RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 HSP90AA1P07900 732 aaKnown RBP7.15□□□□□ -1.26
CD44-236ENST00000533222 HOXD8P13378 290 aaPredicted RBP7.15□□□□□ -1.26
CD44-236ENST00000533222 ATP11AP98196 1134 aa7.15□□□□□ -1.26
CD44-236ENST00000533222 PLCB3Q01970 1234 aa7.15□□□□□ -1.26
CD44-236ENST00000533222 SLC20A2Q08357 652 aa7.15□□□□□ -1.26
CD44-236ENST00000533222 ENOX2Q16206 610 aaKnown RBP7.15□□□□□ -1.26
CD44-236ENST00000533222 C8orf86Q6ZUL3 223 aa7.15□□□□□ -1.26
CD44-236ENST00000533222 SVOPQ8N4V2 548 aa7.15□□□□□ -1.26
CD44-236ENST00000533222 RGS22Q8NE09 1264 aa7.15□□□□□ -1.26
CD44-236ENST00000533222 FOXD4L4Q8WXT5 416 aaPredicted RBP7.15□□□□□ -1.26
CD44-236ENST00000533222 SECISBP2LQ93073 1101 aaKnown RBP7.15□□□□□ -1.26
CD44-236ENST00000533222 HHIPQ96QV1 700 aa7.15□□□□□ -1.26
CD44-236ENST00000533222 AMOTL2Q9Y2J4 779 aa7.15□□□□□ -1.26
CD44-236ENST00000533222 CPNE3O75131 537 aaKnown RBP7.14□□□□□ -1.27
CD44-236ENST00000533222 KIF4AO95239 1232 aa7.14□□□□□ -1.27
CD44-236ENST00000533222 ALBP02768 609 aa7.14□□□□□ -1.27
CD44-236ENST00000533222 EIF2AK2P19525 551 aaKnown RBP7.14□□□□□ -1.27
CD44-236ENST00000533222 PERM1Q5SV97 790 aa7.14□□□□□ -1.27
CD44-236ENST00000533222 ADAMTSL4Q6UY14 1074 aa7.14□□□□□ -1.27
CD44-236ENST00000533222 FBXO33Q7Z6M2 555 aa7.14□□□□□ -1.27
CD44-236ENST00000533222 FAM35AQ86V20 835 aa7.14□□□□□ -1.27
CD44-236ENST00000533222 SMAP1Q8IYB5 467 aaPredicted RBP7.14□□□□□ -1.27
CD44-236ENST00000533222 NPHS2Q9NP85 383 aa7.14□□□□□ -1.27
CD44-236ENST00000533222 SALL4Q9UJQ4 1053 aa7.14□□□□□ -1.27
CD44-236ENST00000533222 LOC102724428A0A0B4J2F2 783 aa7.13□□□□□ -1.27
CD44-236ENST00000533222 SIK1P57059 783 aa7.13□□□□□ -1.27
CD44-236ENST00000533222 HYAL2Q12891 473 aa7.13□□□□□ -1.27
CD44-236ENST00000533222 PEAR1Q5VY43 1037 aaPredicted RBP7.13□□□□□ -1.27
CD44-236ENST00000533222 CHSY3Q70JA7 882 aa7.13□□□□□ -1.27
CD44-236ENST00000533222 NCAPG2Q86XI2 1143 aa7.13□□□□□ -1.27
CD44-236ENST00000533222 NUDT8Q8WV74 236 aa7.13□□□□□ -1.27
CD44-236ENST00000533222 LPIN3Q9BQK8 851 aa7.13□□□□□ -1.27
CD44-236ENST00000533222 MAFGO15525 162 aa7.12□□□□□ -1.27
CD44-236ENST00000533222 ARHGEF15O94989 841 aa7.12□□□□□ -1.27
CD44-236ENST00000533222 HOXB4P17483 251 aaPredicted RBP7.12□□□□□ -1.27
CD44-236ENST00000533222 PSAPL1Q6NUJ1 521 aa7.12□□□□□ -1.27
CD44-236ENST00000533222 MTERF4Q7Z6M4 381 aaKnown RBP7.12□□□□□ -1.27
CD44-236ENST00000533222 EPS8L3Q8TE67 593 aaKnown RBP7.12□□□□□ -1.27
CD44-236ENST00000533222 CCDC74AQ96AQ1 378 aa7.12□□□□□ -1.27
CD44-236ENST00000533222 BTBD6Q96KE9 485 aa7.12□□□□□ -1.27
CD44-236ENST00000533222 RASSF4Q9H2L5 321 aa7.12□□□□□ -1.27
CD44-236ENST00000533222 LDHBP07195 334 aaKnown RBP7.11□□□□□ -1.27
CD44-236ENST00000533222 EAPPQ56P03 285 aaPredicted RBP7.11□□□□□ -1.27
CD44-236ENST00000533222 GALNT12Q8IXK2 581 aa7.11□□□□□ -1.27
CD44-236ENST00000533222 ZSCAN1Q8NBB4 408 aa7.11□□□□□ -1.27
CD44-236ENST00000533222 ZKSCAN3Q9BRR0 538 aa7.11□□□□□ -1.27
CD44-236ENST00000533222 SMG9Q9H0W8 520 aaKnown RBP7.11□□□□□ -1.27
CD44-236ENST00000533222 DNAJC25Q9H1X3 360 aa7.11□□□□□ -1.27
CD44-236ENST00000533222 CHMP4BQ9H444 224 aaKnown RBP7.11□□□□□ -1.27
CD44-236ENST00000533222 GOLGA6L3A6NEY3 463 aa7.1□□□□□ -1.27
CD44-236ENST00000533222 NFKBIEO00221 500 aa7.1□□□□□ -1.27
CD44-236ENST00000533222 AMPD1P23109 780 aa7.1□□□□□ -1.27
CD44-236ENST00000533222 MAP3K10Q02779 954 aa7.1□□□□□ -1.27
CD44-236ENST00000533222 C20orf204Q6ZNR8 217 aa7.1□□□□□ -1.27
CD44-236ENST00000533222 GIPC2Q8TF65 315 aa7.1□□□□□ -1.27
CD44-236ENST00000533222 PLD4Q96BZ4 506 aa7.1□□□□□ -1.27
CD44-236ENST00000533222 BCL2L13Q9BXK5 485 aa7.1□□□□□ -1.27
CD44-236ENST00000533222 DZANK1Q9NVP4 752 aa7.1□□□□□ -1.27
CD44-236ENST00000533222 TRIM33Q9UPN9 1127 aa7.1□□□□□ -1.27
CD44-236ENST00000533222 A0A1W2PP55 124 aa7.09□□□□□ -1.27
CD44-236ENST00000533222 METTL12A8MUP2 240 aa7.09□□□□□ -1.27
CD44-236ENST00000533222 M0R082 166 aa7.09□□□□□ -1.27
CD44-236ENST00000533222 KIF20AO95235 890 aa7.09□□□□□ -1.27
CD44-236ENST00000533222 GHRHP01286 108 aa7.09□□□□□ -1.27
CD44-236ENST00000533222 TPM2P07951 284 aa7.09□□□□□ -1.27
CD44-236ENST00000533222 ALAS2P22557 587 aa7.09□□□□□ -1.27
CD44-236ENST00000533222 TERF1P54274 439 aa7.09□□□□□ -1.27
CD44-236ENST00000533222 SNRPNP63162 240 aaKnown RBP7.09□□□□□ -1.27
CD44-236ENST00000533222 GRIK5Q16478 980 aa7.09□□□□□ -1.27
CD44-236ENST00000533222 ELMSAN1Q6PJG2 1045 aa7.09□□□□□ -1.27
CD44-236ENST00000533222 CNPY4Q8N129 248 aa7.09□□□□□ -1.27
CD44-236ENST00000533222 MICALL1Q8N3F8 863 aa7.09□□□□□ -1.27
CD44-236ENST00000533222 ZNF417Q8TAU3 575 aa7.09□□□□□ -1.27
CD44-236ENST00000533222 FAM161BQ96MY7 647 aa7.09□□□□□ -1.27
CD44-236ENST00000533222 ZNF587Q96SQ5 575 aaPredicted RBP7.09□□□□□ -1.27
CD44-236ENST00000533222 DNAJC2Q99543 621 aaKnown RBP7.09□□□□□ -1.27
CD44-236ENST00000533222 OSMRQ99650 979 aa7.09□□□□□ -1.27
CD44-236ENST00000533222 YY1AP1Q9H869 796 aa7.09□□□□□ -1.27
CD44-236ENST00000533222 JPH1Q9HDC5 661 aaPredicted RBP7.09□□□□□ -1.27
CD44-236ENST00000533222 NISCHQ9Y2I1 1504 aa7.08□□□□□ -1.28
CD44-236ENST00000533222 IGSF3O75054 1194 aa7.08□□□□□ -1.28
CD44-236ENST00000533222 EDN3P14138 238 aa7.08□□□□□ -1.28
CD44-236ENST00000533222 DGKGP49619 791 aa7.08□□□□□ -1.28
CD44-236ENST00000533222 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.08□□□□□ -1.28
CD44-236ENST00000533222 NEDD1Q8NHV4 660 aa7.08□□□□□ -1.28
CD44-236ENST00000533222 PMEPA1Q969W9 287 aa7.08□□□□□ -1.28
CD44-236ENST00000533222 ZNF428Q96B54 188 aa7.08□□□□□ -1.28
CD44-236ENST00000533222 DUSP9Q99956 384 aaKnown RBP7.08□□□□□ -1.28
CD44-236ENST00000533222 PBX4Q9BYU1 374 aa7.08□□□□□ -1.28
CD44-236ENST00000533222 ERCC3P19447 782 aa7.07□□□□□ -1.28
CD44-236ENST00000533222 FAM193AP78312 1265 aa7.07□□□□□ -1.28
CD44-236ENST00000533222 COL9A3Q14050 684 aaPredicted RBP7.07□□□□□ -1.28
CD44-236ENST00000533222 GRM2Q14416 872 aa7.07□□□□□ -1.28
CD44-236ENST00000533222 COL19A1Q14993 1142 aa7.07□□□□□ -1.28
CD44-236ENST00000533222 PCSK7Q16549 785 aa7.07□□□□□ -1.28
CD44-236ENST00000533222 CEP135Q66GS9 1140 aa7.07□□□□□ -1.28
CD44-236ENST00000533222 GDF6Q6KF10 455 aaPredicted RBP7.07□□□□□ -1.28
CD44-236ENST00000533222 SPACA7Q96KW9 195 aa7.07□□□□□ -1.28
CD44-236ENST00000533222 POP1Q99575 1024 aaKnown RBP7.07□□□□□ -1.28
CD44-236ENST00000533222 LACRTQ9GZZ8 138 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms