RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 EPHA1P21709 976 aa6.42□□□□□ -1.38
CPSF3-205ENST00000489629 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.42□□□□□ -1.38
CPSF3-205ENST00000489629 SH2B1Q9NRF2 756 aaPredicted RBP6.42□□□□□ -1.38
CPSF3-205ENST00000489629 FZD6O60353 706 aa6.41□□□□□ -1.38
CPSF3-205ENST00000489629 WISP1O95388 367 aa6.41□□□□□ -1.38
CPSF3-205ENST00000489629 CES1P23141 567 aa6.41□□□□□ -1.38
CPSF3-205ENST00000489629 FKBP4Q02790 459 aaKnown RBP eCLIP6.41□□□□□ -1.38
CPSF3-205ENST00000489629 C8orf34Q49A92 452 aa6.41□□□□□ -1.38
CPSF3-205ENST00000489629 TXNDC11Q6PKC3 985 aa6.41□□□□□ -1.38
CPSF3-205ENST00000489629 PRR23CQ6ZRP0 262 aa6.41□□□□□ -1.38
CPSF3-205ENST00000489629 DZANK1Q9NVP4 752 aa6.41□□□□□ -1.38
CPSF3-205ENST00000489629 KCNK4Q9NYG8 393 aa6.41□□□□□ -1.38
CPSF3-205ENST00000489629 FSCN2O14926 492 aa6.4□□□□□ -1.38
CPSF3-205ENST00000489629 FAM13AO94988 1023 aa6.4□□□□□ -1.38
CPSF3-205ENST00000489629 PTPRAP18433 802 aa6.4□□□□□ -1.38
CPSF3-205ENST00000489629 CD68P34810 354 aaPredicted RBP6.4□□□□□ -1.38
CPSF3-205ENST00000489629 SF3B2Q13435 895 aaKnown RBP6.4□□□□□ -1.38
CPSF3-205ENST00000489629 AGGF1Q8N302 714 aaeCLIP6.4□□□□□ -1.38
CPSF3-205ENST00000489629 KLHL23Q8NBE8 558 aa6.4□□□□□ -1.38
CPSF3-205ENST00000489629 PMEPA1Q969W9 287 aa6.4□□□□□ -1.38
CPSF3-205ENST00000489629 USTQ9Y2C2 406 aa6.4□□□□□ -1.38
CPSF3-205ENST00000489629 TNFRSF21O75509 655 aa6.39□□□□□ -1.39
CPSF3-205ENST00000489629 TRPA1O75762 1119 aa6.39□□□□□ -1.39
CPSF3-205ENST00000489629 HHIPQ96QV1 700 aa6.39□□□□□ -1.39
CPSF3-205ENST00000489629 CARD10Q9BWT7 1032 aa6.39□□□□□ -1.39
CPSF3-205ENST00000489629 MTMR7Q9Y216 660 aa6.39□□□□□ -1.39
CPSF3-205ENST00000489629 H3BRJ5 948 aa6.38□□□□□ -1.39
CPSF3-205ENST00000489629 EREGO14944 169 aa6.38□□□□□ -1.39
CPSF3-205ENST00000489629 ADAM11O75078 769 aa6.38□□□□□ -1.39
CPSF3-205ENST00000489629 CDC25BP30305 580 aa6.38□□□□□ -1.39
CPSF3-205ENST00000489629 ZNF211Q13398 564 aaPredicted RBP6.38□□□□□ -1.39
CPSF3-205ENST00000489629 ECM1Q16610 540 aa6.38□□□□□ -1.39
CPSF3-205ENST00000489629 ARTNQ5T4W7 220 aa6.38□□□□□ -1.39
CPSF3-205ENST00000489629 GJD3Q8N144 294 aa6.38□□□□□ -1.39
CPSF3-205ENST00000489629 TMEM102Q8N9M5 508 aaPredicted RBP6.38□□□□□ -1.39
CPSF3-205ENST00000489629 TTC16Q8NEE8 873 aa6.38□□□□□ -1.39
CPSF3-205ENST00000489629 WNT8BQ93098 351 aa6.38□□□□□ -1.39
CPSF3-205ENST00000489629 UBL7Q96S82 380 aaPredicted RBP6.38□□□□□ -1.39
CPSF3-205ENST00000489629 ANO2Q9NQ90 1003 aa6.38□□□□□ -1.39
CPSF3-205ENST00000489629 CCDC87Q9NVE4 849 aa6.38□□□□□ -1.39
CPSF3-205ENST00000489629 FOXD3Q9UJU5 478 aaPredicted RBP6.38□□□□□ -1.39
CPSF3-205ENST00000489629 SOX13Q9UN79 622 aa6.38□□□□□ -1.39
CPSF3-205ENST00000489629 PDE2AO00408 941 aaPredicted RBP6.37□□□□□ -1.39
CPSF3-205ENST00000489629 ABL1P00519 1130 aa6.37□□□□□ -1.39
CPSF3-205ENST00000489629 USP5P45974 858 aa6.37□□□□□ -1.39
CPSF3-205ENST00000489629 EHHADHQ08426 723 aa6.37□□□□□ -1.39
CPSF3-205ENST00000489629 FAM117BQ6P1L5 589 aa6.37□□□□□ -1.39
CPSF3-205ENST00000489629 KIAA1211Q6ZU35 1233 aa6.37□□□□□ -1.39
CPSF3-205ENST00000489629 FOXD4L4Q8WXT5 416 aaPredicted RBP6.37□□□□□ -1.39
CPSF3-205ENST00000489629 NXPE3Q969Y0 559 aa6.37□□□□□ -1.39
CPSF3-205ENST00000489629 KLHDC7BQ96G42 594 aa6.37□□□□□ -1.39
CPSF3-205ENST00000489629 EGFL7Q9UHF1 273 aa6.37□□□□□ -1.39
CPSF3-205ENST00000489629 DDX3YO15523 660 aaKnown RBP6.36□□□□□ -1.39
CPSF3-205ENST00000489629 PHACTR2O75167 634 aa6.36□□□□□ -1.39
CPSF3-205ENST00000489629 GLB1P16278 677 aa6.36□□□□□ -1.39
CPSF3-205ENST00000489629 PIP4K2BP78356 416 aa6.36□□□□□ -1.39
CPSF3-205ENST00000489629 AAMPQ13685 434 aa6.36□□□□□ -1.39
CPSF3-205ENST00000489629 ACAD11Q709F0 780 aa6.36□□□□□ -1.39
CPSF3-205ENST00000489629 ARMC10Q8N2F6 343 aa6.36□□□□□ -1.39
CPSF3-205ENST00000489629 SNX29Q8TEQ0 813 aa6.36□□□□□ -1.39
CPSF3-205ENST00000489629 OSMRQ99650 979 aa6.36□□□□□ -1.39
CPSF3-205ENST00000489629 ZKSCAN3Q9BRR0 538 aa6.36□□□□□ -1.39
CPSF3-205ENST00000489629 OSGEPQ9NPF4 335 aa6.36□□□□□ -1.39
CPSF3-205ENST00000489629 SEC31BQ9NQW1 1179 aa6.36□□□□□ -1.39
CPSF3-205ENST00000489629 SCO2A0A1W2PP80 73 aa6.35□□□□□ -1.39
CPSF3-205ENST00000489629 ICMTO60725 284 aa6.35□□□□□ -1.39
CPSF3-205ENST00000489629 PEAR1Q5VY43 1037 aaPredicted RBP6.35□□□□□ -1.39
CPSF3-205ENST00000489629 HGSNATQ68CP4 663 aa6.35□□□□□ -1.39
CPSF3-205ENST00000489629 UBASH3BQ8TF42 649 aa6.35□□□□□ -1.39
CPSF3-205ENST00000489629 ZFYVE28Q9HCC9 887 aa6.35□□□□□ -1.39
CPSF3-205ENST00000489629 ZFP64Q9NPA5 681 aa6.35□□□□□ -1.39
CPSF3-205ENST00000489629 EDN3P14138 238 aa6.34□□□□□ -1.39
CPSF3-205ENST00000489629 FSTP19883 344 aa6.34□□□□□ -1.39
CPSF3-205ENST00000489629 CABP4P57796 275 aa6.34□□□□□ -1.39
CPSF3-205ENST00000489629 LRP8Q14114 963 aa6.34□□□□□ -1.39
CPSF3-205ENST00000489629 DUOXA2Q1HG44 320 aa6.34□□□□□ -1.39
CPSF3-205ENST00000489629 VN1R5Q7Z5H4 357 aa6.34□□□□□ -1.39
CPSF3-205ENST00000489629 SLC51AQ86UW1 340 aa6.34□□□□□ -1.39
CPSF3-205ENST00000489629 FAM46AQ96IP4 442 aaKnown RBP6.34□□□□□ -1.39
CPSF3-205ENST00000489629 BHLHE41Q9C0J9 482 aaPredicted RBP6.34□□□□□ -1.39
CPSF3-205ENST00000489629 RNF112Q9ULX5 631 aa6.34□□□□□ -1.39
CPSF3-205ENST00000489629 FAM177BA6PVY3 158 aa6.33□□□□□ -1.4
CPSF3-205ENST00000489629 HYAL3O43820 417 aaPredicted RBP6.33□□□□□ -1.4
CPSF3-205ENST00000489629 SERPINB4P48594 390 aa6.33□□□□□ -1.4
CPSF3-205ENST00000489629 B4GALNT3Q6L9W6 998 aa6.33□□□□□ -1.4
CPSF3-205ENST00000489629 BSNDQ8WZ55 320 aa6.33□□□□□ -1.4
CPSF3-205ENST00000489629 CEP41Q9BYV8 373 aa6.33□□□□□ -1.4
CPSF3-205ENST00000489629 LATS2Q9NRM7 1088 aa6.33□□□□□ -1.4
CPSF3-205ENST00000489629 AMOTL2Q9Y2J4 779 aa6.33□□□□□ -1.4
CPSF3-205ENST00000489629 RAXQ9Y2V3 346 aa6.33□□□□□ -1.4
CPSF3-205ENST00000489629 SOX1O00570 391 aaPredicted RBP6.32□□□□□ -1.4
CPSF3-205ENST00000489629 UVSSAQ2YD98 709 aa6.32□□□□□ -1.4
CPSF3-205ENST00000489629 TXNDC2Q86VQ3 553 aa6.32□□□□□ -1.4
CPSF3-205ENST00000489629 NLRP12P59046 1061 aa6.31□□□□□ -1.4
CPSF3-205ENST00000489629 ARHGAP4P98171 946 aa6.31□□□□□ -1.4
CPSF3-205ENST00000489629 C19orf57Q0VDD7 668 aa6.31□□□□□ -1.4
CPSF3-205ENST00000489629 GALNT12Q8IXK2 581 aa6.31□□□□□ -1.4
CPSF3-205ENST00000489629 SLC7A3Q8WY07 619 aa6.31□□□□□ -1.4
CPSF3-205ENST00000489629 MEGF11A6BM72 1044 aa6.3□□□□□ -1.4
CPSF3-205ENST00000489629 H3BRB1 525 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 134.3 ms