RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 SASH3O75995 380 aa8.19□□□□□ -1.1
SCFD1-208ENST00000553278 PF4P02776 101 aa8.19□□□□□ -1.1
SCFD1-208ENST00000553278 CHMP4BP1P59074 171 aa8.19□□□□□ -1.1
SCFD1-208ENST00000553278 LMNB2Q03252 620 aa8.19□□□□□ -1.1
SCFD1-208ENST00000553278 SAMD5Q5TGI4 173 aa8.19□□□□□ -1.1
SCFD1-208ENST00000553278 TPTE2Q6XPS3 522 aa8.19□□□□□ -1.1
SCFD1-208ENST00000553278 NLRP8Q86W28 1048 aa8.19□□□□□ -1.1
SCFD1-208ENST00000553278 SLKQ9H2G2 1235 aaPredicted RBP8.19□□□□□ -1.1
SCFD1-208ENST00000553278 CRISPLD1Q9H336 500 aa8.19□□□□□ -1.1
SCFD1-208ENST00000553278 UBP1Q9NZI7 540 aa8.19□□□□□ -1.1
SCFD1-208ENST00000553278 SALL4Q9UJQ4 1053 aa8.19□□□□□ -1.1
SCFD1-208ENST00000553278 KCNH4Q9UQ05 1017 aa8.19□□□□□ -1.1
SCFD1-208ENST00000553278 PPP1R12AO14974 1030 aaPredicted RBP8.18□□□□□ -1.1
SCFD1-208ENST00000553278 BMP2P12643 396 aa8.18□□□□□ -1.1
SCFD1-208ENST00000553278 SMPD1P17405 629 aa8.18□□□□□ -1.1
SCFD1-208ENST00000553278 GARTP22102 1010 aa8.18□□□□□ -1.1
SCFD1-208ENST00000553278 CAMK2GQ13555 558 aaPredicted RBP8.18□□□□□ -1.1
SCFD1-208ENST00000553278 CCINQ13939 588 aa8.18□□□□□ -1.1
SCFD1-208ENST00000553278 PLEKHG4Q58EX7 1191 aa8.18□□□□□ -1.1
SCFD1-208ENST00000553278 NOL8Q76FK4 1167 aaKnown RBP8.18□□□□□ -1.1
SCFD1-208ENST00000553278 FILIP1Q7Z7B0 1213 aa8.18□□□□□ -1.1
SCFD1-208ENST00000553278 GOLM1Q8NBJ4 401 aa8.18□□□□□ -1.1
SCFD1-208ENST00000553278 TCF12Q99081 682 aa8.18□□□□□ -1.1
SCFD1-208ENST00000553278 TMX1Q9H3N1 280 aa8.18□□□□□ -1.1
SCFD1-208ENST00000553278 TLR6Q9Y2C9 796 aa8.18□□□□□ -1.1
SCFD1-208ENST00000553278 DNAJC6O75061 913 aa8.17□□□□□ -1.1
SCFD1-208ENST00000553278 RHOQP17081 205 aa8.17□□□□□ -1.1
SCFD1-208ENST00000553278 KCNQ4P56696 695 aa8.17□□□□□ -1.1
SCFD1-208ENST00000553278 RASA3Q14644 834 aa8.17□□□□□ -1.1
SCFD1-208ENST00000553278 KRT25Q7Z3Z0 450 aa8.17□□□□□ -1.1
SCFD1-208ENST00000553278 CCNJLQ8IV13 435 aa8.17□□□□□ -1.1
SCFD1-208ENST00000553278 ZCCHC2Q9C0B9 1178 aaKnown RBP8.17□□□□□ -1.1
SCFD1-208ENST00000553278 SPC25Q9HBM1 224 aa8.17□□□□□ -1.1
SCFD1-208ENST00000553278 COL4A3BPQ9Y5P4 624 aa8.17□□□□□ -1.1
SCFD1-208ENST00000553278 ROBO2Q9HCK4 1378 aa8.17□□□□□ -1.1
SCFD1-208ENST00000553278 CCDC85CA6NKD9 419 aa8.16□□□□□ -1.1
SCFD1-208ENST00000553278 CAPN5O15484 640 aaPredicted RBP8.16□□□□□ -1.1
SCFD1-208ENST00000553278 MMP20O60882 483 aa8.16□□□□□ -1.1
SCFD1-208ENST00000553278 CELA3AP09093 270 aa8.16□□□□□ -1.1
SCFD1-208ENST00000553278 RARAP10276 462 aa8.16□□□□□ -1.1
SCFD1-208ENST00000553278 DIEXFQ68CQ4 756 aaKnown RBP8.16□□□□□ -1.1
SCFD1-208ENST00000553278 TTBK2Q6IQ55 1244 aa8.16□□□□□ -1.1
SCFD1-208ENST00000553278 AGMOQ6ZNB7 445 aa8.16□□□□□ -1.1
SCFD1-208ENST00000553278 FAM196AQ6ZSG2 479 aa8.16□□□□□ -1.1
SCFD1-208ENST00000553278 NCAPG2Q86XI2 1143 aa8.16□□□□□ -1.1
SCFD1-208ENST00000553278 SLITRK4Q8IW52 837 aa8.16□□□□□ -1.1
SCFD1-208ENST00000553278 OSMRQ99650 979 aa8.16□□□□□ -1.1
SCFD1-208ENST00000553278 POLR3GLQ9BT43 218 aa8.16□□□□□ -1.1
SCFD1-208ENST00000553278 RUBCNLQ9H714 662 aa8.16□□□□□ -1.1
SCFD1-208ENST00000553278 GPAMQ9HCL2 828 aa8.16□□□□□ -1.1
SCFD1-208ENST00000553278 IFT57Q9NWB7 429 aa8.16□□□□□ -1.1
SCFD1-208ENST00000553278 TOR4AQ9NXH8 423 aa8.16□□□□□ -1.1
SCFD1-208ENST00000553278 PRKAB1Q9Y478 270 aa8.16□□□□□ -1.1
SCFD1-208ENST00000553278 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.16□□□□□ -1.1
SCFD1-208ENST00000553278 FAM221BA6H8Z2 402 aa8.15□□□□□ -1.1
SCFD1-208ENST00000553278 SMAD7O15105 426 aaKnown RBP8.15□□□□□ -1.1
SCFD1-208ENST00000553278 GFRA3O60609 400 aa8.15□□□□□ -1.1
SCFD1-208ENST00000553278 CDC45O75419 566 aa8.15□□□□□ -1.1
SCFD1-208ENST00000553278 PSAPP07602 524 aa8.15□□□□□ -1.1
SCFD1-208ENST00000553278 LMNB1P20700 586 aa8.15□□□□□ -1.1
SCFD1-208ENST00000553278 TARSP26639 723 aaKnown RBP8.15□□□□□ -1.1
SCFD1-208ENST00000553278 RPS26P62854 115 aaKnown RBP8.15□□□□□ -1.1
SCFD1-208ENST00000553278 HYAL2Q12891 473 aa8.15□□□□□ -1.1
SCFD1-208ENST00000553278 GRIN2CQ14957 1233 aa8.15□□□□□ -1.1
SCFD1-208ENST00000553278 EFHC2Q5JST6 749 aa8.15□□□□□ -1.1
SCFD1-208ENST00000553278 HPS1Q92902 700 aa8.15□□□□□ -1.1
SCFD1-208ENST00000553278 SHDQ96IW2 340 aa8.15□□□□□ -1.1
SCFD1-208ENST00000553278 PNMA5Q96PV4 448 aa8.15□□□□□ -1.1
SCFD1-208ENST00000553278 CRBNQ96SW2 442 aa8.15□□□□□ -1.1
SCFD1-208ENST00000553278 ZKSCAN3Q9BRR0 538 aa8.15□□□□□ -1.1
SCFD1-208ENST00000553278 GSX2Q9BZM3 304 aa8.15□□□□□ -1.1
SCFD1-208ENST00000553278 CCDC113Q9H0I3 377 aa8.15□□□□□ -1.1
SCFD1-208ENST00000553278 GDF9O60383 454 aa8.14□□□□□ -1.11
SCFD1-208ENST00000553278 F11P03951 625 aa8.14□□□□□ -1.11
SCFD1-208ENST00000553278 EIF6P56537 245 aaKnown RBP8.14□□□□□ -1.11
SCFD1-208ENST00000553278 IFRD2Q12894 506 aaPredicted RBP8.14□□□□□ -1.11
SCFD1-208ENST00000553278 SEZ6Q53EL9 994 aa8.14□□□□□ -1.11
SCFD1-208ENST00000553278 TAF7LQ5H9L4 462 aa8.14□□□□□ -1.11
SCFD1-208ENST00000553278 C6orf118Q5T5N4 469 aa8.14□□□□□ -1.11
SCFD1-208ENST00000553278 SH3TC2Q8TF17 1288 aa8.14□□□□□ -1.11
SCFD1-208ENST00000553278 TTLL8A6PVC2 850 aa8.13□□□□□ -1.11
SCFD1-208ENST00000553278 KIF4AO95239 1232 aa8.13□□□□□ -1.11
SCFD1-208ENST00000553278 TFE3P19532 575 aaPredicted RBP8.13□□□□□ -1.11
SCFD1-208ENST00000553278 ITPKAP23677 461 aa8.13□□□□□ -1.11
SCFD1-208ENST00000553278 SOX18P35713 384 aa8.13□□□□□ -1.11
SCFD1-208ENST00000553278 CRKP46108 304 aa8.13□□□□□ -1.11
SCFD1-208ENST00000553278 FIGNL1Q6PIW4 674 aa8.13□□□□□ -1.11
SCFD1-208ENST00000553278 CCDC81Q6ZN84 652 aa8.13□□□□□ -1.11
SCFD1-208ENST00000553278 CCDC84Q86UT8 332 aaPredicted RBP8.13□□□□□ -1.11
SCFD1-208ENST00000553278 APPBP2Q92624 585 aa8.13□□□□□ -1.11
SCFD1-208ENST00000553278 NECAB3Q96P71 396 aaPredicted RBP8.13□□□□□ -1.11
SCFD1-208ENST00000553278 PCDH12Q9NPG4 1184 aa8.13□□□□□ -1.11
SCFD1-208ENST00000553278 FANCLQ9NW38 375 aa8.13□□□□□ -1.11
SCFD1-208ENST00000553278 PPT2Q9UMR5 302 aa8.13□□□□□ -1.11
SCFD1-208ENST00000553278 DYRK1BQ9Y463 629 aa8.13□□□□□ -1.11
SCFD1-208ENST00000553278 TNFRSF10AO00220 468 aa8.12□□□□□ -1.11
SCFD1-208ENST00000553278 ENC1O14682 589 aa8.12□□□□□ -1.11
SCFD1-208ENST00000553278 FAM157BP0CG42 384 aa8.12□□□□□ -1.11
SCFD1-208ENST00000553278 GRIA4P48058 902 aa8.12□□□□□ -1.11
SCFD1-208ENST00000553278 RPS26P11Q5JNZ5 115 aaPredicted RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms