RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ADAMTS1Q9UHI8 967 aa11.29□□□□□ -0.6
NUP54-215ENST00000514313 NFKBIEO00221 500 aa11.28□□□□□ -0.6
NUP54-215ENST00000514313 ATF4P18848 351 aaPredicted RBP11.28□□□□□ -0.6
NUP54-215ENST00000514313 MLLT1Q03111 559 aaPredicted RBP11.28□□□□□ -0.6
NUP54-215ENST00000514313 MAP3K11Q16584 847 aa11.28□□□□□ -0.6
NUP54-215ENST00000514313 SPRED3Q2MJR0 410 aa11.28□□□□□ -0.6
NUP54-215ENST00000514313 FAM182BQ5T319 152 aa11.28□□□□□ -0.6
NUP54-215ENST00000514313 VPS37DQ86XT2 251 aa11.28□□□□□ -0.6
NUP54-215ENST00000514313 RELL1Q8IUW5 271 aa11.28□□□□□ -0.6
NUP54-215ENST00000514313 KIAA0825Q8IV33 1275 aa11.28□□□□□ -0.6
NUP54-215ENST00000514313 FAM177A1Q8N128 213 aaPredicted RBP11.28□□□□□ -0.6
NUP54-215ENST00000514313 BHLHE41Q9C0J9 482 aaPredicted RBP11.28□□□□□ -0.6
NUP54-215ENST00000514313 CELA3AP09093 270 aa11.27□□□□□ -0.61
NUP54-215ENST00000514313 ITPKAP23677 461 aa11.27□□□□□ -0.61
NUP54-215ENST00000514313 GBP2P32456 591 aaPredicted RBP11.27□□□□□ -0.61
NUP54-215ENST00000514313 GPLD1P80108 840 aa11.27□□□□□ -0.61
NUP54-215ENST00000514313 PWP1Q13610 501 aa11.27□□□□□ -0.61
NUP54-215ENST00000514313 SV2BQ7L1I2 683 aa11.27□□□□□ -0.61
NUP54-215ENST00000514313 TMEM74Q96NL1 305 aa11.27□□□□□ -0.61
NUP54-215ENST00000514313 LNPKQ9C0E8 428 aa11.27□□□□□ -0.61
NUP54-215ENST00000514313 MINDY4BA8MYZ0 360 aa11.26□□□□□ -0.61
NUP54-215ENST00000514313 ZBTB42B2RXF5 422 aa11.26□□□□□ -0.61
NUP54-215ENST00000514313 TMEM102Q8N9M5 508 aaPredicted RBP11.26□□□□□ -0.61
NUP54-215ENST00000514313 RASGRP4Q8TDF6 673 aa11.26□□□□□ -0.61
NUP54-215ENST00000514313 KIFC2Q96AC6 838 aa11.26□□□□□ -0.61
NUP54-215ENST00000514313 SPACA7Q96KW9 195 aa11.26□□□□□ -0.61
NUP54-215ENST00000514313 SENP2Q9HC62 589 aa11.26□□□□□ -0.61
NUP54-215ENST00000514313 J3QW42 95 aa11.25□□□□□ -0.61
NUP54-215ENST00000514313 ATP11AP98196 1134 aa11.25□□□□□ -0.61
NUP54-215ENST00000514313 NEUROD1Q13562 356 aa11.25□□□□□ -0.61
NUP54-215ENST00000514313 HFE2Q6ZVN8 426 aa11.25□□□□□ -0.61
NUP54-215ENST00000514313 TRPM4Q8TD43 1214 aa11.25□□□□□ -0.61
NUP54-215ENST00000514313 RHOVQ96L33 236 aa11.25□□□□□ -0.61
NUP54-215ENST00000514313 TRIM47Q96LD4 638 aa11.25□□□□□ -0.61
NUP54-215ENST00000514313 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.25□□□□□ -0.61
NUP54-215ENST00000514313 RASSF4Q9H2L5 321 aa11.25□□□□□ -0.61
NUP54-215ENST00000514313 PHF24Q9UPV7 400 aa11.25□□□□□ -0.61
NUP54-215ENST00000514313 LOC102724428A0A0B4J2F2 783 aa11.24□□□□□ -0.61
NUP54-215ENST00000514313 GPR25O00155 361 aa11.24□□□□□ -0.61
NUP54-215ENST00000514313 EIF4A3P38919 411 aaKnown RBP11.24□□□□□ -0.61
NUP54-215ENST00000514313 LIG3P49916 1009 aa11.24□□□□□ -0.61
NUP54-215ENST00000514313 SIK1P57059 783 aa11.24□□□□□ -0.61
NUP54-215ENST00000514313 CTBSQ01459 385 aa11.24□□□□□ -0.61
NUP54-215ENST00000514313 NXPE3Q969Y0 559 aa11.24□□□□□ -0.61
NUP54-215ENST00000514313 A0A096LPE4 126 aa11.23□□□□□ -0.61
NUP54-215ENST00000514313 A0A1W2PPZ6 126 aa11.23□□□□□ -0.61
NUP54-215ENST00000514313 PDE2AO00408 941 aaPredicted RBP11.23□□□□□ -0.61
NUP54-215ENST00000514313 ENC1O14682 589 aa11.23□□□□□ -0.61
NUP54-215ENST00000514313 SMARCA5O60264 1052 aaPredicted RBP11.23□□□□□ -0.61
NUP54-215ENST00000514313 RLBP1P12271 317 aa11.23□□□□□ -0.61
NUP54-215ENST00000514313 PHC3Q8NDX5 983 aa11.23□□□□□ -0.61
NUP54-215ENST00000514313 ASAP3Q8TDY4 903 aa11.23□□□□□ -0.61
NUP54-215ENST00000514313 ZNF576Q9H609 170 aa11.23□□□□□ -0.61
NUP54-215ENST00000514313 IGFLR1Q9H665 355 aa11.23□□□□□ -0.61
NUP54-215ENST00000514313 ZFYVE1Q9HBF4 777 aa11.23□□□□□ -0.61
NUP54-215ENST00000514313 TLR6Q9Y2C9 796 aa11.23□□□□□ -0.61
NUP54-215ENST00000514313 FAAP100Q0VG06 881 aa11.22□□□□□ -0.61
NUP54-215ENST00000514313 LAPTM4AQ15012 233 aa11.22□□□□□ -0.61
NUP54-215ENST00000514313 PMFBP1Q8TBY8 1022 aa11.22□□□□□ -0.61
NUP54-215ENST00000514313 EAF1Q96JC9 268 aaPredicted RBP11.22□□□□□ -0.61
NUP54-215ENST00000514313 NECAB3Q96P71 396 aaPredicted RBP11.22□□□□□ -0.61
NUP54-215ENST00000514313 PBX4Q9BYU1 374 aa11.22□□□□□ -0.61
NUP54-215ENST00000514313 CEP44Q9C0F1 390 aa11.22□□□□□ -0.61
NUP54-215ENST00000514313 DNAJB12Q9NXW2 375 aaKnown RBP11.22□□□□□ -0.61
NUP54-215ENST00000514313 GMPR2Q9P2T1 348 aaKnown RBP11.22□□□□□ -0.61
NUP54-215ENST00000514313 CDC14CA4D256 554 aa11.21□□□□□ -0.61
NUP54-215ENST00000514313 FAM160A1Q05DH4 1040 aa11.21□□□□□ -0.61
NUP54-215ENST00000514313 RBL2Q08999 1139 aa11.21□□□□□ -0.61
NUP54-215ENST00000514313 TBC1D8BQ0IIM8 1120 aa11.21□□□□□ -0.61
NUP54-215ENST00000514313 SYT9Q86SS6 491 aa11.21□□□□□ -0.61
NUP54-215ENST00000514313 ZNF296Q8WUU4 475 aaPredicted RBP11.21□□□□□ -0.61
NUP54-215ENST00000514313 SPATA32Q96LK8 384 aa11.21□□□□□ -0.61
NUP54-215ENST00000514313 TRERF1Q96PN7 1200 aa11.21□□□□□ -0.61
NUP54-215ENST00000514313 UBE2OQ9C0C9 1292 aaKnown RBP11.21□□□□□ -0.61
NUP54-215ENST00000514313 SEC31BQ9NQW1 1179 aa11.21□□□□□ -0.61
NUP54-215ENST00000514313 PRR12Q9ULL5 1215 aa11.21□□□□□ -0.61
NUP54-215ENST00000514313 GHRHP01286 108 aa11.2□□□□□ -0.62
NUP54-215ENST00000514313 GARTP22102 1010 aa11.2□□□□□ -0.62
NUP54-215ENST00000514313 GIMAP6Q6P9H5 292 aa11.2□□□□□ -0.62
NUP54-215ENST00000514313 FBXL19Q6PCT2 694 aa11.2□□□□□ -0.62
NUP54-215ENST00000514313 KCNQ5Q9NR82 932 aa11.2□□□□□ -0.62
NUP54-215ENST00000514313 GPN3Q9UHW5 284 aaPredicted RBP11.2□□□□□ -0.62
NUP54-215ENST00000514313 PAGE1O75459 146 aa11.19□□□□□ -0.62
NUP54-215ENST00000514313 STK10O94804 968 aaKnown RBP11.19□□□□□ -0.62
NUP54-215ENST00000514313 PF4P02776 101 aa11.19□□□□□ -0.62
NUP54-215ENST00000514313 SNRPBP14678 240 aaKnown RBP11.19□□□□□ -0.62
NUP54-215ENST00000514313 EIF2AK2P19525 551 aaKnown RBP11.19□□□□□ -0.62
NUP54-215ENST00000514313 ZNF468Q5VIY5 522 aaPredicted RBP11.19□□□□□ -0.62
NUP54-215ENST00000514313 MUC3BQ9H195 1237 aa11.19□□□□□ -0.62
NUP54-215ENST00000514313 PPFIA3O75145 1194 aa11.18□□□□□ -0.62
NUP54-215ENST00000514313 NASPP49321 788 aaPredicted RBP11.18□□□□□ -0.62
NUP54-215ENST00000514313 CCDC144BQ3MJ40 725 aa11.18□□□□□ -0.62
NUP54-215ENST00000514313 RPS26P11Q5JNZ5 115 aaPredicted RBP11.18□□□□□ -0.62
NUP54-215ENST00000514313 TTBK2Q6IQ55 1244 aa11.18□□□□□ -0.62
NUP54-215ENST00000514313 SEC16BQ96JE7 1060 aa11.18□□□□□ -0.62
NUP54-215ENST00000514313 POP1Q99575 1024 aaKnown RBP11.18□□□□□ -0.62
NUP54-215ENST00000514313 HIRIP3Q9BW71 556 aaPredicted RBP11.18□□□□□ -0.62
NUP54-215ENST00000514313 SUPT16HQ9Y5B9 1047 aaKnown RBP11.18□□□□□ -0.62
NUP54-215ENST00000514313 C2CD2LO14523 706 aa11.17□□□□□ -0.62
NUP54-215ENST00000514313 FOXR1Q6PIV2 292 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms