RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 GPAA1O43292 621 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 PRKAB2O43741 272 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 FGAP02671 866 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 KRT85P78386 507 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 CTDSPL2Q05D32 466 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 SUSD4Q5VX71 490 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 VPS37DQ86XT2 251 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 TTLL11Q8NHH1 800 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 NUP133Q8WUM0 1156 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 WWC3Q9ULE0 1092 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 U3KPZ7 1027 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-215ENST00000552823 CAMTA1Q9Y6Y1 1673 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 ZNF609O15014 1411 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 LMTK3Q96Q04 1460 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 B4E1Z4 1266 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 BIN1O00499 593 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 PRDM1O75626 825 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 NKX2-3Q8TAU0 364 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 ARMT1Q9H993 441 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 LRP2BPQ9P2M1 347 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 ATP6V1DQ9Y5K8 247 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 TCHHQ07283 1943 aa6.6□□□□□ -1.35
LIMA1-215ENST00000552823 BAZ2BQ9UIF8 2168 aaKnown RBP6.6□□□□□ -1.35
LIMA1-215ENST00000552823 PTPDC1A2A3K4 754 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 GOLGA8BA8MQT2 603 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 MCAMP43121 646 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 ME1P48163 572 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 RABL6Q3YEC7 729 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-215ENST00000552823 GIGYF2Q6Y7W6 1299 aaKnown RBP6.59□□□□□ -1.35
LIMA1-215ENST00000552823 MAGEB6Q8N7X4 407 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 PHKBQ93100 1093 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 SENP2Q9HC62 589 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 PIH1D3Q9NQM4 214 aaKnown RBP6.59□□□□□ -1.35
LIMA1-215ENST00000552823 SH2B1Q9NRF2 756 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-215ENST00000552823 RAI14Q9P0K7 980 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 SOS2Q07890 1332 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-215ENST00000552823 ZNF213O14771 459 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 PRC1O43663 620 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 CYP19A1P11511 503 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-215ENST00000552823 ADD1P35611 737 aaKnown RBP6.59□□□□□ -1.35
LIMA1-215ENST00000552823 GYG1P46976 350 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 CCDC173Q0VFZ6 552 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 AIDAQ96BJ3 306 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 TFCP2L1Q9NZI6 479 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 SRP68Q9UHB9 627 aaKnown RBP6.59□□□□□ -1.35
LIMA1-215ENST00000552823 UTYO14607 1347 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 ADCY5O95622 1261 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 MARCKSP29966 332 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-215ENST00000552823 CRKLP46109 303 aaKnown RBP6.59□□□□□ -1.35
LIMA1-215ENST00000552823 TRDNQ13061 729 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 DHX32Q7L7V1 743 aaKnown RBP6.59□□□□□ -1.35
LIMA1-215ENST00000552823 LUZP1Q86V48 1076 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 ZBTB38Q8NAP3 1195 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-215ENST00000552823 TSC1Q92574 1164 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 GPR101Q96P66 508 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-215ENST00000552823 ISCA1Q9BUE6 129 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 TNMDQ9H2S6 317 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 PODXL2Q9NZ53 605 aa6.59□□□□□ -1.35
LIMA1-215ENST00000552823 MAP3K15Q6ZN16 1313 aa6.59□□□□□ -1.36
LIMA1-215ENST00000552823 ZNF532Q9HCE3 1301 aa6.59□□□□□ -1.36
LIMA1-215ENST00000552823 CYP2D7A0A087X1C5 515 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 UBAP1LF5GYI3 381 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 PTPN21Q16825 1174 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 IMMTQ16891 758 aaKnown RBP6.58□□□□□ -1.36
LIMA1-215ENST00000552823 HSP90AA4PQ58FG1 418 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 CCDC183Q5T5S1 534 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 CCDC102BQ68D86 513 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 NCAPD2Q15021 1401 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 LOC102724428A0A0B4J2F2 783 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 MBD4O95243 580 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 TDO2P48775 406 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 CTSWP56202 376 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 SIK1P57059 783 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 ZNF445P59923 1031 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 UBE2HP62256 183 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 ITPK1Q13572 414 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 ANKRD1Q15327 319 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 SPECC1Q5M775 1068 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 ZMYM1Q5SVZ6 1142 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 MARCH10Q8NA82 808 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-215ENST00000552823 SDR42E1Q8WUS8 393 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 NUP62CLQ9H1M0 184 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 ORC3Q9UBD5 711 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-215ENST00000552823 AKAP2Q9Y2D5 859 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 SRCAPQ6ZRS2 3230 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 NR1I2O75469 434 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 PCCAP05165 728 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-215ENST00000552823 KRT32Q14532 448 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 DNAJC25Q9H1X3 360 aa6.58□□□□□ -1.36
LIMA1-215ENST00000552823 UBN2Q6ZU65 1347 aa6.57□□□□□ -1.36
LIMA1-215ENST00000552823 USP42Q9H9J4 1324 aaKnown RBP6.57□□□□□ -1.36
LIMA1-215ENST00000552823 A0A1B0GVL5 298 aa6.57□□□□□ -1.36
LIMA1-215ENST00000552823 PDCP20941 246 aa6.57□□□□□ -1.36
LIMA1-215ENST00000552823 USP28Q96RU2 1077 aa6.57□□□□□ -1.36
LIMA1-215ENST00000552823 SDF4Q9BRK5 362 aa6.57□□□□□ -1.36
LIMA1-215ENST00000552823 TM6SF1Q9BZW5 370 aa6.57□□□□□ -1.36
LIMA1-215ENST00000552823 IGHMBP2P38935 993 aaKnown RBP6.57□□□□□ -1.36
LIMA1-215ENST00000552823 STK38Q15208 465 aa6.57□□□□□ -1.36
LIMA1-215ENST00000552823 C3orf67Q6ZVT6 689 aa6.57□□□□□ -1.36
LIMA1-215ENST00000552823 LEO1Q8WVC0 666 aaPredicted RBP6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms