RNA–Protein interactions for RNA: ENST00000508171.5

LIN54-207, Transcript of lin-54 DREAM MuvB core complex component, humanhuman

TSL 1 (best)

Gene LIN54, Length 2,684 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN54-207ENST00000508171 PI16Q6UXB8 463 aa12.88□□□□□ -0.35
LIN54-207ENST00000508171 GPHNQ9NQX3 736 aaPredicted RBP12.88□□□□□ -0.35
LIN54-207ENST00000508171 TMOD3Q9NYL9 352 aa12.88□□□□□ -0.35
LIN54-207ENST00000508171 ADD1P35611 737 aaKnown RBP12.88□□□□□ -0.35
LIN54-207ENST00000508171 HSP90AB3PQ58FF7 597 aa12.88□□□□□ -0.35
LIN54-207ENST00000508171 SPC24Q8NBT2 197 aa12.88□□□□□ -0.35
LIN54-207ENST00000508171 BICD2Q8TD16 824 aa12.88□□□□□ -0.35
LIN54-207ENST00000508171 AGXT2Q9BYV1 514 aa12.88□□□□□ -0.35
LIN54-207ENST00000508171 PTPDC1A2A3K4 754 aa12.87□□□□□ -0.35
LIN54-207ENST00000508171 FOXP2O15409 715 aa12.87□□□□□ -0.35
LIN54-207ENST00000508171 HAND2P61296 217 aa12.87□□□□□ -0.35
LIN54-207ENST00000508171 LLPHQ9BRT6 129 aaKnown RBP12.87□□□□□ -0.35
LIN54-207ENST00000508171 TNS2Q63HR2 1409 aa12.87□□□□□ -0.35
LIN54-207ENST00000508171 PDIA3P30101 505 aaKnown RBP12.87□□□□□ -0.35
LIN54-207ENST00000508171 TERF1P54274 439 aa12.87□□□□□ -0.35
LIN54-207ENST00000508171 GUCY1B3Q02153 619 aa12.87□□□□□ -0.35
LIN54-207ENST00000508171 ANO6Q4KMQ2 910 aa12.87□□□□□ -0.35
LIN54-207ENST00000508171 CCDC158Q5M9N0 1113 aa12.87□□□□□ -0.35
LIN54-207ENST00000508171 TTC39AQ5SRH9 613 aa12.87□□□□□ -0.35
LIN54-207ENST00000508171 FAM200AQ8TCP9 573 aa12.87□□□□□ -0.35
LIN54-207ENST00000508171 PIGBQ92521 554 aa12.87□□□□□ -0.35
LIN54-207ENST00000508171 ZSCAN16Q9H4T2 348 aaPredicted RBP12.87□□□□□ -0.35
LIN54-207ENST00000508171 WASHC4Q2M389 1173 aa12.86□□□□□ -0.35
LIN54-207ENST00000508171 KLHL34Q8N239 644 aa12.86□□□□□ -0.35
LIN54-207ENST00000508171 CLSTN2Q9H4D0 955 aa12.86□□□□□ -0.35
LIN54-207ENST00000508171 TOGARAM1Q9Y4F4 1720 aa12.86□□□□□ -0.35
LIN54-207ENST00000508171 UQCRHLA0A096LP55 91 aa12.86□□□□□ -0.35
LIN54-207ENST00000508171 UQCRHP07919 91 aa12.86□□□□□ -0.35
LIN54-207ENST00000508171 GPTP24298 496 aa12.86□□□□□ -0.35
LIN54-207ENST00000508171 ZAP70P43403 619 aa12.86□□□□□ -0.35
LIN54-207ENST00000508171 RBM10P98175 930 aaKnown RBP12.86□□□□□ -0.35
LIN54-207ENST00000508171 NOLC1Q14978 699 aaKnown RBP eCLIP12.86□□□□□ -0.35
LIN54-207ENST00000508171 HLFQ16534 295 aa12.86□□□□□ -0.35
LIN54-207ENST00000508171 PIBF1Q8WXW3 757 aa12.86□□□□□ -0.35
LIN54-207ENST00000508171 PUS7LQ9H0K6 701 aaKnown RBP12.86□□□□□ -0.35
LIN54-207ENST00000508171 DDX19AQ9NUU7 478 aaKnown RBP12.86□□□□□ -0.35
LIN54-207ENST00000508171 CFAP45Q9UL16 551 aa12.86□□□□□ -0.35
LIN54-207ENST00000508171 TAF7LQ5H9L4 462 aa12.85□□□□□ -0.35
LIN54-207ENST00000508171 RBM43Q6ZSC3 357 aaKnown RBP12.85□□□□□ -0.35
LIN54-207ENST00000508171 CBX8Q9HC52 389 aa12.85□□□□□ -0.35
LIN54-207ENST00000508171 MYH15Q9Y2K3 1946 aa12.85□□□□□ -0.35
LIN54-207ENST00000508171 NWD2Q9ULI1 1742 aa12.85□□□□□ -0.35
LIN54-207ENST00000508171 RRP9O43818 475 aaKnown RBP12.85□□□□□ -0.35
LIN54-207ENST00000508171 FGAP02671 866 aa12.85□□□□□ -0.35
LIN54-207ENST00000508171 TRIM28Q13263 835 aaKnown RBP12.85□□□□□ -0.35
LIN54-207ENST00000508171 IFIT5Q13325 482 aaKnown RBP12.85□□□□□ -0.35
LIN54-207ENST00000508171 DNTTIP2Q5QJE6 756 aaKnown RBP12.85□□□□□ -0.35
LIN54-207ENST00000508171 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.85□□□□□ -0.35
LIN54-207ENST00000508171 KCNF1Q9H3M0 494 aa12.85□□□□□ -0.35
LIN54-207ENST00000508171 AKAP2Q9Y2D5 859 aa12.85□□□□□ -0.35
LIN54-207ENST00000508171 SALL1Q9NSC2 1324 aa12.85□□□□□ -0.35
LIN54-207ENST00000508171 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.85□□□□□ -0.35
LIN54-207ENST00000508171 PCCAP05165 728 aaPredicted RBP12.85□□□□□ -0.35
LIN54-207ENST00000508171 CSF1RP07333 972 aa12.85□□□□□ -0.35
LIN54-207ENST00000508171 NAA16Q6N069 864 aaPredicted RBP12.85□□□□□ -0.35
LIN54-207ENST00000508171 KIF6Q6ZMV9 814 aa12.85□□□□□ -0.35
LIN54-207ENST00000508171 ZBTB38Q8NAP3 1195 aaPredicted RBP12.85□□□□□ -0.35
LIN54-207ENST00000508171 USP28Q96RU2 1077 aa12.85□□□□□ -0.35
LIN54-207ENST00000508171 FDPSP14324 419 aaKnown RBP12.84□□□□□ -0.35
LIN54-207ENST00000508171 ZNF274Q96GC6 653 aaPredicted RBP12.84□□□□□ -0.35
LIN54-207ENST00000508171 SPEF2Q9C093 1822 aa12.84□□□□□ -0.35
LIN54-207ENST00000508171 HMGN5P82970 282 aaKnown RBP12.84□□□□□ -0.35
LIN54-207ENST00000508171 ILDR1Q86SU0 546 aaPredicted RBP12.84□□□□□ -0.35
LIN54-207ENST00000508171 TICAM2Q86XR7 235 aa12.84□□□□□ -0.35
LIN54-207ENST00000508171 DNAJC25Q9H1X3 360 aa12.84□□□□□ -0.35
LIN54-207ENST00000508171 RCOR1Q9UKL0 485 aa12.84□□□□□ -0.35
LIN54-207ENST00000508171 ZNF335Q9H4Z2 1342 aaPredicted RBP12.83□□□□□ -0.36
LIN54-207ENST00000508171 SASS6Q6UVJ0 657 aa12.83□□□□□ -0.36
LIN54-207ENST00000508171 RAB11FIP4Q86YS3 637 aa12.83□□□□□ -0.36
LIN54-207ENST00000508171 GOLPH3LQ9H4A5 285 aa12.83□□□□□ -0.36
LIN54-207ENST00000508171 GREM2Q9H772 168 aa12.83□□□□□ -0.36
LIN54-207ENST00000508171 MYO5AQ9Y4I1 1855 aaKnown RBP12.83□□□□□ -0.36
LIN54-207ENST00000508171 OTUD7BQ6GQQ9 843 aa12.83□□□□□ -0.36
LIN54-207ENST00000508171 GIGYF2Q6Y7W6 1299 aaKnown RBP12.83□□□□□ -0.36
LIN54-207ENST00000508171 LDHAL6AQ6ZMR3 332 aa12.83□□□□□ -0.36
LIN54-207ENST00000508171 CCAR1Q8IX12 1150 aaKnown RBP12.83□□□□□ -0.36
LIN54-207ENST00000508171 TTLL11Q8NHH1 800 aa12.83□□□□□ -0.36
LIN54-207ENST00000508171 PYCARDQ9ULZ3 195 aa12.83□□□□□ -0.36
LIN54-207ENST00000508171 RIPOR2Q9Y4F9 1068 aa12.83□□□□□ -0.36
LIN54-207ENST00000508171 STARD3NLO95772 234 aa12.82□□□□□ -0.36
LIN54-207ENST00000508171 ITGA6P23229 1130 aa12.82□□□□□ -0.36
LIN54-207ENST00000508171 MCAMP43121 646 aa12.82□□□□□ -0.36
LIN54-207ENST00000508171 ZNF165P49910 485 aa12.82□□□□□ -0.36
LIN54-207ENST00000508171 IMMTQ16891 758 aaKnown RBP12.82□□□□□ -0.36
LIN54-207ENST00000508171 METTL24Q5JXM2 366 aa12.82□□□□□ -0.36
LIN54-207ENST00000508171 SLC4A9Q96Q91 983 aa12.82□□□□□ -0.36
LIN54-207ENST00000508171 PLA2G12BQ9BX93 195 aa12.82□□□□□ -0.36
LIN54-207ENST00000508171 FAM13BQ9NYF5 915 aa12.82□□□□□ -0.36
LIN54-207ENST00000508171 ABCA3Q99758 1704 aa12.82□□□□□ -0.36
LIN54-207ENST00000508171 MAP3K15Q6ZN16 1313 aa12.82□□□□□ -0.36
LIN54-207ENST00000508171 CARMIL3Q8ND23 1372 aa12.82□□□□□ -0.36
LIN54-207ENST00000508171 AKAP11Q9UKA4 1901 aa12.82□□□□□ -0.36
LIN54-207ENST00000508171 A0A087WWV3 80 aa12.82□□□□□ -0.36
LIN54-207ENST00000508171 ATP2B3Q16720 1220 aa12.82□□□□□ -0.36
LIN54-207ENST00000508171 NLRP10Q86W26 655 aa12.82□□□□□ -0.36
LIN54-207ENST00000508171 UBE2Q2Q8WVN8 375 aa12.82□□□□□ -0.36
LIN54-207ENST00000508171 TEX13AQ9BXU3 409 aaPredicted RBP12.82□□□□□ -0.36
LIN54-207ENST00000508171 CTNNA3Q9UI47 895 aa12.82□□□□□ -0.36
LIN54-207ENST00000508171 FBXO3Q9UK99 471 aa12.82□□□□□ -0.36
LIN54-207ENST00000508171 DENND2AQ9ULE3 1009 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms