ENST00000560970 SCAF8Q9UPN6 1271 aaKnown RBP13.64□□□□□ -0.23
TPM1-227ENST00000560970 HTTP42858 3142 aa13.63□□□□□ -0.23
TPM1-227ENST00000560970 KCNJ4P48050 445 aa13.63□□□□□ -0.23
TPM1-227ENST00000560970 CASP7P55210 303 aa13.63□□□□□ -0.23
TPM1-227ENST00000560970 TTLL12Q14166 644 aaPredicted RBP13.63□□□□□ -0.23
TPM1-227ENST00000560970 MOB2Q70IA6 237 aa13.63□□□□□ -0.23
TPM1-227ENST00000560970 TXNRD3Q86VQ6 643 aa13.63□□□□□ -0.23
TPM1-227ENST00000560970 DNAAF4Q8WXU2 420 aa13.63□□□□□ -0.23
TPM1-227ENST00000560970 MPHOSPH8Q99549 860 aa13.63□□□□□ -0.23
TPM1-227ENST00000560970 HDAC9Q9UKV0 1011 aa13.63□□□□□ -0.23
TPM1-227ENST00000560970 KIAA0825Q8IV33 1275 aa13.62□□□□□ -0.23
TPM1-227ENST00000560970 LINS1Q8NG48 757 aa13.62□□□□□ -0.23
TPM1-227ENST00000560970 UBE2Q2LH0YL09 131 aa13.61□□□□□ -0.23
TPM1-227ENST00000560970 SOX10P56693 466 aa13.61□□□□□ -0.23
TPM1-227ENST00000560970 CHRNDQ07001 517 aa13.61□□□□□ -0.23
TPM1-227ENST00000560970 SREBF2Q12772 1141 aa13.61□□□□□ -0.23
TPM1-227ENST00000560970 IRS2Q9Y4H2 1338 aa13.61□□□□□ -0.23
TPM1-227ENST00000560970 ANKRD18BA2A2Z9 1011 aa13.6□□□□□ -0.23
TPM1-227ENST00000560970 CSF1RP07333 972 aa13.6□□□□□ -0.23
TPM1-227ENST00000560970 PRAMEF18Q5VWM3 479 aa13.6□□□□□ -0.23
TPM1-227ENST00000560970 TTLL5Q6EMB2 1281 aa13.6□□□□□ -0.23
TPM1-227ENST00000560970 GTF2IP78347 998 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms