RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 DCAF8Q5TAQ9 597 aa12.95□□□□□ -0.34
CCDC88C-206ENST00000553437 MICALL2Q8IY33 904 aa12.95□□□□□ -0.34
CCDC88C-206ENST00000553437 HELBQ8NG08 1087 aaPredicted RBP12.95□□□□□ -0.34
CCDC88C-206ENST00000553437 ARHGAP45Q92619 1136 aa12.95□□□□□ -0.34
CCDC88C-206ENST00000553437 KLRG1Q96E93 195 aa12.95□□□□□ -0.34
CCDC88C-206ENST00000553437 API5Q9BZZ5 524 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-206ENST00000553437 H7C1D1 291 aa12.94□□□□□ -0.34
CCDC88C-206ENST00000553437 EGFRP00533 1210 aa12.94□□□□□ -0.34
CCDC88C-206ENST00000553437 RSBN1LQ6PCB5 846 aaPredicted RBP12.94□□□□□ -0.34
CCDC88C-206ENST00000553437 LDHAL6AQ6ZMR3 332 aa12.94□□□□□ -0.34
CCDC88C-206ENST00000553437 C15orf52Q6ZUT6 534 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-206ENST00000553437 SAMD7Q7Z3H4 446 aa12.94□□□□□ -0.34
CCDC88C-206ENST00000553437 GMLQ99445 158 aa12.94□□□□□ -0.34
CCDC88C-206ENST00000553437 PUS3Q9BZE2 481 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-206ENST00000553437 COA1Q9GZY4 146 aa12.94□□□□□ -0.34
CCDC88C-206ENST00000553437 CREBZFQ9NS37 354 aa12.94□□□□□ -0.34
CCDC88C-206ENST00000553437 USP17L3A6NCW0 530 aa12.93□□□□□ -0.34
CCDC88C-206ENST00000553437 USP17L4A6NCW7 530 aa12.93□□□□□ -0.34
CCDC88C-206ENST00000553437 BCAR3O75815 825 aa12.93□□□□□ -0.34
CCDC88C-206ENST00000553437 FMR1Q06787 632 aaKnown RBP eCLIP12.93□□□□□ -0.34
CCDC88C-206ENST00000553437 TAF7LQ5H9L4 462 aa12.93□□□□□ -0.34
CCDC88C-206ENST00000553437 USP17L1Q7RTZ2 530 aa12.93□□□□□ -0.34
CCDC88C-206ENST00000553437 AGBL3Q8NEM8 1001 aa12.93□□□□□ -0.34
CCDC88C-206ENST00000553437 ZC3H15Q8WU90 426 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-206ENST00000553437 RIPOR2Q9Y4F9 1068 aa12.93□□□□□ -0.34
CCDC88C-206ENST00000553437 ZNF609O15014 1411 aa12.93□□□□□ -0.34
CCDC88C-206ENST00000553437 ZBED9Q6R2W3 1325 aa12.92□□□□□ -0.34
CCDC88C-206ENST00000553437 KIF16BQ96L93 1317 aa12.92□□□□□ -0.34
CCDC88C-206ENST00000553437 KCNJ4P48050 445 aa12.92□□□□□ -0.34
CCDC88C-206ENST00000553437 ZNF280AP59817 542 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-206ENST00000553437 DACT2Q5SW24 774 aa12.92□□□□□ -0.34
CCDC88C-206ENST00000553437 INTS3Q68E01 1043 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-206ENST00000553437 CNNM1Q9NRU3 951 aa12.92□□□□□ -0.34
CCDC88C-206ENST00000553437 MYH3P11055 1940 aa12.92□□□□□ -0.34
CCDC88C-206ENST00000553437 TMEM88BA6NKF7 163 aa12.91□□□□□ -0.34
CCDC88C-206ENST00000553437 TRAF5O00463 557 aa12.91□□□□□ -0.34
CCDC88C-206ENST00000553437 RFX5P48382 616 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-206ENST00000553437 TBC1D10BQ4KMP7 808 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-206ENST00000553437 STRIP1Q5VSL9 837 aa12.91□□□□□ -0.34
CCDC88C-206ENST00000553437 MXD3Q9BW11 206 aa12.91□□□□□ -0.34
CCDC88C-206ENST00000553437 CD209Q9NNX6 404 aa12.91□□□□□ -0.34
CCDC88C-206ENST00000553437 TNNQ9UQP3 1299 aa12.91□□□□□ -0.34
CCDC88C-206ENST00000553437 PLIN1O60240 522 aa12.9□□□□□ -0.34
CCDC88C-206ENST00000553437 TRIM27P14373 513 aa12.9□□□□□ -0.34
CCDC88C-206ENST00000553437 UBE4AQ14139 1066 aa12.9□□□□□ -0.34
CCDC88C-206ENST00000553437 LRRC24Q50LG9 513 aa12.9□□□□□ -0.34
CCDC88C-206ENST00000553437 RBM26Q5T8P6 1007 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-206ENST00000553437 CST9Q5W186 159 aa12.9□□□□□ -0.34
CCDC88C-206ENST00000553437 GLIS2Q9BZE0 524 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-206ENST00000553437 SCN9AQ15858 1988 aa12.89□□□□□ -0.35
CCDC88C-206ENST00000553437 IPO8O15397 1037 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-206ENST00000553437 USP17L8P0C7I0 530 aa12.89□□□□□ -0.35
CCDC88C-206ENST00000553437 UBTFL1P0CB47 393 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-206ENST00000553437 IL1R1P14778 569 aa12.89□□□□□ -0.35
CCDC88C-206ENST00000553437 KIF4BQ2VIQ3 1234 aa12.89□□□□□ -0.35
CCDC88C-206ENST00000553437 TTLL5Q6EMB2 1281 aa12.89□□□□□ -0.35
CCDC88C-206ENST00000553437 ATF7IPQ6VMQ6 1270 aa12.89□□□□□ -0.35
CCDC88C-206ENST00000553437 CDC37L1Q7L3B6 337 aa12.89□□□□□ -0.35
CCDC88C-206ENST00000553437 VGLL2Q8N8G2 317 aa12.89□□□□□ -0.35
CCDC88C-206ENST00000553437 KLHDC4Q8TBB5 520 aa12.89□□□□□ -0.35
CCDC88C-206ENST00000553437 MEIS3Q99687 375 aa12.89□□□□□ -0.35
CCDC88C-206ENST00000553437 MROH5Q6ZUA9 1318 aa12.88□□□□□ -0.35
CCDC88C-206ENST00000553437 GTF2IP78347 998 aa12.88□□□□□ -0.35
CCDC88C-206ENST00000553437 PTPN12Q05209 780 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-206ENST00000553437 DLK2Q6UY11 383 aa12.88□□□□□ -0.35
CCDC88C-206ENST00000553437 FRAT1Q92837 279 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-206ENST00000553437 MKRN1Q9UHC7 482 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-206ENST00000553437 LRRFIP2Q9Y608 721 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-206ENST00000553437 U3KPZ7 1027 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-206ENST00000553437 CNTNAP1P78357 1384 aa12.88□□□□□ -0.35
CCDC88C-206ENST00000553437 ASTN2O75129 1339 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-206ENST00000553437 RASSF10A6NK89 507 aa12.87□□□□□ -0.35
CCDC88C-206ENST00000553437 ZNF804AQ7Z570 1209 aa12.87□□□□□ -0.35
CCDC88C-206ENST00000553437 USP48Q86UV5 1035 aa12.87□□□□□ -0.35
CCDC88C-206ENST00000553437 CERS5Q8N5B7 392 aa12.87□□□□□ -0.35
CCDC88C-206ENST00000553437 FAM84BQ96KN1 310 aaPredicted RBP12.87□□□□□ -0.35
CCDC88C-206ENST00000553437 MYOZ2Q9NPC6 264 aa12.87□□□□□ -0.35
CCDC88C-206ENST00000553437 MYO3BQ8WXR4 1341 aa12.87□□□□□ -0.35
CCDC88C-206ENST00000553437 SPEF2Q9C093 1822 aa12.86□□□□□ -0.35
CCDC88C-206ENST00000553437 EYA2O00167 538 aa12.86□□□□□ -0.35
CCDC88C-206ENST00000553437 PDE8BO95263 885 aa12.86□□□□□ -0.35
CCDC88C-206ENST00000553437 GYG1P46976 350 aa12.86□□□□□ -0.35
CCDC88C-206ENST00000553437 SCARF1Q14162 830 aa12.86□□□□□ -0.35
CCDC88C-206ENST00000553437 METTL24Q5JXM2 366 aa12.86□□□□□ -0.35
CCDC88C-206ENST00000553437 ZKSCAN2Q63HK3 967 aa12.86□□□□□ -0.35
CCDC88C-206ENST00000553437 ATG9AQ7Z3C6 839 aa12.86□□□□□ -0.35
CCDC88C-206ENST00000553437 FBXO33Q7Z6M2 555 aa12.86□□□□□ -0.35
CCDC88C-206ENST00000553437 TDRD7Q8NHU6 1098 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-206ENST00000553437 FBXW7Q969H0 707 aa12.86□□□□□ -0.35
CCDC88C-206ENST00000553437 CLUAP1Q96AJ1 413 aa12.86□□□□□ -0.35
CCDC88C-206ENST00000553437 HDAC5Q9UQL6 1122 aa12.86□□□□□ -0.35
CCDC88C-206ENST00000553437 SASH1O94885 1247 aa12.85□□□□□ -0.35
CCDC88C-206ENST00000553437 CELF2O95319 508 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-206ENST00000553437 GNAI3P08754 354 aa12.85□□□□□ -0.35
CCDC88C-206ENST00000553437 FGFR2P21802 821 aa12.85□□□□□ -0.35
CCDC88C-206ENST00000553437 HIBADHP31937 336 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-206ENST00000553437 VEGFBP49765 207 aa12.85□□□□□ -0.35
CCDC88C-206ENST00000553437 MMP14P50281 582 aa12.85□□□□□ -0.35
CCDC88C-206ENST00000553437 KRT26Q7Z3Y9 468 aa12.85□□□□□ -0.35
CCDC88C-206ENST00000553437 DCPSQ96C86 337 aaKnown RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms