RNA–Protein interactions for RNA: ENST00000498658.5

FXR1-222, Transcript of FMR1 autosomal homolog 1, human

TSL 2

Gene FXR1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FXR1-222	ENST00000498658	USP17L4	A6NCW7	530 aa		13.16	□□□□□ -0.3
FXR1-222	ENST00000498658	BCAR3	O75815	825 aa		13.16	□□□□□ -0.3
FXR1-222	ENST00000498658	GNAI3	P08754	354 aa		13.16	□□□□□ -0.3
FXR1-222	ENST00000498658	VIL1	P09327	827 aa	Known RBP	13.16	□□□□□ -0.3
FXR1-222	ENST00000498658	TRIM27	P14373	513 aa		13.16	□□□□□ -0.3
FXR1-222	ENST00000498658	C15orf52	Q6ZUT6	534 aa	Known RBP	13.16	□□□□□ -0.3
FXR1-222	ENST00000498658	USP17L1	Q7RTZ2	530 aa		13.16	□□□□□ -0.3
FXR1-222	ENST00000498658	ANKRD44	Q8N8A2	993 aa		13.16	□□□□□ -0.3
FXR1-222	ENST00000498658	AGBL3	Q8NEM8	1001 aa		13.16	□□□□□ -0.3
FXR1-222	ENST00000498658	ZNF594	Q96JF6	807 aa	Predicted RBP	13.16	□□□□□ -0.3
FXR1-222	ENST00000498658	ZNF609	O15014	1411 aa		13.15	□□□□□ -0.3
FXR1-222	ENST00000498658	MMP14	P50281	582 aa		13.15	□□□□□ -0.3
FXR1-222	ENST00000498658	ZC3H15	Q8WU90	426 aa	Known RBP	13.15	□□□□□ -0.3
FXR1-222	ENST00000498658	FBXO3	Q9UK99	471 aa		13.15	□□□□□ -0.3
FXR1-222	ENST00000498658	MYO3B	Q8WXR4	1341 aa		13.14	□□□□□ -0.31
FXR1-222	ENST00000498658	TAF5L	O75529	589 aa		13.14	□□□□□ -0.31
FXR1-222	ENST00000498658	POTEI	P0CG38	1075 aa		13.14	□□□□□ -0.31
FXR1-222	ENST00000498658	POTEJ	P0CG39	1038 aa		13.14	□□□□□ -0.31
FXR1-222	ENST00000498658	UBE4A	Q14139	1066 aa		13.14	□□□□□ -0.31
FXR1-222	ENST00000498658	STRIP1	Q5VSL9	837 aa		13.14	□□□□□ -0.31
FXR1-222	ENST00000498658	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.14	□□□□□ -0.31
FXR1-222	ENST00000498658	ZNF804A	Q7Z570	1209 aa		13.14	□□□□□ -0.31
FXR1-222	ENST00000498658	MICALL2	Q8IY33	904 aa		13.14	□□□□□ -0.31
FXR1-222	ENST00000498658	CNTROB	Q8N137	903 aa		13.14	□□□□□ -0.31
FXR1-222	ENST00000498658	RIPOR2	Q9Y4F9	1068 aa		13.14	□□□□□ -0.31
FXR1-222	ENST00000498658	ADAMTSL1	Q8N6G6	1762 aa		13.14	□□□□□ -0.31
FXR1-222	ENST00000498658	PLIN1	O60240	522 aa		13.13	□□□□□ -0.31
FXR1-222	ENST00000498658	MS4A1	P11836	297 aa		13.13	□□□□□ -0.31
FXR1-222	ENST00000498658	FTSJ3	Q8IY81	847 aa	Known RBP	13.13	□□□□□ -0.31
FXR1-222	ENST00000498658	HELB	Q8NG08	1087 aa	Predicted RBP	13.13	□□□□□ -0.31
FXR1-222	ENST00000498658	KCNQ5	Q9NR82	932 aa		13.13	□□□□□ -0.31
FXR1-222	ENST00000498658	PSME4	Q14997	1843 aa		13.13	□□□□□ -0.31
FXR1-222	ENST00000498658	WTIP	A6NIX2	430 aa	Predicted RBP	13.12	□□□□□ -0.31
FXR1-222	ENST00000498658	ITGBL1	O95965	494 aa	Predicted RBP	13.12	□□□□□ -0.31
FXR1-222	ENST00000498658	METTL24	Q5JXM2	366 aa		13.12	□□□□□ -0.31
FXR1-222	ENST00000498658	OGFOD1	Q8N543	542 aa		13.12	□□□□□ -0.31
FXR1-222	ENST00000498658	MEIS3	Q99687	375 aa		13.12	□□□□□ -0.31
FXR1-222	ENST00000498658	CD209	Q9NNX6	404 aa		13.12	□□□□□ -0.31
FXR1-222	ENST00000498658	CREBZF	Q9NS37	354 aa		13.12	□□□□□ -0.31
FXR1-222	ENST00000498658	PGAP2	Q9UHJ9	254 aa		13.12	□□□□□ -0.31
FXR1-222	ENST00000498658	LRRFIP2	Q9Y608	721 aa	Known RBP	13.12	□□□□□ -0.31
FXR1-222	ENST00000498658	SCN9A	Q15858	1988 aa		13.12	□□□□□ -0.31
FXR1-222	ENST00000498658	PASK	Q96RG2	1323 aa		13.12	□□□□□ -0.31
FXR1-222	ENST00000498658	PDE8B	O95263	885 aa		13.11	□□□□□ -0.31
FXR1-222	ENST00000498658	GNAI2	P04899	355 aa		13.11	□□□□□ -0.31
FXR1-222	ENST00000498658	USP17L8	P0C7I0	530 aa		13.11	□□□□□ -0.31
FXR1-222	ENST00000498658	MAP1S	Q66K74	1059 aa	Predicted RBP	13.11	□□□□□ -0.31
FXR1-222	ENST00000498658	TTLL5	Q6EMB2	1281 aa		13.11	□□□□□ -0.31
FXR1-222	ENST00000498658	TXNRD3	Q86VQ6	643 aa		13.11	□□□□□ -0.31
FXR1-222	ENST00000498658	DZIP1L	Q8IYY4	767 aa	Known RBP	13.11	□□□□□ -0.31
FXR1-222	ENST00000498658	CLUAP1	Q96AJ1	413 aa		13.11	□□□□□ -0.31
FXR1-222	ENST00000498658	PUS3	Q9BZE2	481 aa	Known RBP	13.11	□□□□□ -0.31
FXR1-222	ENST00000498658		A0A1B0GUL6	1792 aa		13.11	□□□□□ -0.31
FXR1-222	ENST00000498658	EYA2	O00167	538 aa		13.1	□□□□□ -0.31
FXR1-222	ENST00000498658	CIAO1	O76071	339 aa		13.1	□□□□□ -0.31
FXR1-222	ENST00000498658	IL1R1	P14778	569 aa		13.1	□□□□□ -0.31
FXR1-222	ENST00000498658	ZNF280A	P59817	542 aa	Predicted RBP	13.1	□□□□□ -0.31
FXR1-222	ENST00000498658	PTPN12	Q05209	780 aa	Known RBP	13.1	□□□□□ -0.31
FXR1-222	ENST00000498658	CAVIN4	Q5BKX8	364 aa		13.1	□□□□□ -0.31
FXR1-222	ENST00000498658	DACT2	Q5SW24	774 aa		13.1	□□□□□ -0.31
FXR1-222	ENST00000498658	CDC37L1	Q7L3B6	337 aa		13.1	□□□□□ -0.31
FXR1-222	ENST00000498658	FBXW7	Q969H0	707 aa		13.1	□□□□□ -0.31
FXR1-222	ENST00000498658	IRS2	Q9Y4H2	1338 aa		13.1	□□□□□ -0.31
FXR1-222	ENST00000498658	TMEM88B	A6NKF7	163 aa		13.09	□□□□□ -0.31
FXR1-222	ENST00000498658	IFIT1	P09914	478 aa	Known RBP	13.09	□□□□□ -0.31
FXR1-222	ENST00000498658	KLRK1	P26718	216 aa		13.09	□□□□□ -0.31
FXR1-222	ENST00000498658	HIBADH	P31937	336 aa	Known RBP	13.09	□□□□□ -0.31
FXR1-222	ENST00000498658	RFX5	P48382	616 aa	Predicted RBP	13.09	□□□□□ -0.31
FXR1-222	ENST00000498658	FKBP1A	P62942	108 aa	Known RBP	13.09	□□□□□ -0.31
FXR1-222	ENST00000498658	MTX1	Q13505	466 aa		13.09	□□□□□ -0.31
FXR1-222	ENST00000498658	PUM3	Q15397	648 aa	Known RBP	13.09	□□□□□ -0.31
FXR1-222	ENST00000498658	KIF4B	Q2VIQ3	1234 aa		13.09	□□□□□ -0.31
FXR1-222	ENST00000498658	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.09	□□□□□ -0.31
FXR1-222	ENST00000498658	LRRC24	Q50LG9	513 aa		13.09	□□□□□ -0.31
FXR1-222	ENST00000498658	SAMD7	Q7Z3H4	446 aa		13.09	□□□□□ -0.31
FXR1-222	ENST00000498658	VPS37D	Q86XT2	251 aa		13.09	□□□□□ -0.31
FXR1-222	ENST00000498658	TMEM57	Q8N5G2	664 aa		13.09	□□□□□ -0.31
FXR1-222	ENST00000498658	TRPM4	Q8TD43	1214 aa		13.09	□□□□□ -0.31
FXR1-222	ENST00000498658	DCPS	Q96C86	337 aa	Known RBP	13.09	□□□□□ -0.31
FXR1-222	ENST00000498658	GML	Q99445	158 aa		13.09	□□□□□ -0.31
FXR1-222	ENST00000498658	HDAC9	Q9UKV0	1011 aa		13.09	□□□□□ -0.31
FXR1-222	ENST00000498658	SNAP23	O00161	211 aa		13.08	□□□□□ -0.32
FXR1-222	ENST00000498658	SRGAP3	O43295	1099 aa		13.08	□□□□□ -0.32
FXR1-222	ENST00000498658	SASH1	O94885	1247 aa		13.08	□□□□□ -0.32
FXR1-222	ENST00000498658	IL15	P40933	162 aa	Predicted RBP	13.08	□□□□□ -0.32
FXR1-222	ENST00000498658	HIRA	P54198	1017 aa	Predicted RBP	13.08	□□□□□ -0.32
FXR1-222	ENST00000498658	GTF2I	P78347	998 aa		13.08	□□□□□ -0.32
FXR1-222	ENST00000498658	DNAJC5G	Q8N7S2	189 aa		13.08	□□□□□ -0.32
FXR1-222	ENST00000498658	VGLL2	Q8N8G2	317 aa		13.08	□□□□□ -0.32
FXR1-222	ENST00000498658	KLRG1	Q96E93	195 aa		13.08	□□□□□ -0.32
FXR1-222	ENST00000498658	MYOZ2	Q9NPC6	264 aa		13.08	□□□□□ -0.32
FXR1-222	ENST00000498658	COPRS	Q9NQ92	184 aa		13.08	□□□□□ -0.32
FXR1-222	ENST00000498658	CEP126	Q9P2H0	1117 aa		13.08	□□□□□ -0.32
FXR1-222	ENST00000498658	SHTN1	A0MZ66	631 aa		13.07	□□□□□ -0.32
FXR1-222	ENST00000498658	MKRN4P	Q13434	485 aa	Predicted RBP	13.07	□□□□□ -0.32
FXR1-222	ENST00000498658	RBM26	Q5T8P6	1007 aa	Known RBP	13.07	□□□□□ -0.32
FXR1-222	ENST00000498658	ITPRIP	Q8IWB1	547 aa		13.07	□□□□□ -0.32
FXR1-222	ENST00000498658	KLHDC4	Q8TBB5	520 aa		13.07	□□□□□ -0.32
FXR1-222	ENST00000498658	LPIN2	Q92539	896 aa		13.07	□□□□□ -0.32
FXR1-222	ENST00000498658	CHMP4B	Q9H444	224 aa	Known RBP	13.07	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms