RNA–Protein interactions for RNA: ENST00000556432.1

ACTN1-219, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 558 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-219ENST00000556432 ALDH1A1P00352 501 aa18.04■□□□□ 0.48
ACTN1-219ENST00000556432 PCCAP05165 728 aaPredicted RBP18.04■□□□□ 0.48
ACTN1-219ENST00000556432 CDC5LQ99459 802 aaKnown RBP18.04■□□□□ 0.48
ACTN1-219ENST00000556432 CWC25Q9NXE8 425 aaPredicted RBP18.04■□□□□ 0.48
ACTN1-219ENST00000556432 ANGEL1Q9UNK9 670 aaKnown RBP18.04■□□□□ 0.48
ACTN1-219ENST00000556432 MYO3BQ8WXR4 1341 aa18.03■□□□□ 0.48
ACTN1-219ENST00000556432 POTEFA5A3E0 1075 aa18.03■□□□□ 0.48
ACTN1-219ENST00000556432 DACT2Q5SW24 774 aa18.03■□□□□ 0.48
ACTN1-219ENST00000556432 SPRYD7Q5W111 196 aa18.03■□□□□ 0.48
ACTN1-219ENST00000556432 APOBEC3FQ8IUX4 373 aaKnown RBP18.03■□□□□ 0.48
ACTN1-219ENST00000556432 CCDC191Q8NCU4 936 aa18.03■□□□□ 0.48
ACTN1-219ENST00000556432 CFHR5Q9BXR6 569 aa18.03■□□□□ 0.48
ACTN1-219ENST00000556432 MED23Q9ULK4 1368 aa18.03■□□□□ 0.48
ACTN1-219ENST00000556432 WTIPA6NIX2 430 aaPredicted RBP18.02■□□□□ 0.48
ACTN1-219ENST00000556432 INTS3Q68E01 1043 aaKnown RBP18.02■□□□□ 0.48
ACTN1-219ENST00000556432 PHAXQ9H814 394 aaKnown RBP18.02■□□□□ 0.48
ACTN1-219ENST00000556432 STRIP1Q5VSL9 837 aa18.01■□□□□ 0.47
ACTN1-219ENST00000556432 OTOP1Q7RTM1 612 aa18.01■□□□□ 0.47
ACTN1-219ENST00000556432 KIAA0825Q8IV33 1275 aa18.01■□□□□ 0.47
ACTN1-219ENST00000556432 SLC10A4Q96EP9 437 aa18.01■□□□□ 0.47
ACTN1-219ENST00000556432 TRIM35Q9UPQ4 493 aa18.01■□□□□ 0.47
ACTN1-219ENST00000556432 MANSC4A6NHS7 340 aaPredicted RBP18■□□□□ 0.47
ACTN1-219ENST00000556432 CTSWP56202 376 aa18■□□□□ 0.47
ACTN1-219ENST00000556432 IFNL1Q8IU54 200 aa18■□□□□ 0.47
ACTN1-219ENST00000556432 COA1Q9GZY4 146 aa18■□□□□ 0.47
ACTN1-219ENST00000556432 FZD1Q9UP38 647 aa18■□□□□ 0.47
ACTN1-219ENST00000556432 CCT4P50991 539 aaKnown RBP17.99■□□□□ 0.47
ACTN1-219ENST00000556432 LDLRAD1Q5T700 205 aa17.99■□□□□ 0.47
ACTN1-219ENST00000556432 MINPP1Q9UNW1 487 aa17.99■□□□□ 0.47
ACTN1-219ENST00000556432 MKI67P46013 3256 aaKnown RBP17.98■□□□□ 0.47
ACTN1-219ENST00000556432 KIAA0100Q14667 2235 aaKnown RBP17.98■□□□□ 0.47
ACTN1-219ENST00000556432 ELL2O00472 640 aaPredicted RBP17.98■□□□□ 0.47
ACTN1-219ENST00000556432 DDX58O95786 925 aaKnown RBP17.98■□□□□ 0.47
ACTN1-219ENST00000556432 INHBEP58166 350 aa17.98■□□□□ 0.47
ACTN1-219ENST00000556432 WDR43Q15061 677 aaKnown RBP eCLIP17.98■□□□□ 0.47
ACTN1-219ENST00000556432 TTLL5Q6EMB2 1281 aa17.98■□□□□ 0.47
ACTN1-219ENST00000556432 RUNDC1Q96C34 613 aa17.98■□□□□ 0.47
ACTN1-219ENST00000556432 ERO1AQ96HE7 468 aa17.98■□□□□ 0.47
ACTN1-219ENST00000556432 MBIPQ9NS73 344 aa17.98■□□□□ 0.47
ACTN1-219ENST00000556432 BSDC1Q9NW68 430 aaPredicted RBP17.98■□□□□ 0.47
ACTN1-219ENST00000556432 HTTP42858 3142 aa17.98■□□□□ 0.47
ACTN1-219ENST00000556432 MMP14P50281 582 aa17.97■□□□□ 0.47
ACTN1-219ENST00000556432 CD99L2Q8TCZ2 262 aa17.97■□□□□ 0.47
ACTN1-219ENST00000556432 METTL22Q9BUU2 404 aaPredicted RBP17.97■□□□□ 0.47
ACTN1-219ENST00000556432 DEFB129Q9H1M3 183 aa17.97■□□□□ 0.47
ACTN1-219ENST00000556432 GREM2Q9H772 168 aa17.97■□□□□ 0.47
ACTN1-219ENST00000556432 SPEF2Q9C093 1822 aa17.97■□□□□ 0.47
ACTN1-219ENST00000556432 PPP1R12BO60237 982 aaPredicted RBP17.96■□□□□ 0.47
ACTN1-219ENST00000556432 RALBP1Q15311 655 aa17.96■□□□□ 0.47
ACTN1-219ENST00000556432 WNK4Q96J92 1243 aa17.96■□□□□ 0.47
ACTN1-219ENST00000556432 CLMNQ96JQ2 1002 aa17.96■□□□□ 0.47
ACTN1-219ENST00000556432 PTPN22Q9Y2R2 807 aa17.96■□□□□ 0.47
ACTN1-219ENST00000556432 IGF2BP3O00425 579 aaKnown RBP eCLIP17.95■□□□□ 0.46
ACTN1-219ENST00000556432 ZBTB48P10074 688 aaPredicted RBP17.95■□□□□ 0.46
ACTN1-219ENST00000556432 EN2P19622 333 aaPredicted RBP17.95■□□□□ 0.46
ACTN1-219ENST00000556432 IGHMBP2P38935 993 aaKnown RBP17.95■□□□□ 0.46
ACTN1-219ENST00000556432 KCNJ4P48050 445 aa17.95■□□□□ 0.46
ACTN1-219ENST00000556432 GTF2IP78347 998 aa17.95■□□□□ 0.46
ACTN1-219ENST00000556432 DLGAP5Q15398 846 aa17.95■□□□□ 0.46
ACTN1-219ENST00000556432 OTUD7BQ6GQQ9 843 aa17.95■□□□□ 0.46
ACTN1-219ENST00000556432 TXNRD3Q86VQ6 643 aa17.95■□□□□ 0.46
ACTN1-219ENST00000556432 TMEM106CQ9BVX2 250 aa17.95■□□□□ 0.46
ACTN1-219ENST00000556432 EFCC1Q9HA90 598 aa17.95■□□□□ 0.46
ACTN1-219ENST00000556432 COL1A1P02452 1464 aaPredicted RBP17.95■□□□□ 0.46
ACTN1-219ENST00000556432 FXR1P51114 621 aaKnown RBP eCLIP17.94■□□□□ 0.46
ACTN1-219ENST00000556432 CRHR2Q13324 411 aa17.94■□□□□ 0.46
ACTN1-219ENST00000556432 TTLL11Q8NHH1 800 aa17.94■□□□□ 0.46
ACTN1-219ENST00000556432 MAP3K2Q9Y2U5 619 aa17.94■□□□□ 0.46
ACTN1-219ENST00000556432 LEMD3Q9Y2U8 911 aa17.94■□□□□ 0.46
ACTN1-219ENST00000556432 KLRK1P26718 216 aa17.93■□□□□ 0.46
ACTN1-219ENST00000556432 ZNF804BA4D1E1 1349 aa17.93■□□□□ 0.46
ACTN1-219ENST00000556432 CENPFP49454 3210 aa17.93■□□□□ 0.46
ACTN1-219ENST00000556432 MYO1BO43795 1136 aa17.92■□□□□ 0.46
ACTN1-219ENST00000556432 IREB2P48200 963 aaKnown RBP17.92■□□□□ 0.46
ACTN1-219ENST00000556432 NEXNQ0ZGT2 675 aa17.92■□□□□ 0.46
ACTN1-219ENST00000556432 SUPT20HL1Q3ZLR7 823 aa17.92■□□□□ 0.46
ACTN1-219ENST00000556432 ARMC5Q96C12 935 aa17.92■□□□□ 0.46
ACTN1-219ENST00000556432 ZBED3Q96IU2 234 aaPredicted RBP17.92■□□□□ 0.46
ACTN1-219ENST00000556432 VEZTQ9HBM0 779 aa17.92■□□□□ 0.46
ACTN1-219ENST00000556432 ZNF646O15015 1829 aaPredicted RBP17.92■□□□□ 0.46
ACTN1-219ENST00000556432 CLRN2A0PK11 232 aa17.91■□□□□ 0.46
ACTN1-219ENST00000556432 F8W031 263 aaPredicted RBP17.91■□□□□ 0.46
ACTN1-219ENST00000556432 SP3Q02447 781 aa17.91■□□□□ 0.46
ACTN1-219ENST00000556432 MAP3K11Q16584 847 aa17.91■□□□□ 0.46
ACTN1-219ENST00000556432 MPHOSPH8Q99549 860 aa17.91■□□□□ 0.46
ACTN1-219ENST00000556432 ANKRD2Q9GZV1 360 aa17.91■□□□□ 0.46
ACTN1-219ENST00000556432 PPP2R3BQ9Y5P8 575 aa17.91■□□□□ 0.46
ACTN1-219ENST00000556432 RBBP6Q7Z6E9 1792 aaKnown RBP17.9■□□□□ 0.46
ACTN1-219ENST00000556432 SLC4A8Q2Y0W8 1093 aa17.9■□□□□ 0.46
ACTN1-219ENST00000556432 CCDC30Q5VVM6 783 aa17.9■□□□□ 0.46
ACTN1-219ENST00000556432 IFT57Q9NWB7 429 aa17.9■□□□□ 0.46
ACTN1-219ENST00000556432 SSC5DA1L4H1 1573 aa17.9■□□□□ 0.46
ACTN1-219ENST00000556432 PI4KAP2A4QPH2 592 aa17.89■□□□□ 0.45
ACTN1-219ENST00000556432 IGKV5-2P06315 115 aa17.89■□□□□ 0.45
ACTN1-219ENST00000556432 RBM5P52756 815 aaKnown RBP eCLIP17.89■□□□□ 0.45
ACTN1-219ENST00000556432 GNAI1P63096 354 aa17.89■□□□□ 0.45
ACTN1-219ENST00000556432 CALD1Q05682 793 aaKnown RBP17.89■□□□□ 0.45
ACTN1-219ENST00000556432 SLC9C1Q4G0N8 1177 aa17.89■□□□□ 0.45
ACTN1-219ENST00000556432 UBE3BQ7Z3V4 1068 aa17.89■□□□□ 0.45
ACTN1-219ENST00000556432 PI4KAP1Q8N8J0 262 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms