RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 MAST3O60307 1309 aa22.64■■□□□ 1.21
VPS28-213ENST00000530983 E7EWF7 191 aa22.64■■□□□ 1.21
VPS28-213ENST00000530983 FOSBP53539 338 aa22.64■■□□□ 1.21
VPS28-213ENST00000530983 TICAM2Q86XR7 235 aa22.64■■□□□ 1.21
VPS28-213ENST00000530983 NRBP1Q9UHY1 535 aa22.64■■□□□ 1.21
VPS28-213ENST00000530983 RCOR1Q9UKL0 485 aa22.64■■□□□ 1.21
VPS28-213ENST00000530983 TNS3Q68CZ2 1445 aa22.63■■□□□ 1.21
VPS28-213ENST00000530983 CCT2P78371 535 aaKnown RBP22.63■■□□□ 1.21
VPS28-213ENST00000530983 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.63■■□□□ 1.21
VPS28-213ENST00000530983 ZNF594Q96JF6 807 aaPredicted RBP22.63■■□□□ 1.21
VPS28-213ENST00000530983 NCOA5Q9HCD5 579 aaKnown RBP22.63■■□□□ 1.21
VPS28-213ENST00000530983 KIF3AQ9Y496 699 aa22.63■■□□□ 1.21
VPS28-213ENST00000530983 EYA2O00167 538 aa22.62■■□□□ 1.21
VPS28-213ENST00000530983 LRMPQ12912 555 aa22.62■■□□□ 1.21
VPS28-213ENST00000530983 IFIT1P09914 478 aaKnown RBP22.62■■□□□ 1.21
VPS28-213ENST00000530983 GOLPH3LQ9H4A5 285 aa22.62■■□□□ 1.21
VPS28-213ENST00000530983 A0A1B0GUL7 405 aa22.61■■□□□ 1.21
VPS28-213ENST00000530983 RNF113AO15541 343 aaKnown RBP22.61■■□□□ 1.21
VPS28-213ENST00000530983 CAVIN2O95810 425 aa22.61■■□□□ 1.21
VPS28-213ENST00000530983 DRC7Q8IY82 874 aa22.61■■□□□ 1.21
VPS28-213ENST00000530983 USP28Q96RU2 1077 aa22.61■■□□□ 1.21
VPS28-213ENST00000530983 A1BGP04217 495 aa22.6■■□□□ 1.21
VPS28-213ENST00000530983 PDIA3P30101 505 aaKnown RBP22.6■■□□□ 1.21
VPS28-213ENST00000530983 CCAR1Q8IX12 1150 aaKnown RBP22.6■■□□□ 1.21
VPS28-213ENST00000530983 SNW1Q13573 536 aaKnown RBP22.6■■□□□ 1.21
VPS28-213ENST00000530983 IQCB1Q15051 598 aa22.6■■□□□ 1.21
VPS28-213ENST00000530983 CHST3Q7LGC8 479 aa22.6■■□□□ 1.21
VPS28-213ENST00000530983 ZBTB3Q9H5J0 574 aa22.6■■□□□ 1.21
VPS28-213ENST00000530983 KCPQ6ZWJ8 1503 aa22.6■■□□□ 1.21
VPS28-213ENST00000530983 FAM177BA6PVY3 158 aa22.59■■□□□ 1.21
VPS28-213ENST00000530983 M0R2C6 588 aa22.59■■□□□ 1.21
VPS28-213ENST00000530983 PPFIA3O75145 1194 aa22.59■■□□□ 1.21
VPS28-213ENST00000530983 ZSCAN25Q6NSZ9 544 aa22.59■■□□□ 1.21
VPS28-213ENST00000530983 ILDR1Q86SU0 546 aaPredicted RBP22.59■■□□□ 1.21
VPS28-213ENST00000530983 CCDC191Q8NCU4 936 aa22.59■■□□□ 1.21
VPS28-213ENST00000530983 ZNF274Q96GC6 653 aaPredicted RBP22.59■■□□□ 1.21
VPS28-213ENST00000530983 NWD2Q9ULI1 1742 aa22.59■■□□□ 1.21
VPS28-213ENST00000530983 CPDO75976 1380 aa22.59■■□□□ 1.21
VPS28-213ENST00000530983 CIAO1O76071 339 aa22.59■■□□□ 1.21
VPS28-213ENST00000530983 C11orf57Q6ZUT1 292 aaPredicted RBP22.59■■□□□ 1.21
VPS28-213ENST00000530983 CADPS2Q86UW7 1296 aa22.59■■□□□ 1.21
VPS28-213ENST00000530983 PUS3Q9BZE2 481 aaKnown RBP22.59■■□□□ 1.21
VPS28-213ENST00000530983 STRCP1A6NGW2 1772 aa22.59■■□□□ 1.21
VPS28-213ENST00000530983 TTLL5Q6EMB2 1281 aa22.58■■□□□ 1.21
VPS28-213ENST00000530983 RIOK3O14730 519 aaKnown RBP22.58■■□□□ 1.2
VPS28-213ENST00000530983 CHAF1AQ13111 956 aaPredicted RBP22.58■■□□□ 1.2
VPS28-213ENST00000530983 ATL3Q6DD88 541 aa22.58■■□□□ 1.2
VPS28-213ENST00000530983 ATG3Q9NT62 314 aa22.58■■□□□ 1.2
VPS28-213ENST00000530983 CLIP2Q9UDT6 1046 aa22.58■■□□□ 1.2
VPS28-213ENST00000530983 NAP1L2Q9ULW6 460 aaPredicted RBP22.58■■□□□ 1.2
VPS28-213ENST00000530983 PAPPAQ13219 1627 aa22.58■■□□□ 1.2
VPS28-213ENST00000530983 CARMIL3Q8ND23 1372 aa22.57■■□□□ 1.2
VPS28-213ENST00000530983 CTAGE5O15320 804 aa22.57■■□□□ 1.2
VPS28-213ENST00000530983 ENGASEQ8NFI3 743 aa22.57■■□□□ 1.2
VPS28-213ENST00000530983 OSBP2Q969R2 916 aa22.57■■□□□ 1.2
VPS28-213ENST00000530983 BCL2L12Q9HB09 334 aa22.57■■□□□ 1.2
VPS28-213ENST00000530983 GUCY1B3Q02153 619 aa22.57■■□□□ 1.2
VPS28-213ENST00000530983 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.57■■□□□ 1.2
VPS28-213ENST00000530983 SPATA31A3Q5VYP0 1347 aa22.56■■□□□ 1.2
VPS28-213ENST00000530983 PCDH11XQ9BZA7 1347 aa22.56■■□□□ 1.2
VPS28-213ENST00000530983 PCDH11YQ9BZA8 1340 aa22.56■■□□□ 1.2
VPS28-213ENST00000530983 FDPSP14324 419 aaKnown RBP22.56■■□□□ 1.2
VPS28-213ENST00000530983 CDC25BP30305 580 aa22.56■■□□□ 1.2
VPS28-213ENST00000530983 STX1AQ16623 288 aa22.56■■□□□ 1.2
VPS28-213ENST00000530983 CCDC144BQ3MJ40 725 aa22.56■■□□□ 1.2
VPS28-213ENST00000530983 SARM1Q6SZW1 724 aa22.56■■□□□ 1.2
VPS28-213ENST00000530983 CCDC144CPQ8IYA2 1237 aa22.56■■□□□ 1.2
VPS28-213ENST00000530983 FBXL16Q8N461 479 aa22.56■■□□□ 1.2
VPS28-213ENST00000530983 ZNF396Q96N95 335 aaPredicted RBP22.56■■□□□ 1.2
VPS28-213ENST00000530983 FOXP2O15409 715 aa22.56■■□□□ 1.2
VPS28-213ENST00000530983 ZSCAN20P17040 1043 aaPredicted RBP22.56■■□□□ 1.2
VPS28-213ENST00000530983 DMTNQ08495 405 aa22.56■■□□□ 1.2
VPS28-213ENST00000530983 CCDC73Q6ZRK6 1079 aa22.56■■□□□ 1.2
VPS28-213ENST00000530983 EVCP57679 992 aa22.55■■□□□ 1.2
VPS28-213ENST00000530983 FAM160A1Q05DH4 1040 aa22.55■■□□□ 1.2
VPS28-213ENST00000530983 CACTINQ8WUQ7 758 aaKnown RBP22.55■■□□□ 1.2
VPS28-213ENST00000530983 ZHX1Q9UKY1 873 aaPredicted RBP22.55■■□□□ 1.2
VPS28-213ENST00000530983 ZCRB1Q8TBF4 217 aaKnown RBP22.54■■□□□ 1.2
VPS28-213ENST00000530983 GPHNQ9NQX3 736 aaPredicted RBP22.54■■□□□ 1.2
VPS28-213ENST00000530983 ERVV-2B6SEH9 535 aa22.54■■□□□ 1.2
VPS28-213ENST00000530983 GOLGA6L19H0YKK7 550 aa22.54■■□□□ 1.2
VPS28-213ENST00000530983 FKBP4Q02790 459 aaKnown RBP eCLIP22.54■■□□□ 1.2
VPS28-213ENST00000530983 UTP14CQ5TAP6 766 aaKnown RBP22.53■■□□□ 1.2
VPS28-213ENST00000530983 CEP126Q9P2H0 1117 aa22.53■■□□□ 1.2
VPS28-213ENST00000530983 DDX60Q8IY21 1712 aaKnown RBP22.53■■□□□ 1.2
VPS28-213ENST00000530983 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.53■■□□□ 1.2
VPS28-213ENST00000530983 KINO60870 393 aaKnown RBP22.53■■□□□ 1.2
VPS28-213ENST00000530983 ME1P48163 572 aa22.53■■□□□ 1.2
VPS28-213ENST00000530983 A0A087WWV3 80 aa22.52■■□□□ 1.2
VPS28-213ENST00000530983 ADORA1P30542 326 aa22.52■■□□□ 1.2
VPS28-213ENST00000530983 FSIP1Q8NA03 581 aa22.52■■□□□ 1.2
VPS28-213ENST00000530983 MRFAP1L1Q96HT8 127 aa22.52■■□□□ 1.2
VPS28-213ENST00000530983 CTIFO43310 598 aaKnown RBP22.52■■□□□ 1.2
VPS28-213ENST00000530983 DHX40Q8IX18 779 aaKnown RBP22.52■■□□□ 1.2
VPS28-213ENST00000530983 C16orf45Q96MC5 204 aaPredicted RBP22.52■■□□□ 1.2
VPS28-213ENST00000530983 WDR17Q8IZU2 1322 aa22.51■■□□□ 1.19
VPS28-213ENST00000530983 HAND2P61296 217 aa22.51■■□□□ 1.19
VPS28-213ENST00000530983 ISCA1Q9BUE6 129 aa22.51■■□□□ 1.19
VPS28-213ENST00000530983 PCDHA7Q9UN72 937 aa22.51■■□□□ 1.19
VPS28-213ENST00000530983 CCDC158Q5M9N0 1113 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms